Wall clock time and date at job start Tue Mar 31 2020 20:32:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08998 * 110.32003 * 2 1 4 4 C 1.54755 * 110.45103 * 237.71853 * 2 1 3 5 5 C 1.53462 * 103.62843 * 217.30994 * 4 2 1 6 6 C 1.52650 * 115.83822 * 230.97531 * 5 4 2 7 7 C 1.53992 * 86.72962 * 266.78354 * 6 5 4 8 8 N 1.46500 * 113.57807 * 220.81558 * 7 6 5 9 9 C 1.34779 * 119.99738 * 205.00162 * 8 7 6 10 10 O 1.21594 * 120.00222 * 354.85493 * 9 8 7 11 11 N 1.34777 * 119.99938 * 174.85576 * 9 8 7 12 12 C 1.47079 * 120.88049 * 184.71333 * 11 9 8 13 13 C 1.53703 * 108.27706 * 128.75330 * 12 11 9 14 14 N 1.46897 * 109.25217 * 54.08198 * 13 12 11 15 15 C 1.46904 * 110.99642 * 172.60902 * 14 13 12 16 16 C 1.50698 * 109.47290 * 59.42377 * 15 14 13 17 17 H 1.08003 * 119.99738 * 355.05757 * 16 15 14 18 18 C 1.37878 * 120.00169 * 175.04383 * 16 15 14 19 19 N 1.31514 * 119.99852 * 0.02562 * 18 16 15 20 20 Si 1.86804 * 119.99968 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.46820 * 60.00980 * 20 18 16 22 22 H 1.48499 * 109.46993 * 180.02562 * 20 18 16 23 23 H 1.48492 * 109.47480 * 300.00982 * 20 18 16 24 24 C 1.46898 * 111.27122 * 296.75415 * 14 13 12 25 25 C 1.47082 * 120.88127 * 4.99030 * 11 9 8 26 26 C 1.52656 * 115.82757 * 129.61908 * 5 4 2 27 27 C 1.53433 * 105.21074 * 0.31738 * 5 4 2 28 28 O 1.44524 * 110.35835 * 122.22294 * 2 1 3 29 29 H 1.09004 * 109.46843 * 299.23439 * 1 2 3 30 30 H 1.09007 * 109.46920 * 59.23142 * 1 2 3 31 31 H 1.09003 * 109.47268 * 179.22974 * 1 2 3 32 32 H 1.08999 * 110.58682 * 98.77215 * 4 2 1 33 33 H 1.09005 * 110.59289 * 335.84777 * 4 2 1 34 34 H 1.09002 * 113.66710 * 152.32856 * 6 5 4 35 35 H 1.08998 * 113.67421 * 21.24748 * 6 5 4 36 36 H 1.08998 * 113.57675 * 90.02691 * 7 6 5 37 37 H 0.96991 * 120.00340 * 25.00253 * 8 7 6 38 38 H 1.08997 * 109.62825 * 248.52093 * 12 11 9 39 39 H 1.09002 * 109.63193 * 9.10555 * 12 11 9 40 40 H 1.08998 * 109.64572 * 294.07577 * 13 12 11 41 41 H 1.08999 * 109.42011 * 173.95059 * 13 12 11 42 42 H 1.08998 * 109.47283 * 179.42835 * 15 14 13 43 43 H 1.09006 * 109.47029 * 299.42716 * 15 14 13 44 44 H 0.97003 * 119.99707 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.49585 * 303.14753 * 24 14 13 46 46 H 1.09004 * 109.49353 * 183.06659 * 24 14 13 47 47 H 1.08999 * 109.62759 * 350.89515 * 25 11 9 48 48 H 1.09002 * 109.62489 * 111.28388 * 25 11 9 49 49 H 1.09000 * 113.66875 * 338.76519 * 26 5 4 50 50 H 1.08991 * 113.75770 * 207.70043 * 26 5 4 51 51 H 1.08995 * 110.42508 * 141.96303 * 27 5 4 52 52 H 1.09001 * 110.42387 * 264.31413 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9086 1.0222 0.0000 4 6 2.0708 -0.7744 -1.2259 5 6 3.3086 -1.4983 -0.6791 6 6 4.5932 -1.3201 -1.4842 7 6 4.2081 -2.6174 -2.2192 8 7 5.3431 -3.5102 -2.4659 9 6 5.2989 -4.3901 -3.4859 10 8 4.2827 -4.5088 -4.1429 11 7 6.3813 -5.1385 -3.7775 12 6 6.3901 -6.0291 -4.9480 13 6 7.6567 -5.7354 -5.7676 14 7 8.8340 -5.8447 -4.8958 15 6 10.0761 -5.7445 -5.6736 16 6 10.1137 -4.4202 -6.3919 17 1 9.2625 -3.7569 -6.3464 18 6 11.2346 -4.0553 -7.1070 19 7 12.2709 -4.8632 -7.1626 20 14 11.2808 -2.4141 -7.9980 21 1 11.1073 -1.3132 -7.0167 22 1 12.5872 -2.2618 -8.6875 23 1 10.1846 -2.3628 -8.9983 24 6 8.8001 -4.8384 -3.8261 25 6 7.5826 -5.0907 -2.9304 26 6 3.3876 -2.9944 -0.9719 27 6 3.3858 -1.1015 0.8010 28 8 2.0328 -0.7225 1.1463 29 1 -0.3633 0.5019 0.8968 30 1 -0.3633 0.5258 -0.8831 31 1 -0.3634 -1.0276 -0.0138 32 1 2.3505 -0.0846 -2.0221 33 1 1.3323 -1.4930 -1.5817 34 1 5.5002 -1.4088 -0.8862 35 1 4.5902 -0.4374 -2.1236 36 1 3.5991 -2.4507 -3.1077 37 1 6.1262 -3.4681 -1.8953 38 1 6.3967 -7.0678 -4.6177 39 1 5.5062 -5.8413 -5.5577 40 1 7.6013 -4.7277 -6.1795 41 1 7.7378 -6.4570 -6.5805 42 1 10.9319 -5.8183 -5.0026 43 1 10.1148 -6.5543 -6.4023 44 1 13.0594 -4.6066 -7.6660 45 1 8.7288 -3.8432 -4.2649 46 1 9.7105 -4.9095 -3.2309 47 1 7.4876 -4.2823 -2.2055 48 1 7.6997 -6.0398 -2.4072 49 1 2.4231 -3.4466 -1.2029 50 1 3.9531 -3.5578 -0.2299 51 1 3.7096 -1.9488 1.4055 52 1 4.0646 -0.2591 0.9341 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897795184.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:32:26 Heat of formation + Delta-G solvation = -62.132432 kcal Electronic energy + Delta-G solvation = -30018.846472 eV Core-core repulsion = 26018.220089 eV Total energy + Delta-G solvation = -4000.626382 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.96228 -41.07527 -39.20872 -38.15735 -36.00876 -34.74800 -34.09912 -32.97159 -31.93335 -30.09736 -29.22179 -27.17174 -27.00113 -26.87116 -24.67319 -24.31598 -23.07531 -22.28081 -21.88097 -20.69893 -19.81155 -19.01670 -18.31999 -17.75989 -17.01879 -16.79895 -16.59642 -16.54333 -16.36043 -16.00756 -15.75265 -15.57868 -15.46990 -15.02998 -14.98457 -14.52533 -14.27594 -13.96745 -13.73168 -13.64190 -13.40127 -13.34148 -12.99135 -12.94727 -12.87106 -12.78056 -12.53466 -12.45866 -12.42199 -12.25403 -12.16546 -11.93986 -11.84361 -11.65350 -11.59154 -11.40746 -11.28447 -11.12137 -10.61929 -10.60486 -10.15387 -9.55890 -9.02712 -8.17478 -6.36551 1.34580 1.35982 1.43839 1.63688 2.10501 2.34876 2.88302 2.92420 3.07478 3.31346 3.38380 3.50964 3.57480 3.82272 3.97522 4.00492 4.10618 4.12229 4.18209 4.22970 4.30091 4.37054 4.50827 4.53820 4.61220 4.62543 4.72023 4.77284 4.78082 4.81392 4.84165 4.88586 4.89597 4.96172 5.05140 5.05991 5.11297 5.13370 5.19342 5.20517 5.26139 5.28308 5.32367 5.47510 5.63207 5.72163 5.92238 5.95195 6.03817 6.21897 6.46490 6.83211 6.96024 7.34781 7.53878 8.84393 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017198 B = 0.002263 C = 0.002139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.667493 B =12372.469317 C =13089.957467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.067 3.933 3 H 0.077 0.923 4 C -0.131 4.131 5 C -0.106 4.106 6 C -0.119 4.119 7 C 0.136 3.864 8 N -0.723 5.723 9 C 0.703 3.297 10 O -0.636 6.636 11 N -0.628 5.628 12 C 0.144 3.856 13 C 0.056 3.944 14 N -0.535 5.535 15 C 0.200 3.800 16 C -0.556 4.556 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.922 5.922 20 Si 0.952 3.048 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.276 1.276 24 C 0.050 3.950 25 C 0.126 3.874 26 C -0.131 4.131 27 C 0.061 3.939 28 O -0.398 6.398 29 H 0.062 0.938 30 H 0.085 0.915 31 H 0.055 0.945 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.090 0.910 37 H 0.409 0.591 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.015 0.985 41 H 0.074 0.926 42 H 0.015 0.985 43 H 0.005 0.995 44 H 0.265 0.735 45 H 0.018 0.982 46 H 0.082 0.918 47 H 0.105 0.895 48 H 0.089 0.911 49 H 0.061 0.939 50 H 0.097 0.903 51 H 0.099 0.901 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.232 8.771 17.400 26.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.010 3.990 3 H 0.095 0.905 4 C -0.169 4.169 5 C -0.107 4.107 6 C -0.157 4.157 7 C 0.030 3.970 8 N -0.380 5.380 9 C 0.405 3.595 10 O -0.518 6.518 11 N -0.365 5.365 12 C 0.021 3.979 13 C -0.074 4.074 14 N -0.259 5.259 15 C 0.073 3.927 16 C -0.595 4.595 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.561 5.561 20 Si 0.777 3.223 21 H -0.195 1.195 22 H -0.206 1.206 23 H -0.201 1.201 24 C -0.080 4.080 25 C 0.003 3.997 26 C -0.169 4.169 27 C -0.015 4.015 28 O -0.318 6.318 29 H 0.081 0.919 30 H 0.104 0.896 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.108 0.892 37 H 0.248 0.752 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.033 0.967 41 H 0.092 0.908 42 H 0.034 0.966 43 H 0.023 0.977 44 H 0.074 0.926 45 H 0.036 0.964 46 H 0.100 0.900 47 H 0.123 0.877 48 H 0.107 0.893 49 H 0.080 0.920 50 H 0.115 0.885 51 H 0.117 0.883 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.894 8.164 17.272 26.869 hybrid contribution 1.009 1.386 -1.349 2.181 sum -17.885 9.550 15.923 25.780 Atomic orbital electron populations 1.21833 0.92743 1.02708 1.03148 1.23181 0.95823 0.95572 0.84447 0.90509 1.22804 0.96172 0.99580 0.98342 1.22156 0.96044 0.96406 0.96109 1.23279 0.97702 0.96831 0.97882 1.22469 0.87444 0.89763 0.97283 1.45193 1.21700 1.38610 1.32532 1.16069 0.82872 0.79365 0.81213 1.90850 1.32344 1.72749 1.55845 1.47417 1.14358 1.45036 1.29679 1.21607 0.96853 0.93501 0.85972 1.22313 0.90332 0.99379 0.95345 1.62414 1.02690 1.47749 1.13019 1.19442 0.87270 0.94208 0.91768 1.21897 1.00650 1.04804 1.32133 0.93187 1.25747 0.95285 1.00365 0.97120 1.70037 1.05636 1.38115 1.42334 0.85704 0.77353 0.80312 0.78882 1.19473 1.20554 1.20100 1.22296 0.98546 0.93408 0.93707 1.21884 0.82126 1.03640 0.92027 1.23407 1.00560 0.95296 0.97684 1.23333 0.84186 1.00622 0.93371 1.89152 1.28646 1.74896 1.39126 0.91911 0.89646 0.92543 0.89106 0.90637 0.87297 0.89727 0.89227 0.75233 0.89975 0.90043 0.96686 0.90792 0.96645 0.97660 0.92553 0.96351 0.89972 0.87698 0.89274 0.92019 0.88467 0.88327 0.90684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.53 71.98 0.69 -1.04 16 2 C 0.07 0.91 3.94 31.19 0.12 1.03 16 3 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 4 C -0.13 -1.73 5.99 31.35 0.19 -1.54 16 5 C -0.11 -1.39 1.17 -52.12 -0.06 -1.45 16 6 C -0.12 -1.47 7.12 30.81 0.22 -1.25 16 7 C 0.14 2.56 4.08 45.65 0.19 2.75 16 8 N -0.72 -15.47 5.27 -454.67 -2.40 -17.87 16 9 C 0.70 21.35 8.31 179.05 1.49 22.84 16 10 O -0.64 -24.24 15.46 -4.01 -0.06 -24.31 16 11 N -0.63 -18.56 3.00 -835.01 -2.51 -21.07 16 12 C 0.14 4.63 6.61 86.51 0.57 5.20 16 13 C 0.06 2.14 5.17 86.54 0.45 2.59 16 14 N -0.54 -21.59 4.83 -898.86 -4.34 -25.93 16 15 C 0.20 10.08 5.11 85.56 0.44 10.52 16 16 C -0.56 -30.05 7.76 25.60 0.20 -29.86 16 17 H 0.05 2.72 5.88 -2.91 -0.02 2.70 16 18 C 0.01 0.81 5.46 84.65 0.46 1.28 16 19 N -0.92 -53.57 13.29 21.45 0.28 -53.29 16 20 Si 0.95 43.39 29.54 68.60 2.03 45.42 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 23 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 24 C 0.05 1.70 5.25 86.38 0.45 2.15 16 25 C 0.13 3.09 6.59 86.35 0.57 3.66 16 26 C -0.13 -2.09 7.13 30.81 0.22 -1.87 16 27 C 0.06 0.79 7.06 72.13 0.51 1.30 16 28 O -0.40 -7.11 11.35 -148.98 -1.69 -8.80 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.08 0.73 8.14 -2.38 -0.02 0.71 16 31 H 0.06 0.74 8.13 -2.39 -0.02 0.73 16 32 H 0.09 1.02 7.80 -2.39 -0.02 1.00 16 33 H 0.07 1.10 7.53 -2.38 -0.02 1.08 16 34 H 0.11 0.99 8.12 -2.39 -0.02 0.97 16 35 H 0.08 1.01 7.90 -2.39 -0.02 0.99 16 36 H 0.09 2.16 7.53 -2.39 -0.02 2.14 16 37 H 0.41 6.44 6.22 -92.72 -0.58 5.86 16 38 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 39 H 0.08 2.73 7.09 -2.39 -0.02 2.71 16 40 H 0.01 0.65 6.61 -2.39 -0.02 0.64 16 41 H 0.07 2.85 8.11 -2.39 -0.02 2.83 16 42 H 0.02 0.83 8.07 -2.39 -0.02 0.81 16 43 H 0.01 0.29 8.14 -2.38 -0.02 0.27 16 44 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 45 H 0.02 0.71 7.11 -2.39 -0.02 0.70 16 46 H 0.08 2.72 8.06 -2.38 -0.02 2.70 16 47 H 0.11 1.80 5.63 -2.39 -0.01 1.78 16 48 H 0.09 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.06 1.16 7.89 -2.39 -0.02 1.15 16 50 H 0.10 1.37 7.99 -2.39 -0.02 1.35 16 51 H 0.10 1.12 7.86 -2.39 -0.02 1.10 16 52 H 0.08 0.78 8.12 -2.39 -0.02 0.76 16 Total: -1.00 -69.77 399.16 -1.66 -71.43 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.33 Total: 18.10 kcal Atomic # 6 Polarization: 9.61 SS G_CDS: 6.70 Total: 16.31 kcal Atomic # 7 Polarization: -109.19 SS G_CDS: -8.96 Total: -118.15 kcal Atomic # 8 Polarization: -31.35 SS G_CDS: -1.75 Total: -33.11 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Total: -69.77 -1.66 -71.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897795184.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.295 kcal (2) G-P(sol) polarization free energy of solvation -69.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds