Wall clock time and date at job start Tue Mar 31 2020 20:56:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 110.05975 * 2 1 4 4 C 1.54272 * 110.03387 * 238.58165 * 2 1 3 5 5 C 1.54889 * 104.19664 * 217.10516 * 4 2 1 6 6 C 1.54895 * 102.74844 * 37.94218 * 5 4 2 7 7 C 1.53875 * 110.03218 * 121.41795 * 2 1 3 8 8 H 1.09007 * 110.07087 * 238.59527 * 7 2 1 9 9 C 1.53004 * 110.03082 * 359.97438 * 7 2 1 10 10 N 1.46504 * 109.46946 * 183.62214 * 9 7 2 11 11 C 1.34774 * 119.99581 * 180.02562 * 10 9 7 12 12 O 1.21346 * 120.00366 * 0.02562 * 11 10 9 13 13 C 1.49452 * 119.99615 * 180.02562 * 11 10 9 14 14 O 1.21347 * 120.00334 * 6.63875 * 13 11 10 15 15 N 1.34779 * 119.99875 * 186.63967 * 13 11 10 16 16 C 1.47082 * 120.87864 * 357.91544 * 15 13 11 17 17 C 1.53706 * 108.27097 * 128.75920 * 16 15 13 18 18 N 1.46898 * 109.25393 * 54.08508 * 17 16 15 19 19 C 1.46906 * 110.99824 * 172.60620 * 18 17 16 20 20 C 1.50699 * 109.46843 * 294.30206 * 19 18 17 21 21 H 1.07992 * 120.00566 * 359.97438 * 20 19 18 22 22 C 1.37886 * 119.99832 * 179.97438 * 20 19 18 23 23 N 1.31516 * 119.99831 * 0.02562 * 22 20 19 24 24 Si 1.86791 * 120.00019 * 179.97438 * 22 20 19 25 25 H 1.48506 * 109.47164 * 90.00054 * 24 22 20 26 26 H 1.48498 * 109.47329 * 210.00180 * 24 22 20 27 27 H 1.48499 * 109.47507 * 330.00239 * 24 22 20 28 28 C 1.46900 * 111.27149 * 296.75249 * 18 17 16 29 29 C 1.47075 * 120.88384 * 178.20647 * 15 13 11 30 30 H 1.08995 * 109.47315 * 298.58794 * 1 2 3 31 31 H 1.09006 * 109.47155 * 58.58616 * 1 2 3 32 32 H 1.09004 * 109.47458 * 178.58025 * 1 2 3 33 33 H 1.09005 * 110.48411 * 98.43312 * 4 2 1 34 34 H 1.08998 * 110.59730 * 335.84019 * 4 2 1 35 35 H 1.09005 * 110.76186 * 279.62950 * 5 4 2 36 36 H 1.08998 * 110.91808 * 156.33081 * 5 4 2 37 37 H 1.08999 * 110.48636 * 203.37838 * 6 5 4 38 38 H 1.08999 * 110.60039 * 80.78999 * 6 5 4 39 39 H 1.08994 * 109.46906 * 63.62587 * 9 7 2 40 40 H 1.09000 * 109.46975 * 303.62210 * 9 7 2 41 41 H 0.96994 * 120.00163 * 0.02562 * 10 9 7 42 42 H 1.08999 * 109.63424 * 248.52365 * 16 15 13 43 43 H 1.09003 * 109.63145 * 9.10820 * 16 15 13 44 44 H 1.09001 * 109.65051 * 294.08226 * 17 16 15 45 45 H 1.09005 * 109.44175 * 173.96346 * 17 16 15 46 46 H 1.09007 * 109.46931 * 54.29889 * 19 18 17 47 47 H 1.08996 * 109.46816 * 174.30022 * 19 18 17 48 48 H 0.97000 * 119.99756 * 180.02562 * 23 22 20 49 49 H 1.09004 * 109.49313 * 303.15002 * 28 18 17 50 50 H 1.08990 * 109.49311 * 183.06867 * 28 18 17 51 51 H 1.08999 * 109.62583 * 350.88672 * 29 15 13 52 52 H 1.08989 * 109.63476 * 111.27468 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9038 1.0238 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 3.3136 -1.5008 -0.7191 6 6 2.8874 -1.9407 0.7036 7 6 2.0570 -0.7536 1.2337 8 1 2.6864 -0.0958 1.8332 9 6 0.8860 -1.2664 2.0744 10 7 1.3996 -1.9057 3.2885 11 6 0.5437 -2.4350 4.1849 12 8 -0.6523 -2.3825 3.9863 13 6 1.0675 -3.0867 5.4236 14 8 2.2519 -3.0341 5.6825 15 7 0.2245 -3.7329 6.2532 16 6 -1.2207 -3.7698 5.9822 17 6 -1.6856 -5.2335 6.0456 18 7 -1.2804 -5.8152 7.3322 19 6 -1.8548 -7.1558 7.5081 20 6 -3.3546 -7.0501 7.6105 21 1 -3.8332 -6.0838 7.5513 22 6 -4.1159 -8.1872 7.7798 23 7 -3.5331 -9.3639 7.8524 24 14 -5.9749 -8.0561 7.9073 25 1 -6.5725 -8.1580 6.5516 26 1 -6.4914 -9.1568 8.7599 27 1 -6.3388 -6.7494 8.5117 28 6 0.1822 -5.8476 7.4654 29 6 0.7243 -4.4143 7.4569 30 1 -0.3634 0.4917 0.9023 31 1 -0.3634 0.5357 -0.8771 32 1 -0.3634 -1.0274 -0.0255 33 1 2.3298 -0.0536 -2.0255 34 1 1.3152 -1.4659 -1.5988 35 1 4.1710 -0.8291 -0.6751 36 1 3.5357 -2.3678 -1.3412 37 1 3.7637 -2.1037 1.3310 38 1 2.2777 -2.8431 0.6594 39 1 0.3138 -1.9917 1.4961 40 1 0.2421 -0.4307 2.3484 41 1 2.3555 -1.9480 3.4471 42 1 -1.7492 -3.1818 6.7325 43 1 -1.4177 -3.3644 4.9898 44 1 -1.2307 -5.7982 5.2318 45 1 -2.7710 -5.2738 5.9539 46 1 -1.5920 -7.7787 6.6531 47 1 -1.4591 -7.6038 8.4195 48 1 -4.0687 -10.1639 7.9711 49 1 0.6111 -6.4037 6.6318 50 1 0.4513 -6.3327 8.4036 51 1 1.8140 -4.4352 7.4399 52 1 0.3822 -3.8851 8.3461 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602247072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:56:56 Heat of formation + Delta-G solvation = -57.520002 kcal Electronic energy + Delta-G solvation = -29874.851553 eV Core-core repulsion = 25874.425181 eV Total energy + Delta-G solvation = -4000.426372 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.96946 -39.64561 -38.51061 -37.57550 -35.24111 -34.14458 -32.38581 -31.89959 -30.74954 -30.23173 -28.39202 -26.42621 -25.55775 -25.11165 -23.57685 -23.10832 -21.69384 -21.18286 -20.70460 -19.76285 -18.88028 -17.43581 -17.23871 -16.64902 -16.33889 -16.04353 -15.70656 -15.34486 -14.87395 -14.71773 -14.69154 -14.38025 -14.16075 -14.09118 -13.83045 -13.73240 -13.47396 -13.00490 -12.86343 -12.72593 -12.51126 -12.33668 -11.93435 -11.54063 -11.45544 -11.29425 -11.25083 -11.18220 -11.09362 -11.02590 -11.00760 -10.79398 -10.78579 -10.71765 -10.56085 -10.51356 -9.89865 -9.44668 -9.26572 -8.97023 -8.57515 -8.44091 -7.29994 -6.04311 -4.05928 1.40019 2.29670 3.19319 3.31580 3.37844 3.42175 3.48467 4.05967 4.10611 4.18569 4.32271 4.41326 4.73285 4.87739 4.88700 4.89173 4.99967 5.03337 5.11784 5.15730 5.31032 5.32968 5.36600 5.40327 5.45213 5.46158 5.53949 5.57667 5.60553 5.68401 5.69364 5.74045 5.83964 5.86645 5.87462 5.94892 5.98722 6.01153 6.24789 6.33012 6.49928 6.57245 6.64963 6.93811 7.24131 7.30107 7.38633 7.71639 7.77058 7.98309 8.04071 8.14680 8.50208 9.01464 9.58451 11.06547 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.002235 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.179511 B =12527.428198 C =13396.861818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.086 4.086 3 H 0.075 0.925 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.124 4.124 7 C -0.103 4.103 8 H 0.081 0.919 9 C 0.120 3.880 10 N -0.701 5.701 11 C 0.511 3.489 12 O -0.506 6.506 13 C 0.502 3.498 14 O -0.539 6.539 15 N -0.568 5.568 16 C 0.055 3.945 17 C 0.053 3.947 18 N -0.537 5.537 19 C 0.193 3.807 20 C -0.508 4.508 21 H 0.064 0.936 22 C 0.055 3.945 23 N -0.898 5.898 24 Si 0.899 3.101 25 H -0.281 1.281 26 H -0.287 1.287 27 H -0.272 1.272 28 C 0.042 3.958 29 C 0.113 3.887 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.071 0.929 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.411 0.589 42 H 0.073 0.927 43 H 0.149 0.851 44 H 0.022 0.978 45 H 0.097 0.903 46 H -0.009 1.009 47 H 0.031 0.969 48 H 0.261 0.739 49 H 0.026 0.974 50 H 0.083 0.917 51 H 0.089 0.911 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.505 18.949 -16.066 28.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.105 4.105 3 H 0.094 0.906 4 C -0.159 4.159 5 C -0.163 4.163 6 C -0.162 4.162 7 C -0.121 4.121 8 H 0.099 0.901 9 C -0.003 4.003 10 N -0.354 5.354 11 C 0.293 3.707 12 O -0.382 6.382 13 C 0.284 3.716 14 O -0.417 6.417 15 N -0.300 5.300 16 C -0.066 4.066 17 C -0.076 4.076 18 N -0.263 5.263 19 C 0.068 3.932 20 C -0.547 4.547 21 H 0.082 0.918 22 C -0.146 4.146 23 N -0.538 5.538 24 Si 0.726 3.274 25 H -0.207 1.207 26 H -0.213 1.213 27 H -0.197 1.197 28 C -0.087 4.087 29 C -0.009 4.009 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.085 0.915 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.096 0.904 41 H 0.247 0.753 42 H 0.092 0.908 43 H 0.166 0.834 44 H 0.041 0.959 45 H 0.116 0.884 46 H 0.009 0.991 47 H 0.049 0.951 48 H 0.071 0.929 49 H 0.045 0.955 50 H 0.102 0.898 51 H 0.108 0.892 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 13.025 19.109 -15.662 27.931 hybrid contribution -0.286 -0.767 -0.304 0.873 sum 12.739 18.343 -15.966 27.453 Atomic orbital electron populations 1.22042 0.94732 1.02472 1.02040 1.21695 0.96020 0.99209 0.93610 0.90649 1.22471 0.97426 0.99013 0.96973 1.22474 0.97696 0.99986 0.96100 1.22506 0.99574 0.97659 0.96465 1.22081 0.96125 0.97523 0.96411 0.90098 1.21872 0.96356 0.97733 0.84305 1.45854 1.10971 1.57449 1.21134 1.20311 0.86503 0.79398 0.84509 1.90383 1.14861 1.56546 1.76445 1.19913 0.86288 0.80828 0.84569 1.90717 1.15593 1.60517 1.74889 1.48192 1.09232 1.49253 1.23368 1.23594 0.77259 0.98667 1.07045 1.22430 1.02264 0.92543 0.90404 1.62130 1.05940 1.27043 1.31154 1.19730 0.95083 0.82302 0.96056 1.21146 0.90932 0.93235 1.49358 0.91759 1.25001 0.98954 0.95262 0.95432 1.69962 1.35614 0.97899 1.50311 0.86487 0.85171 0.77765 0.77943 1.20719 1.21285 1.19724 1.22385 0.90800 0.94330 1.01231 1.21940 0.99614 0.93096 0.86238 0.92033 0.92573 0.91933 0.91671 0.91285 0.91495 0.91459 0.91378 0.91076 0.90448 0.90439 0.75256 0.90829 0.83439 0.95945 0.88446 0.99144 0.95058 0.92909 0.95535 0.89839 0.89248 0.90286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 7.89 37.15 0.29 -0.61 16 2 C -0.09 -0.47 3.50 -89.50 -0.31 -0.78 16 3 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 4 C -0.12 -0.64 6.36 -25.07 -0.16 -0.80 16 5 C -0.13 -0.68 6.91 -24.74 -0.17 -0.85 16 6 C -0.12 -0.77 6.02 -25.07 -0.15 -0.92 16 7 C -0.10 -0.62 2.98 -89.50 -0.27 -0.89 16 8 H 0.08 0.46 8.14 -51.92 -0.42 0.04 16 9 C 0.12 0.96 3.77 -4.04 -0.02 0.95 16 10 N -0.70 -6.98 5.38 -60.73 -0.33 -7.30 16 11 C 0.51 6.80 7.81 -11.59 -0.09 6.71 16 12 O -0.51 -7.54 13.03 5.50 0.07 -7.47 16 13 C 0.50 7.63 7.77 -11.58 -0.09 7.54 16 14 O -0.54 -8.73 15.95 5.50 0.09 -8.65 16 15 N -0.57 -9.14 3.00 -172.69 -0.52 -9.66 16 16 C 0.06 0.92 6.40 -3.36 -0.02 0.89 16 17 C 0.05 1.04 5.47 -3.46 -0.02 1.02 16 18 N -0.54 -11.55 4.62 -235.45 -1.09 -12.63 16 19 C 0.19 5.01 4.72 -4.97 -0.02 4.99 16 20 C -0.51 -14.13 8.41 -34.44 -0.29 -14.42 16 21 H 0.06 1.76 7.13 -52.49 -0.37 1.39 16 22 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 23 N -0.90 -26.63 13.29 55.43 0.74 -25.89 16 24 Si 0.90 21.56 29.54 -169.99 -5.02 16.53 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 27 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.04 0.76 5.62 -3.70 -0.02 0.74 16 29 C 0.11 1.78 6.59 -3.60 -0.02 1.76 16 30 H 0.06 0.37 6.65 -51.93 -0.35 0.02 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.40 6.82 -51.93 -0.35 0.04 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.39 7.84 -51.93 -0.41 -0.02 16 35 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.07 0.51 7.78 -51.93 -0.40 0.10 16 39 H 0.08 0.68 6.86 -51.93 -0.36 0.32 16 40 H 0.08 0.64 6.51 -51.93 -0.34 0.30 16 41 H 0.41 3.67 7.80 -40.82 -0.32 3.35 16 42 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 43 H 0.15 2.40 3.90 -56.59 -0.22 2.18 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.10 2.04 6.67 -51.93 -0.35 1.69 16 46 H -0.01 -0.26 8.13 -51.92 -0.42 -0.68 16 47 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 48 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 50 H 0.08 1.45 7.99 -51.93 -0.41 1.03 16 51 H 0.09 1.32 7.07 -51.93 -0.37 0.96 16 52 H 0.08 1.19 8.14 -51.94 -0.42 0.77 16 LS Contribution 398.77 15.07 6.01 6.01 Total: -1.00 -31.24 398.77 -10.37 -41.61 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -8.87 Total: 0.67 kcal Atomic # 6 Polarization: 8.23 SS G_CDS: -1.46 Total: 6.77 kcal Atomic # 7 Polarization: -54.28 SS G_CDS: -1.20 Total: -55.48 kcal Atomic # 8 Polarization: -16.28 SS G_CDS: 0.16 Total: -16.12 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -31.24 -10.37 -41.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602247072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.910 kcal (2) G-P(sol) polarization free energy of solvation -31.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds