Wall clock time and date at job start Tue Mar 31 2020 20:32:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.32003 * 2 1 4 4 C 1.54755 * 110.45103 * 237.71853 * 2 1 3 5 5 C 1.53462 * 103.62843 * 217.30994 * 4 2 1 6 6 C 1.52650 * 115.83822 * 230.97531 * 5 4 2 7 7 C 1.53992 * 86.72962 * 266.78354 * 6 5 4 8 8 N 1.46500 * 113.57807 * 220.81558 * 7 6 5 9 9 C 1.34779 * 119.99738 * 205.00162 * 8 7 6 10 10 O 1.21594 * 120.00222 * 354.85493 * 9 8 7 11 11 N 1.34777 * 119.99938 * 174.85576 * 9 8 7 12 12 C 1.47079 * 120.88049 * 184.71333 * 11 9 8 13 13 C 1.53703 * 108.27706 * 128.75330 * 12 11 9 14 14 N 1.46897 * 109.25217 * 54.08198 * 13 12 11 15 15 C 1.46904 * 110.99642 * 172.60902 * 14 13 12 16 16 C 1.50698 * 109.47290 * 59.42377 * 15 14 13 17 17 H 1.08003 * 119.99738 * 355.05757 * 16 15 14 18 18 C 1.37878 * 120.00169 * 175.04383 * 16 15 14 19 19 N 1.31514 * 119.99852 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99968 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46820 * 60.00980 * 20 18 16 22 22 H 1.48499 * 109.46993 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47480 * 300.00982 * 20 18 16 24 24 C 1.46898 * 111.27122 * 296.75415 * 14 13 12 25 25 C 1.47082 * 120.88127 * 4.99030 * 11 9 8 26 26 C 1.52656 * 115.82757 * 129.61908 * 5 4 2 27 27 C 1.53433 * 105.21074 * 0.31738 * 5 4 2 28 28 O 1.44524 * 110.35835 * 122.22294 * 2 1 3 29 29 H 1.09004 * 109.46843 * 299.23439 * 1 2 3 30 30 H 1.09007 * 109.46920 * 59.23142 * 1 2 3 31 31 H 1.09003 * 109.47268 * 179.22974 * 1 2 3 32 32 H 1.08999 * 110.58682 * 98.77215 * 4 2 1 33 33 H 1.09005 * 110.59289 * 335.84777 * 4 2 1 34 34 H 1.09002 * 113.66710 * 152.32856 * 6 5 4 35 35 H 1.08998 * 113.67421 * 21.24748 * 6 5 4 36 36 H 1.08998 * 113.57675 * 90.02691 * 7 6 5 37 37 H 0.96991 * 120.00340 * 25.00253 * 8 7 6 38 38 H 1.08997 * 109.62825 * 248.52093 * 12 11 9 39 39 H 1.09002 * 109.63193 * 9.10555 * 12 11 9 40 40 H 1.08998 * 109.64572 * 294.07577 * 13 12 11 41 41 H 1.08999 * 109.42011 * 173.95059 * 13 12 11 42 42 H 1.08998 * 109.47283 * 179.42835 * 15 14 13 43 43 H 1.09006 * 109.47029 * 299.42716 * 15 14 13 44 44 H 0.97003 * 119.99707 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.49585 * 303.14753 * 24 14 13 46 46 H 1.09004 * 109.49353 * 183.06659 * 24 14 13 47 47 H 1.08999 * 109.62759 * 350.89515 * 25 11 9 48 48 H 1.09002 * 109.62489 * 111.28388 * 25 11 9 49 49 H 1.09000 * 113.66875 * 338.76519 * 26 5 4 50 50 H 1.08991 * 113.75770 * 207.70043 * 26 5 4 51 51 H 1.08995 * 110.42508 * 141.96303 * 27 5 4 52 52 H 1.09001 * 110.42387 * 264.31413 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0708 -0.7744 -1.2259 5 6 3.3086 -1.4983 -0.6791 6 6 4.5932 -1.3201 -1.4842 7 6 4.2081 -2.6174 -2.2192 8 7 5.3431 -3.5102 -2.4659 9 6 5.2989 -4.3901 -3.4859 10 8 4.2827 -4.5088 -4.1429 11 7 6.3813 -5.1385 -3.7775 12 6 6.3901 -6.0291 -4.9480 13 6 7.6567 -5.7354 -5.7676 14 7 8.8340 -5.8447 -4.8958 15 6 10.0761 -5.7445 -5.6736 16 6 10.1137 -4.4202 -6.3919 17 1 9.2625 -3.7569 -6.3464 18 6 11.2346 -4.0553 -7.1070 19 7 12.2709 -4.8632 -7.1626 20 14 11.2808 -2.4141 -7.9980 21 1 11.1073 -1.3132 -7.0167 22 1 12.5872 -2.2618 -8.6875 23 1 10.1846 -2.3628 -8.9983 24 6 8.8001 -4.8384 -3.8261 25 6 7.5826 -5.0907 -2.9304 26 6 3.3876 -2.9944 -0.9719 27 6 3.3858 -1.1015 0.8010 28 8 2.0328 -0.7225 1.1463 29 1 -0.3633 0.5019 0.8968 30 1 -0.3633 0.5258 -0.8831 31 1 -0.3634 -1.0276 -0.0138 32 1 2.3505 -0.0846 -2.0221 33 1 1.3323 -1.4930 -1.5817 34 1 5.5002 -1.4088 -0.8862 35 1 4.5902 -0.4374 -2.1236 36 1 3.5991 -2.4507 -3.1077 37 1 6.1262 -3.4681 -1.8953 38 1 6.3967 -7.0678 -4.6177 39 1 5.5062 -5.8413 -5.5577 40 1 7.6013 -4.7277 -6.1795 41 1 7.7378 -6.4570 -6.5805 42 1 10.9319 -5.8183 -5.0026 43 1 10.1148 -6.5543 -6.4023 44 1 13.0594 -4.6066 -7.6660 45 1 8.7288 -3.8432 -4.2649 46 1 9.7105 -4.9095 -3.2309 47 1 7.4876 -4.2823 -2.2055 48 1 7.6997 -6.0398 -2.4072 49 1 2.4231 -3.4466 -1.2029 50 1 3.9531 -3.5578 -0.2299 51 1 3.7096 -1.9488 1.4055 52 1 4.0646 -0.2591 0.9341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897795184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:31 Heat of formation + Delta-G solvation = -40.622134 kcal Electronic energy + Delta-G solvation = -30017.913715 eV Core-core repulsion = 26018.220089 eV Total energy + Delta-G solvation = -3999.693626 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.18307 -39.96304 -37.98631 -37.14955 -34.45321 -33.54934 -32.42267 -32.26389 -30.59766 -29.00699 -27.86187 -26.51266 -26.22154 -25.34372 -23.34039 -22.76173 -21.90222 -21.69881 -20.56372 -19.52776 -18.91011 -17.80951 -16.91678 -16.38617 -16.10673 -15.95070 -15.75771 -15.38911 -14.95978 -14.71114 -14.58032 -14.40522 -13.93536 -13.86166 -13.74614 -13.40867 -13.33582 -12.96316 -12.85261 -12.61462 -12.31399 -12.25610 -12.08929 -11.88341 -11.74058 -11.47453 -11.18775 -11.10085 -11.03704 -10.99395 -10.76937 -10.68831 -10.66074 -10.61221 -10.28988 -10.00749 -9.99022 -9.85067 -9.66940 -9.07497 -8.49566 -8.30712 -7.28548 -6.09441 -4.18956 2.76954 3.23752 3.29258 3.31189 3.31857 3.47803 3.92015 4.02767 4.13358 4.21467 4.34918 4.49169 4.62790 4.67903 4.80266 4.86662 4.90920 5.12209 5.16102 5.20611 5.23839 5.28371 5.35123 5.38628 5.42663 5.45619 5.48104 5.50943 5.56606 5.65809 5.72041 5.73341 5.78567 5.79844 5.86844 5.94778 6.02877 6.12070 6.38660 6.50595 6.53120 6.57458 6.69153 6.72928 7.11093 7.17378 7.44466 7.81881 7.92178 8.07081 8.15195 8.21582 8.72665 8.90677 9.48392 10.95570 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.002263 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.667493 B =12372.469317 C =13089.957467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.071 3.929 3 H 0.068 0.932 4 C -0.130 