Wall clock time and date at job start Tue Mar 31 2020 20:32:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 110.32635 * 2 1 4 4 C 1.54750 * 110.45250 * 122.28210 * 2 1 3 5 5 C 1.53471 * 103.63031 * 142.68523 * 4 2 1 6 6 C 1.52654 * 115.82547 * 230.39103 * 5 4 2 7 7 C 1.53986 * 86.72734 * 217.17902 * 6 5 4 8 8 N 1.46496 * 113.57927 * 139.19096 * 7 6 5 9 9 C 1.34779 * 120.00257 * 155.00386 * 8 7 6 10 10 O 1.21583 * 120.00132 * 359.97438 * 9 8 7 11 11 N 1.34779 * 120.00098 * 180.02562 * 9 8 7 12 12 C 1.46498 * 119.99850 * 179.97438 * 11 9 8 13 13 C 1.53039 * 109.45489 * 84.96004 * 12 11 9 14 14 C 1.53186 * 109.31773 * 181.37660 * 13 12 11 15 15 N 1.46929 * 108.77443 * 305.36850 * 14 13 12 16 16 C 1.36943 * 120.62913 * 233.58420 * 15 14 13 17 17 H 1.08000 * 119.99404 * 27.69419 * 16 15 14 18 18 C 1.38804 * 119.99837 * 207.69755 * 16 15 14 19 19 N 1.31618 * 120.00488 * 17.35070 * 18 16 15 20 20 Si 1.86806 * 119.99788 * 197.35548 * 18 16 15 21 21 H 1.48500 * 109.46986 * 59.99796 * 20 18 16 22 22 H 1.48495 * 109.47095 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.46875 * 300.00013 * 20 18 16 24 24 C 1.46924 * 118.74006 * 53.60403 * 15 14 13 25 25 C 1.53048 * 109.45605 * 205.02377 * 12 11 9 26 26 C 1.52648 * 115.84367 * 129.03209 * 5 4 2 27 27 C 1.53433 * 105.20780 * 359.69395 * 5 4 2 28 28 O 1.44521 * 110.36004 * 237.78344 * 2 1 3 29 29 H 1.08999 * 109.47230 * 180.76595 * 1 2 3 30 30 H 1.09002 * 109.46932 * 300.76761 * 1 2 3 31 31 H 1.09004 * 109.47276 * 60.76007 * 1 2 3 32 32 H 1.09001 * 110.59261 * 24.15544 * 4 2 1 33 33 H 1.09004 * 110.59592 * 261.22417 * 4 2 1 34 34 H 1.08998 * 113.66881 * 102.72334 * 6 5 4 35 35 H 1.08996 * 113.75757 * 331.64656 * 6 5 4 36 36 H 1.09005 * 113.58292 * 269.90186 * 7 6 5 37 37 H 0.96999 * 120.00122 * 335.00021 * 8 7 6 38 38 H 0.96997 * 119.99857 * 359.97438 * 11 9 8 39 39 H 1.09003 * 109.46150 * 324.98941 * 12 11 9 40 40 H 1.09000 * 109.49353 * 301.33545 * 13 12 11 41 41 H 1.09004 * 109.49394 * 61.42488 * 13 12 11 42 42 H 1.08996 * 109.58795 * 185.57701 * 14 13 12 43 43 H 1.09000 * 109.70110 * 65.21858 * 14 13 12 44 44 H 0.97003 * 120.00197 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.58430 * 186.60482 * 24 15 14 46 46 H 1.08999 * 109.58822 * 66.18143 * 24 15 14 47 47 H 1.08996 * 109.49618 * 298.57455 * 25 12 11 48 48 H 1.08999 * 109.49769 * 58.67377 * 25 12 11 49 49 H 1.08994 * 113.67544 * 28.34199 * 26 5 4 50 50 H 1.09003 * 113.66964 * 257.26286 * 26 5 4 51 51 H 1.08998 * 110.42852 * 95.55666 * 27 5 4 52 52 H 1.09007 * 110.42329 * 217.91503 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9086 1.0221 0.0000 4 6 2.0707 -0.7744 1.2258 5 6 3.3085 -1.4984 0.6790 6 6 3.3872 -2.9945 0.9717 7 6 4.9034 -2.7907 1.1471 8 7 5.4698 -3.5423 2.2698 9 6 6.7743 -3.8808 2.2645 10 8 7.4811 -3.5628 1.3277 11 7 7.2952 -4.5728 3.2972 12 6 8.7131 -4.9412 3.2911 13 6 9.5440 -3.7791 3.8400 14 6 11.0286 -4.1545 3.8002 15 7 11.2153 -5.4222 4.5191 16 6 12.1323 -5.5219 5.5313 17 1 12.3957 -4.6482 6.1091 18 6 12.7231 -6.7455 5.8145 19 7 12.6793 -7.7182 4.9289 20 14 13.5803 -7.0119 7.4528 21 1 12.6072 -6.8189 8.5577 22 1 14.1252 -8.3921 7.5077 23 1 14.6905 -6.0359 7.5949 24 6 10.3997 -6.5811 4.1312 25 6 8.9221 -6.1785 4.1673 26 6 4.5932 -1.3205 1.4840 27 6 3.3858 -1.1014 -0.8011 28 8 2.0328 -0.7223 -1.1463 29 1 -0.3633 -1.0276 0.0137 30 1 -0.3633 0.5257 0.8830 31 1 -0.3634 0.5020 -0.8967 32 1 1.3323 -1.4930 1.5815 33 1 2.3505 -0.0847 2.0222 34 1 3.1257 -3.6215 0.1193 35 1 2.8766 -3.2901 1.8881 36 1 5.4701 -2.9177 0.2246 37 1 4.9059 -3.7964 3.0170 38 1 6.7313 -4.8268 4.0444 39 1 9.0267 -5.1617 2.2707 40 1 9.3765 -2.8919 3.2293 41 1 9.2480 -3.5743 4.8689 42 1 11.6164 -3.3722 4.2803 43 1 11.3507 -4.2705 2.7653 44 1 13.0926 -8.5733 5.1268 45 1 10.5725 -7.3998 4.8297 46 1 10.6681 -6.8957 3.1227 47 1 8.6320 -5.9511 5.1930 48 1 8.3120 -6.9990 3.7895 49 1 4.4232 -1.1413 2.5456 50 1 5.2933 -0.6127 1.0402 51 1 4.0628 -0.2576 -0.9338 52 1 3.7116 -1.9481 -1.4055 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892879116.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:46 Heat of formation + Delta-G solvation = -40.339349 kcal Electronic energy + Delta-G solvation = -29489.847452 eV Core-core repulsion = 25490.166088 eV Total energy + Delta-G solvation = -3999.681363 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.65 seconds Orbital eigenvalues (eV) -41.20420 -39.76840 -37.90239 -37.07677 -34.33231 -33.59653 -32.50985 -31.93541 -30.11644 -29.48353 -28.64803 -26.36253 -26.25699 -25.01402 -23.04571 -22.21939 -21.92182 -21.27192 -20.57837 -19.48862 -19.19227 -18.00900 -16.86139 -16.62873 -16.49866 -15.85170 -15.74318 -15.21663 -14.88077 -14.77729 -14.53201 -14.17513 -13.70956 -13.63562 -13.51952 -13.46334 -12.99522 -12.88073 -12.77758 -12.61276 -12.45849 -12.34079 -12.29566 -11.76237 -11.54301 -11.43471 -11.19037 -11.09847 -10.83486 -10.70806 -10.68213 -10.63141 -10.48056 -10.26361 -10.08003 -10.02299 -9.98985 -9.73027 -9.52233 -9.12850 -8.58700 -8.42111 -6.67691 -5.78578 -3.20140 2.81067 3.33989 3.38704 3.44419 3.45521 3.45917 3.92890 4.00031 4.20558 4.38482 4.46975 4.50288 4.54077 4.58114 4.75166 4.93668 5.06254 5.15009 5.19462 5.31203 5.33950 5.35171 5.36342 5.42696 5.46583 5.50313 5.52871 5.57698 5.63385 5.67247 5.71843 5.75749 5.90372 5.92964 6.10548 6.30911 6.38197 6.44834 6.48408 6.52973 6.60264 6.63185 6.82336 6.92932 7.01065 7.13808 7.33691 7.63145 7.79817 8.16500 8.45467 8.77401 9.21757 9.85242 10.42264 11.30323 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.041714 B = 0.001742 C = 0.001741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 671.073089 B =16065.807863 C =16082.123667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.068 3.932 3 H 0.068 0.932 4 C -0.134 4.134 5 C -0.115 4.115 6 C -0.130 4.130 7 C 0.146 3.854 8 N -0.741 5.741 9 C 0.701 3.299 10 O -0.591 6.591 11 N -0.739 5.739 12 C 0.169 3.831 13 C -0.139 4.139 14 C 0.147 3.853 15 N -0.593 5.593 16 C -0.252 4.252 17 H 0.065 0.935 18 C 0.002 3.998 19 N -0.903 5.903 20 Si 0.903 3.097 21 H -0.284 1.284 22 H -0.291 1.291 23 H -0.283 1.283 24 C 0.174 3.826 25 C -0.146 4.146 26 C -0.138 4.138 27 C 0.067 3.933 28 O -0.373 6.373 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.062 0.938 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.088 0.912 36 H 0.115 0.885 37 H 0.394 0.606 38 H 0.390 0.610 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.254 0.746 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.059 0.941 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.076 0.924 51 H 0.066 0.934 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.288 12.368 -6.553 28.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.011 3.989 3 H 0.086 0.914 4 C -0.171 4.171 5 C -0.116 4.116 6 C -0.168 4.168 7 C 0.040 3.960 8 N -0.396 5.396 9 C 0.401 3.599 10 O -0.469 6.469 11 N -0.393 5.393 12 C 0.065 3.935 13 C -0.179 4.179 14 C 0.020 3.980 15 N -0.315 5.315 16 C -0.382 4.382 17 H 0.083 0.917 18 C -0.197 4.197 19 N -0.548 5.548 20 Si 0.732 3.268 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.209 1.209 24 C 0.048 3.952 25 C -0.186 4.186 26 C -0.177 4.177 27 C -0.009 4.009 28 O -0.292 6.292 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.107 0.893 36 H 0.133 0.867 37 H 0.227 0.773 38 H 0.223 0.777 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.110 0.890 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.072 0.928 49 H 0.107 0.893 50 H 0.094 0.906 51 H 0.084 0.916 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -24.607 12.425 -7.615 28.599 hybrid contribution -0.002 -0.348 1.806 1.839 sum -24.610 12.077 -5.809 28.022 Atomic orbital electron populations 1.21804 0.93275 1.02905 1.02423 1.23043 0.95234 0.95426 0.85223 0.91449 1.22852 0.96671 0.99485 0.98136 1.22275 0.96008 0.96918 0.96385 1.23294 0.95784 0.95021 1.02699 1.22373 0.92692 0.90148 0.90828 1.45147 1.09155 1.61286 1.24007 1.16086 0.81765 0.78791 0.83242 1.90912 1.59603 1.60198 1.36178 1.45567 1.12327 1.59472 1.21885 1.20908 0.77129 0.94864 1.00622 1.22383 0.98195 0.97214 1.00118 1.20876 0.92028 0.89699 0.95365 1.44091 1.42090 1.06531 1.38819 1.19155 1.16579 0.95432 1.07020 0.91693 1.25035 0.98500 0.97952 0.98189 1.70020 1.47432 1.04606 1.32718 0.86366 0.79380 0.76954 0.84051 1.21104 1.21649 1.20893 1.20751 0.83996 0.91176 0.99315 1.22543 1.01991 0.95418 0.98654 1.23437 0.95571 0.98240 1.00488 1.23119 0.84663 1.00213 0.92944 1.89187 1.27563 1.74430 1.38012 0.91786 0.91188 0.91889 0.90255 0.90249 0.90293 0.89329 0.86674 0.77269 0.77683 0.90100 0.92738 0.92520 0.92649 0.96151 0.93562 0.89007 0.96088 0.92275 0.92800 0.89349 0.90562 0.91594 0.88650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.81 9.53 37.15 0.35 -0.46 16 2 C 0.07 0.47 3.94 -25.81 -0.10 0.37 16 3 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 4 C -0.13 -0.80 6.15 -25.57 -0.16 -0.96 16 5 C -0.11 -0.79 1.17 -154.42 -0.18 -0.97 16 6 C -0.13 -0.88 6.97 -26.39 -0.18 -1.07 16 7 C 0.15 1.34 4.11 -66.92 -0.28 1.06 16 8 N -0.74 -7.53 5.36 -57.68 -0.31 -7.84 16 9 C 0.70 10.31 8.53 -86.91 -0.74 9.57 16 10 O -0.59 -11.27 15.60 5.29 0.08 -11.19 16 11 N -0.74 -10.36 5.08 -58.63 -0.30 -10.66 16 12 C 0.17 2.97 2.42 -67.89 -0.16 2.80 16 13 C -0.14 -2.58 5.65 -26.62 -0.15 -2.73 16 14 C 0.15 3.21 6.52 -3.71 -0.02 3.18 16 15 N -0.59 -14.85 3.00 -172.32 -0.52 -15.36 16 16 C -0.25 -6.90 9.58 -15.06 -0.14 -7.05 16 17 H 0.07 1.75 7.89 -52.49 -0.41 1.33 16 18 C 0.00 0.05 4.91 -17.43 -0.09 -0.04 16 19 N -0.90 -26.06 11.19 55.49 0.62 -25.44 16 20 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 21 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 22 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.17 4.10 5.31 -3.71 -0.02 4.08 16 25 C -0.15 -2.67 5.55 -26.61 -0.15 -2.82 16 26 C -0.14 -1.08 7.09 -26.40 -0.19 -1.27 16 27 C 0.07 0.52 6.90 37.38 0.26 0.78 16 28 O -0.37 -3.47 11.35 -35.23 -0.40 -3.87 16 29 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 30 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.44 7.70 -51.93 -0.40 0.04 16 33 H 0.08 0.41 7.97 -51.93 -0.41 0.00 16 34 H 0.08 0.55 8.05 -51.93 -0.42 0.14 16 35 H 0.09 0.50 8.11 -51.93 -0.42 0.08 16 36 H 0.12 1.30 7.46 -51.93 -0.39 0.91 16 37 H 0.39 2.87 8.74 -40.82 -0.36 2.52 16 38 H 0.39 4.32 8.62 -40.82 -0.35 3.96 16 39 H 0.08 1.62 7.58 -51.93 -0.39 1.23 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 41 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 42 H 0.05 1.18 7.93 -51.93 -0.41 0.77 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.09 2.39 6.04 -51.93 -0.31 2.08 16 46 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 49 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 50 H 0.08 0.65 8.05 -51.93 -0.42 0.23 16 51 H 0.07 0.48 8.05 -51.93 -0.42 0.07 16 52 H 0.10 0.71 7.92 -51.92 -0.41 0.29 16 LS Contribution 404.77 15.07 6.10 6.10 Total: -1.00 -32.58 404.77 -11.01 -43.60 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: -9.31 Total: 3.67 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -1.95 Total: 4.49 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.50 Total: -59.30 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.32 Total: -15.06 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -32.58 -11.01 -43.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892879116.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -32.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.65 seconds