Wall clock time and date at job start Tue Mar 31 2020 22:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.86807 * 2 1 4 4 O 1.43738 * 110.00397 * 238.91363 * 2 1 3 5 5 C 1.44383 * 106.97218 * 267.01995 * 4 2 1 6 6 C 1.54998 * 103.49096 * 319.93968 * 5 4 2 7 7 C 1.54098 * 109.87632 * 121.00360 * 2 1 3 8 8 C 1.53001 * 110.48889 * 236.35473 * 7 2 1 9 9 C 1.50704 * 110.48910 * 358.86864 * 7 2 1 10 10 O 1.21277 * 119.99957 * 350.16448 * 9 7 2 11 11 N 1.34776 * 119.99601 * 169.89087 * 9 7 2 12 12 C 1.47077 * 120.88579 * 358.22972 * 11 9 7 13 13 C 1.53693 * 108.27887 * 128.75435 * 12 11 9 14 14 N 1.46899 * 109.25928 * 54.08264 * 13 12 11 15 15 C 1.46899 * 110.99957 * 172.60878 * 14 13 12 16 16 C 1.53946 * 113.74250 * 43.04322 * 15 14 13 17 17 N 1.47813 * 86.03643 * 222.07963 * 16 15 14 18 18 C 1.36934 * 134.45882 * 204.64019 * 17 16 15 19 19 H 1.08002 * 119.99783 * 179.87196 * 18 17 16 20 20 C 1.38812 * 119.99912 * 359.87037 * 18 17 16 21 21 N 1.31612 * 120.00122 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99810 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47298 * 59.99673 * 22 20 18 24 24 H 1.48498 * 109.47127 * 180.02562 * 22 20 18 25 25 H 1.48502 * 109.46829 * 299.99840 * 22 20 18 26 26 C 1.47582 * 91.04892 * 24.54985 * 17 16 15 27 27 C 1.46899 * 111.26709 * 296.75519 * 14 13 12 28 28 C 1.47086 * 120.87883 * 178.50257 * 11 9 7 29 29 H 1.09007 * 109.47080 * 306.21697 * 1 2 3 30 30 H 1.09006 * 109.47169 * 66.21390 * 1 2 3 31 31 H 1.08999 * 109.47245 * 186.21569 * 1 2 3 32 32 H 1.09004 * 110.62270 * 78.43974 * 5 4 2 33 33 H 1.09000 * 110.61763 * 201.44116 * 5 4 2 34 34 H 1.09001 * 110.90429 * 278.82676 * 6 5 4 35 35 H 1.08997 * 110.90893 * 155.22452 * 6 5 4 36 36 H 1.09001 * 109.47603 * 190.06180 * 8 7 2 37 37 H 1.09002 * 109.46896 * 310.06002 * 8 7 2 38 38 H 1.09000 * 109.47574 * 70.05386 * 8 7 2 39 39 H 1.09002 * 109.62759 * 248.51940 * 12 11 9 40 40 H 1.08998 * 109.62547 * 9.09795 * 12 11 9 41 41 H 1.09004 * 109.64719 * 294.07734 * 13 12 11 42 42 H 1.09005 * 109.42065 * 173.94914 * 13 12 11 43 43 H 1.08996 * 112.94241 * 174.62928 * 15 14 13 44 44 H 1.09000 * 113.76980 * 336.34922 * 16 15 14 45 45 H 1.09001 * 113.76944 * 107.74273 * 16 15 14 46 46 H 0.96998 * 120.00306 * 180.02562 * 21 20 18 47 47 H 1.08997 * 113.77326 * 221.15236 * 26 17 16 48 48 H 1.09006 * 113.76981 * 89.74908 * 26 17 16 49 49 H 1.09000 * 109.49721 * 303.14514 * 27 14 13 50 50 H 1.08999 * 109.49660 * 183.06025 * 27 14 13 51 51 H 1.09006 * 109.62534 * 350.90216 * 28 11 9 52 52 H 1.08993 * 109.62530 * 111.28246 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0217 -0.6974 -1.1567 5 6 2.2334 -2.0702 -0.7628 6 6 2.8357 -1.9493 0.6603 7 6 2.0539 -0.7465 1.2421 8 6 2.9828 0.1559 2.0570 9 6 0.9060 -1.2253 2.0930 10 8 -0.2228 -0.8513 1.8546 11 7 1.1330 -2.0734 3.1155 12 6 2.4875 -2.5744 3.3943 13 6 2.7920 -2.3382 4.8822 14 7 1.7278 -2.9407 5.6961 15 6 2.0662 -2.8919 7.1248 16 6 2.6694 -1.5484 7.5734 17 7 3.6220 -2.3568 8.3631 18 6 4.3731 -2.1291 9.4852 19 1 5.0089 -2.9094 9.8769 20 6 4.3174 -0.8954 10.1191 21 7 3.5431 0.0555 9.6414 22 14 5.3426 -0.5846 11.6494 23 1 6.7814 -0.7565 11.3247 24 1 5.1054 0.7998 12.1314 25 1 4.9555 -1.5503 12.7091 26 6 3.4369 -3.5081 7.4585 27 6 0.4322 -2.2976 5.4398 28 6 0.0319 -2.5274 3.9785 29 1 -0.3634 0.6072 0.8292 30 1 -0.3634 0.4145 -0.9404 31 1 -0.3634 -1.0216 0.1113 32 1 1.2878 -2.6117 -0.7346 33 1 2.9367 -2.5589 -1.4370 34 1 3.9031 -1.7337 0.6138 35 1 2.6476 -2.8528 1.2403 36 1 3.4817 -0.4351 2.8251 37 1 3.7291 0.5990 1.3977 38 1 2.3994 0.9466 2.5287 39 1 2.5366 -3.6404 3.1722 40 1 3.2103 -2.0361 2.7813 41 1 2.8400 -1.2675 5.0810 42 1 3.7474 -2.7985 5.1341 43 1 1.2583 -3.2458 7.7651 44 1 3.1358 -0.9846 6.7655 45 1 1.9947 -0.9449 8.1806 46 1 3.5044 0.9177 10.0841 47 1 3.3739 -4.4664 7.9741 48 1 4.1293 -3.5212 6.6167 49 1 0.5130 -1.2275 5.6308 50 1 -0.3240 -2.7285 6.0960 51 1 -0.8696 -1.9579 3.7519 52 1 -0.1528 -3.5881 3.8089 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941500035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:39 Heat of formation + Delta-G solvation = 22.669466 kcal Electronic energy + Delta-G solvation = -31732.821962 eV Core-core repulsion = 27735.872866 eV Total energy + Delta-G solvation = -3996.949096 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.69 seconds Orbital eigenvalues (eV) -42.50668 -40.83931 -39.44111 -38.08333 -35.70697 -34.70604 -33.72450 -32.11364 -31.81486 -29.88273 -29.53691 -27.91329 -26.64071 -25.59118 -25.06299 -24.62265 -23.57388 -22.69021 -21.76156 -20.68023 -19.60585 -18.74856 -17.86243 -17.69371 -17.37161 -16.93869 -16.82400 -16.33144 -16.19754 -15.95692 -15.70880 -15.52753 -15.34459 -15.25447 -14.77693 -14.28828 -14.08737 -14.02322 -13.86500 -13.73919 -13.46635 -13.37090 -13.23668 -13.01606 -12.82193 -12.76780 -12.58153 -12.41081 -12.29664 -12.19762 -12.11172 -11.94733 -11.79886 -11.76549 -11.63339 -11.56283 -11.36314 -10.84539 -10.68824 -9.90905 -9.65252 -9.24778 -8.85615 -7.91535 -5.25492 1.44116 1.47153 1.49955 1.53316 1.90428 2.44459 2.82807 2.87287 3.28404 3.31419 3.35897 3.48105 3.69067 3.76604 3.83642 3.92354 4.00818 4.10194 4.16975 4.22052 4.26883 4.35627 4.39911 4.44850 4.48056 4.56510 4.58907 4.66520 4.69944 4.74834 4.75769 4.80012 4.85090 4.90326 4.95389 4.97260 4.99996 5.04998 5.05768 5.14612 5.21660 5.23030 5.36111 5.39306 5.48322 5.57850 5.89600 5.90194 6.06224 6.12957 6.39337 6.89384 7.11636 7.59559 8.54528 9.24125 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020404 B = 0.002731 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.956855 B =10250.798427 C =10560.246036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.090 3.910 3 H 0.104 0.896 4 O -0.386 6.386 5 C 0.041 3.959 6 C -0.148 4.148 7 C -0.107 4.107 8 C -0.140 4.140 9 C 0.516 3.484 10 O -0.554 6.554 11 N -0.606 5.606 12 C 0.105 3.895 13 C 0.034 3.966 14 N -0.514 5.514 15 C 0.064 3.936 16 C 0.134 3.866 17 N -0.639 5.639 18 C -0.233 4.233 19 H 0.086 0.914 20 C -0.068 4.068 21 N -0.955 5.955 22 Si 0.978 3.022 23 H -0.276 1.276 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.129 3.871 27 C 0.045 3.955 28 C 0.125 3.875 29 H 0.070 0.930 30 H 0.026 0.974 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.050 0.950 39 H 0.099 0.901 40 H 0.116 0.884 41 H 0.023 0.977 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.020 0.980 45 H 0.027 0.973 46 H 0.246 0.754 47 H 0.058 0.942 48 H 0.057 0.943 49 H 0.016 0.984 50 H 0.096 0.904 51 H 0.085 0.915 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.478 -6.788 -20.405 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.032 3.968 3 H 0.122 0.878 4 O -0.306 6.306 5 C -0.035 4.035 6 C -0.185 4.185 7 C -0.110 4.110 8 C -0.197 4.197 9 C 0.306 3.694 10 O -0.434 6.434 11 N -0.339 5.339 12 C -0.017 4.017 13 C -0.095 4.095 14 N -0.237 5.237 15 C -0.045 4.045 16 C 0.007 3.993 17 N -0.366 5.366 18 C -0.361 4.361 19 H 0.104 0.896 20 C -0.261 4.261 21 N -0.604 5.604 22 Si 0.806 3.194 23 H -0.202 1.202 24 H -0.223 1.223 25 H -0.201 1.201 26 C 0.004 3.996 27 C -0.083 4.083 28 C 0.002 3.998 29 H 0.088 0.912 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.137 0.863 34 H 0.131 0.869 35 H 0.120 0.880 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.070 0.930 39 H 0.117 0.883 40 H 0.134 0.866 41 H 0.041 0.959 42 H 0.111 0.889 43 H 0.119 0.881 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.075 0.925 49 H 0.034 0.966 50 H 0.114 0.886 51 H 0.103 0.897 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -2.969 -6.848 -20.607 21.917 hybrid contribution 0.327 1.579 1.770 2.394 sum -2.641 -5.269 -18.837 19.738 Atomic orbital electron populations 1.22539 0.94805 1.02976 0.98915 1.22767 0.94481 0.96611 0.82966 0.87847 1.88899 1.85942 1.22004 1.33711 1.23724 1.00251 0.83600 0.95925 1.23617 1.01696 0.96998 0.96222 1.22056 0.94702 0.98407 0.95845 1.22013 0.98628 0.98866 1.00207 1.20828 0.90183 0.77660 0.80754 1.90888 1.26258 1.57902 1.68372 1.48366 1.09907 1.45793 1.29840 1.22553 0.83066 1.01556 0.94505 1.22743 0.96076 0.97265 0.93415 1.62089 1.02450 1.54233 1.04939 1.23840 0.97206 0.95627 0.87847 1.22820 0.90559 0.94200 0.91719 1.46175 1.51198 1.12681 1.26591 1.19391 1.18406 0.97796 1.00516 0.89622 1.25623 1.01749 0.96032 1.02688 1.70016 1.43353 1.04371 1.42687 0.85161 0.78524 0.76445 0.79282 1.20178 1.22335 1.20123 1.22843 0.93204 0.91544 0.92002 1.22418 0.92265 0.96460 0.97180 1.21655 0.89738 1.01042 0.87331 0.91173 0.95555 0.92401 0.92996 0.86344 0.86871 0.87964 0.90518 0.89012 0.93048 0.88333 0.86594 0.95869 0.88856 0.88067 0.96213 0.95474 0.94487 0.92410 0.92529 0.96603 0.88554 0.89690 0.89130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 7.75 71.98 0.56 -2.77 16 2 C 0.09 1.86 3.75 30.97 0.12 1.98 16 3 H 0.10 1.98 7.69 -2.38 -0.02 1.96 16 4 O -0.39 -8.11 11.20 -148.98 -1.67 -9.78 16 5 C 0.04 0.61 7.67 72.67 0.56 1.17 16 6 C -0.15 -1.87 4.75 31.90 0.15 -1.72 16 7 C -0.11 -1.93 0.62 -51.94 -0.03 -1.96 16 8 C -0.14 -2.35 8.00 71.98 0.58 -1.77 16 9 C 0.52 11.91 6.24 87.66 0.55 12.46 16 10 O -0.55 -15.96 10.19 -3.02 -0.03 -15.99 16 11 N -0.61 -12.74 2.97 -817.04 -2.43 -15.17 16 12 C 0.11 1.83 4.23 86.50 0.37 2.19 16 13 C 0.03 0.83 4.65 86.54 0.40 1.23 16 14 N -0.51 -13.85 4.77 -875.07 -4.17 -18.02 16 15 C 0.06 2.24 4.05 46.67 0.19 2.43 16 16 C 0.13 6.21 6.81 86.44 0.59 6.80 16 17 N -0.64 -31.89 3.70 -716.64 -2.65 -34.54 16 18 C -0.23 -12.86 10.70 84.03 0.90 -11.96 16 19 H 0.09 4.49 7.83 -2.91 -0.02 4.46 16 20 C -0.07 -3.86 5.50 84.86 0.47 -3.40 16 21 N -0.96 -57.80 11.39 21.65 0.25 -57.56 16 22 Si 0.98 45.40 29.55 68.60 2.03 47.42 16 23 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 24 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 25 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 26 C 0.13 4.81 8.40 86.48 0.73 5.54 16 27 C 0.05 1.16 5.55 86.38 0.48 1.63 16 28 C 0.12 2.71 6.59 86.35 0.57 3.28 16 29 H 0.07 1.92 6.47 -4.09 -0.03 1.90 16 30 H 0.03 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.06 1.57 6.17 -11.83 -0.07 1.50 16 32 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 33 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.11 1.02 7.88 -2.39 -0.02 1.00 16 35 H 0.10 1.12 5.44 -2.39 -0.01 1.10 16 36 H 0.08 1.24 5.66 -2.39 -0.01 1.23 16 37 H 0.09 1.22 8.13 -2.39 -0.02 1.20 16 38 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 39 H 0.10 1.38 7.94 -2.39 -0.02 1.36 16 40 H 0.12 1.60 3.08 -2.39 -0.01 1.59 16 41 H 0.02 0.71 6.38 -2.39 -0.02 0.69 16 42 H 0.09 2.34 5.81 -2.38 -0.01 2.32 16 43 H 0.10 3.55 8.11 -2.39 -0.02 3.53 16 44 H 0.02 0.96 5.76 -2.39 -0.01 0.94 16 45 H 0.03 1.46 7.17 -2.39 -0.02 1.45 16 46 H 0.25 14.61 8.31 -92.71 -0.77 13.84 16 47 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 48 H 0.06 1.93 5.93 -2.38 -0.01 1.92 16 49 H 0.02 0.48 8.14 -2.39 -0.02 0.46 16 50 H 0.10 2.24 8.09 -2.39 -0.02 2.22 16 51 H 0.08 2.01 7.07 -2.38 -0.02 1.99 16 52 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -70.30 376.26 -0.67 -70.96 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: 0.85 Total: 17.56 kcal Atomic # 6 Polarization: 7.96 SS G_CDS: 7.16 Total: 15.12 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -9.01 Total: -125.29 kcal Atomic # 8 Polarization: -24.07 SS G_CDS: -1.70 Total: -25.77 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.42 kcal Total: -70.30 -0.67 -70.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941500035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.634 kcal (2) G-P(sol) polarization free energy of solvation -70.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.336 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.70 seconds