4.130 5 C -0.114 4.114 6 C -0.133 4.133 7 C 0.148 3.852 8 N -0.739 5.739 9 C 0.708 3.292 10 O -0.598 6.598 11 N -0.624 5.624 12 C 0.133 3.867 13 C 0.049 3.951 14 N -0.539 5.539 15 C 0.187 3.813 16 C -0.552 4.552 17 H 0.055 0.945 18 C 0.066 3.934 19 N -0.889 5.889 20 Si 0.889 3.111 21 H -0.278 1.278 22 H -0.286 1.286 23 H -0.277 1.277 24 C 0.050 3.950 25 C 0.116 3.884 26 C -0.135 4.135 27 C 0.063 3.937 28 O -0.374 6.374 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.064 0.936 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.079 0.921 36 H 0.113 0.887 37 H 0.396 0.604 38 H 0.066 0.934 39 H 0.087 0.913 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.035 0.965 43 H 0.030 0.970 44 H 0.263 0.737 45 H 0.042 0.958 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.071 0.929 49 H 0.075 0.925 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.803 7.302 15.758 24.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.013 3.987 3 H 0.086 0.914 4 C -0.168 4.168 5 C -0.115 4.115 6 C -0.172 4.172 7 C 0.042 3.958 8 N -0.396 5.396 9 C 0.409 3.591 10 O -0.477 6.477 11 N -0.360 5.360 12 C 0.010 3.990 13 C -0.080 4.080 14 N -0.264 5.264 15 C 0.062 3.938 16 C -0.591 4.591 17 H 0.073 0.927 18 C -0.137 4.137 19 N -0.528 5.528 20 Si 0.717 3.283 21 H -0.203 1.203 22 H -0.211 1.211 23 H -0.202 1.202 24 C -0.079 4.079 25 C -0.008 4.008 26 C -0.174 4.174 27 C -0.014 4.014 28 O -0.293 6.293 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.232 0.768 38 H 0.084 0.916 39 H 0.105 0.895 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.073 0.927 45 H 0.061 0.939 46 H 0.096 0.904 47 H 0.086 0.914 48 H 0.089 0.911 49 H 0.094 0.906 50 H 0.105 0.895 51 H 0.110 0.890 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.463 6.673 15.582 25.064 hybrid contribution 0.909 1.862 -0.854 2.241 sum -17.554 8.535 14.728 24.452 Atomic orbital electron populations 1.21815 0.93231 1.03007 1.02423 1.23048 0.95293 0.95329 0.85033 0.91445 1.22784 0.96351 0.99537 0.98098 1.22244 0.95924 0.97515 0.95806 1.23310 0.97040 0.98436 0.98374 1.22331 0.87646 0.88362 0.97483 1.45274 1.20833 1.39763 1.33705 1.15881 0.83419 0.79065 0.80691 1.90874 1.30898 1.71636 1.54306 1.47377 1.13733 1.45162 1.29758 1.21815 0.98976 0.92433 0.85770 1.22367 0.89501 1.01156 0.94983 1.62481 1.04110 1.46670 1.13107 1.19771 0.85745 0.95842 0.92452 1.21693 1.00932 1.04246 1.32204 0.92676 1.24957 0.95532 0.96961 0.96261 1.69928 1.05059 1.36364 1.41419 0.86707 0.77304 0.84298 0.80013 1.20342 1.21139 1.20242 1.22212 0.96073 0.95524 0.94126 1.21837 0.84984 1.01153 0.92793 1.23432 1.01422 0.94211 0.98316 1.23225 0.84678 0.99821 0.93657 1.89172 1.27590 1.74485 1.38076 0.91914 0.91100 0.91715 0.90013 0.89898 0.89158 0.90241 0.86879 0.76752 0.91594 0.89507 0.93898 0.90343 0.94663 0.95166 0.92691 0.93947 0.90439 0.91447 0.91064 0.90643 0.89484 0.88984 0.91976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 9.53 37.16 0.35 -0.59 16 2 C 0.07 0.53 3.94 -25.80 -0.10 0.43 16 3 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 4 C -0.13 -0.95 5.99 -25.57 -0.15 -1.10 16 5 C -0.11 -0.86 1.17 -154.42 -0.18 -1.04 16 6 C -0.13 -1.01 7.12 -26.39 -0.19 -1.20 16 7 C 0.15 1.51 4.08 -66.92 -0.27 1.24 16 8 N -0.74 -8.73 5.27 -57.68 -0.30 -9.03 16 9 C 0.71 11.22 8.31 -86.92 -0.72 10.50 16 10 O -0.60 -11.47 15.46 5.28 0.08 -11.39 16 11 N -0.62 -9.71 3.00 -177.90 -0.53 -10.24 16 12 C 0.13 2.18 6.61 -3.36 -0.02 2.16 16 13 C 0.05 0.94 5.17 -3.46 -0.02 0.92 16 14 N -0.54 -10.87 4.83 -235.46 -1.14 -12.00 16 15 C 0.19 4.61 5.11 -4.97 -0.03 4.59 16 16 C -0.55 -14.69 7.76 -34.44 -0.27 -14.96 16 17 H 0.06 1.48 5.88 -52.48 -0.31 1.17 16 18 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 19 N -0.89 -25.53 13.29 55.43 0.74 -24.79 16 20 Si 0.89 21.13 29.54 -169.99 -5.02 16.11 16 21 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 22 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 C 0.05 0.88 5.25 -3.70 -0.02 0.86 16 25 C 0.12 1.58 6.59 -3.60 -0.02 1.56 16 26 C -0.13 -1.19 7.13 -26.40 -0.19 -1.38 16 27 C 0.06 0.48 7.06 37.38 0.26 0.75 16 28 O -0.37 -3.63 11.35 -35.23 -0.40 -4.03 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 32 H 0.08 0.53 7.80 -51.93 -0.40 0.12 16 33 H 0.08 0.63 7.53 -51.93 -0.39 0.23 16 34 H 0.09 0.59 8.12 -51.93 -0.42 0.17 16 35 H 0.08 0.59 7.90 -51.93 -0.41 0.18 16 36 H 0.11 1.38 7.53 -51.93 -0.39 0.99 16 37 H 0.40 3.82 6.22 -40.82 -0.25 3.57 16 38 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.09 1.46 7.09 -51.93 -0.37 1.09 16 40 H 0.04 0.92 6.61 -51.93 -0.34 0.57 16 41 H 0.08 1.48 8.11 -51.93 -0.42 1.06 16 42 H 0.04 0.93 8.07 -51.93 -0.42 0.51 16 43 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 45 H 0.04 0.84 7.11 -51.93 -0.37 0.47 16 46 H 0.08 1.33 8.06 -51.93 -0.42 0.91 16 47 H 0.07 0.71 5.63 -51.93 -0.29 0.42 16 48 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.07 0.73 7.89 -51.93 -0.41 0.32 16 50 H 0.09 0.72 7.99 -51.93 -0.42 0.31 16 51 H 0.09 0.64 7.86 -51.93 -0.41 0.23 16 52 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 LS Contribution 399.16 15.07 6.02 6.02 Total: -1.00 -31.75 399.16 -11.19 -42.93 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -8.96 Total: 1.98 kcal Atomic # 6 Polarization: 6.11 SS G_CDS: -1.66 Total: 4.45 kcal Atomic # 7 Polarization: -54.83 SS G_CDS: -1.24 Total: -56.07 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -0.32 Total: -15.42 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.75 -11.19 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897795184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.310 kcal (2) G-P(sol) polarization free energy of solvation -31.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds