Wall clock time and date at job start Tue Mar 31 2020 21:33:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.89273 * 2 1 4 4 C 1.54381 * 109.83128 * 120.92950 * 2 1 3 5 5 C 1.55307 * 102.24973 * 140.87509 * 4 2 1 6 6 C 1.54946 * 100.94463 * 325.86787 * 5 4 2 7 7 H 1.09007 * 110.39258 * 277.49124 * 6 5 4 8 8 C 1.53002 * 110.31115 * 155.36113 * 6 5 4 9 9 C 1.50702 * 109.46868 * 177.83615 * 8 6 5 10 10 O 1.21278 * 120.00423 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99692 * 180.02562 * 9 8 6 12 12 C 1.47081 * 120.88114 * 0.02562 * 11 9 8 13 13 C 1.53235 * 108.52054 * 231.16282 * 12 11 9 14 14 N 1.46906 * 109.34079 * 306.16959 * 13 12 11 15 15 C 1.46898 * 110.99801 * 187.25100 * 14 13 12 16 16 C 1.53943 * 113.74572 * 271.67505 * 15 14 13 17 17 N 1.47584 * 86.11827 * 222.05271 * 16 15 14 18 18 C 1.36931 * 134.48930 * 204.64146 * 17 16 15 19 19 H 1.08006 * 120.00011 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00587 * 359.97438 * 18 17 16 21 21 N 1.31617 * 119.99418 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00299 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47185 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47242 * 120.00147 * 22 20 18 25 25 H 1.48503 * 109.47216 * 239.99955 * 22 20 18 26 26 C 1.47582 * 91.01620 * 24.63851 * 17 16 15 27 27 C 1.46896 * 111.26658 * 63.10656 * 14 13 12 28 28 C 1.47082 * 120.88386 * 179.97438 * 11 9 8 29 29 O 1.43240 * 109.83344 * 239.06745 * 2 1 3 30 30 H 1.09008 * 109.46893 * 179.47816 * 1 2 3 31 31 H 1.08994 * 109.47257 * 299.47652 * 1 2 3 32 32 H 1.09003 * 109.47273 * 59.48035 * 1 2 3 33 33 H 1.08994 * 110.85146 * 259.05988 * 4 2 1 34 34 H 1.09001 * 110.84505 * 22.48641 * 4 2 1 35 35 H 1.09012 * 111.12483 * 207.95132 * 5 4 2 36 36 H 1.09000 * 111.12651 * 83.79060 * 5 4 2 37 37 H 1.09000 * 109.46797 * 57.83679 * 8 6 5 38 38 H 1.09000 * 109.46880 * 297.83472 * 8 6 5 39 39 H 1.09002 * 109.63012 * 111.45725 * 12 11 9 40 40 H 1.09000 * 109.63054 * 350.86988 * 12 11 9 41 41 H 1.08997 * 109.49554 * 186.21402 * 13 12 11 42 42 H 1.08997 * 109.49382 * 66.13002 * 13 12 11 43 43 H 1.09003 * 112.94705 * 43.41604 * 15 14 13 44 44 H 1.09007 * 113.76669 * 336.34879 * 16 15 14 45 45 H 1.09000 * 113.77081 * 107.74653 * 16 15 14 46 46 H 0.97002 * 119.99729 * 180.02562 * 21 20 18 47 47 H 1.08996 * 113.76772 * 221.06338 * 26 17 16 48 48 H 1.08996 * 113.86876 * 89.67432 * 26 17 16 49 49 H 1.09001 * 109.49756 * 56.85119 * 27 14 13 50 50 H 1.08998 * 109.49494 * 176.90931 * 27 14 13 51 51 H 1.09001 * 109.62379 * 9.12792 * 28 11 9 52 52 H 1.08998 * 109.62760 * 248.54863 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7464 1.2457 5 6 3.2731 -1.5220 0.6768 6 6 2.7749 -1.8443 -0.7546 7 1 2.1406 -2.7308 -0.7453 8 6 3.9628 -2.0520 -1.6962 9 6 3.4581 -2.4162 -3.0687 10 8 2.2658 -2.5017 -3.2735 11 7 4.3318 -2.6478 -4.0684 12 6 5.7818 -2.5512 -3.8412 13 6 6.3834 -1.6413 -4.9174 14 7 5.9942 -2.1348 -6.2452 15 6 6.6892 -1.3943 -7.3065 16 6 5.9479 -0.1251 -7.7643 17 7 6.3123 -0.5283 -9.1364 18 6 6.4817 0.1395 -10.3198 19 1 6.7590 -0.4033 -11.2113 20 6 6.2970 1.5143 -10.3736 21 7 5.9596 2.1759 -9.2871 22 14 6.5274 2.4251 -11.9882 23 1 6.9027 1.4595 -13.0521 24 1 5.2591 3.1023 -12.3599 25 1 7.6030 3.4377 -11.8362 26 6 6.4209 -1.9402 -8.7208 27 6 4.5380 -2.0766 -6.4294 28 6 3.8607 -3.0051 -5.4151 29 8 2.0160 -0.6926 -1.1558 30 1 -0.3633 -1.0277 -0.0094 31 1 -0.3633 0.5056 0.8946 32 1 -0.3634 0.5219 -0.8853 33 1 2.3672 -0.0425 2.0165 34 1 1.2999 -1.4323 1.6324 35 1 3.4573 -2.4348 1.2435 36 1 4.1621 -0.8918 0.6507 37 1 4.5920 -2.8563 -1.3152 38 1 4.5447 -1.1322 -1.7553 39 1 6.2297 -3.5427 -3.9079 40 1 5.9705 -2.1265 -2.8553 41 1 7.4700 -1.6460 -4.8318 42 1 6.0121 -0.6252 -4.7838 43 1 7.7456 -1.2340 -7.0912 44 1 4.8756 -0.1484 -7.5698 45 1 6.4206 0.8014 -7.4384 46 1 5.8302 3.1365 -9.3247 47 1 7.2714 -2.4628 -9.1586 48 1 5.4886 -2.4982 -8.8068 49 1 4.1923 -1.0546 -6.2747 50 1 4.2862 -2.3967 -7.4405 51 1 2.7792 -2.8805 -5.4697 52 1 4.1244 -4.0401 -5.6327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000941547076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:18 Heat of formation + Delta-G solvation = -8.211361 kcal Electronic energy + Delta-G solvation = -30283.018613 eV Core-core repulsion = 26284.730424 eV Total energy + Delta-G solvation = -3998.288189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.34 seconds Orbital eigenvalues (eV) -40.46998 -39.64512 -38.65555 -36.54528 -33.74566 -33.09960 -32.46997 -31.82452 -31.17696 -29.41954 -27.93299 -26.23375 -24.96185 -24.81512 -23.50067 -22.66830 -21.80861 -21.45092 -20.73436 -19.15911 -18.28733 -17.29161 -17.13371 -16.75869 -16.18775 -15.76468 -15.34991 -15.26120 -14.95287 -14.71039 -14.50431 -14.30140 -13.97395 -13.75987 -13.69891 -13.35087 -13.11373 -12.76997 -12.47708 -12.28546 -12.20551 -12.04771 -11.94980 -11.86977 -11.71525 -11.52993 -11.32969 -11.24219 -11.13489 -11.02054 -10.93281 -10.81983 -10.64248 -10.57418 -10.13827 -9.89465 -9.66481 -9.63505 -9.48719 -8.79138 -8.61818 -7.80135 -6.84337 -5.75930 -3.08577 2.69832 2.97813 3.39056 3.44232 3.47035 3.54239 4.12600 4.16153 4.30787 4.47694 4.49988 4.57629 4.82806 4.88845 4.92738 5.05153 5.08153 5.10741 5.18402 5.23446 5.26670 5.28769 5.34079 5.37266 5.38539 5.46958 5.51696 5.53278 5.58876 5.61550 5.72963 5.79202 5.81400 5.90503 5.93404 5.96410 6.01269 6.09828 6.24068 6.38666 6.51088 6.59494 6.65064 6.97177 7.03691 7.22131 7.38617 7.45532 7.54803 7.64285 7.98935 8.24754 9.05100 9.71505 10.60566 11.40793 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.002357 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.866252 B =11874.872075 C =12803.968709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.072 3.928 3 H 0.077 0.923 4 C -0.151 4.151 5 C -0.154 4.154 6 C 0.098 3.902 7 H 0.076 0.924 8 C -0.141 4.141 9 C 0.516 3.484 10 O -0.531 6.531 11 N -0.615 5.615 12 C 0.113 3.887 13 C 0.040 3.960 14 N -0.529 5.529 15 C 0.034 3.966 16 C 0.132 3.868 17 N -0.610 5.610 18 C -0.220 4.220 19 H 0.081 0.919 20 C -0.009 4.009 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.127 3.873 27 C 0.038 3.962 28 C 0.118 3.882 29 O -0.358 6.358 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.040 0.960 43 H 0.098 0.902 44 H 0.031 0.969 45 H 0.068 0.932 46 H 0.252 0.748 47 H 0.045 0.955 48 H 0.037 0.963 49 H 0.047 0.953 50 H 0.091 0.909 51 H 0.091 0.909 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.017 -10.055 23.824 26.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.015 3.985 3 H 0.095 0.905 4 C -0.189 4.189 5 C -0.191 4.191 6 C 0.040 3.960 7 H 0.094 0.906 8 C -0.181 4.181 9 C 0.304 3.696 10 O -0.408 6.408 11 N -0.349 5.349 12 C -0.010 4.010 13 C -0.089 4.089 14 N -0.253 5.253 15 C -0.074 4.074 16 C 0.006 3.994 17 N -0.336 5.336 18 C -0.348 4.348 19 H 0.099 0.901 20 C -0.206 4.206 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.217 1.217 26 C 0.000 4.000 27 C -0.090 4.090 28 C -0.004 4.004 29 O -0.278 6.278 30 H 0.078 0.922 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.094 0.906 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.059 0.941 43 H 0.116 0.884 44 H 0.049 0.951 45 H 0.086 0.914 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.054 0.946 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.110 0.890 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.550 -10.253 23.252 25.659 hybrid contribution -0.072 1.475 -0.704 1.636 sum -3.622 -8.778 22.548 24.466 Atomic orbital electron populations 1.22124 0.95029 1.02592 1.02149 1.22719 0.94487 0.96328 0.85009 0.90481 1.23181 0.97768 0.99759 0.98146 1.23340 0.98710 1.01249 0.95829 1.22651 0.91378 0.90487 0.91453 0.90611 1.21904 0.98989 1.03998 0.93165 1.20465 0.86286 0.76654 0.86212 1.90712 1.15633 1.51186 1.83222 1.48213 1.06654 1.69492 1.10585 1.21875 0.79756 1.00762 0.98625 1.22401 1.00486 0.96616 0.89402 1.62029 1.06218 1.55245 1.01835 1.24288 0.98284 0.94986 0.89862 1.22911 0.96281 0.95760 0.84495 1.45792 1.80142 1.01395 1.06311 1.19055 1.39883 0.89732 0.86139 0.90137 1.24799 1.01982 0.96292 0.97514 1.69838 1.53364 1.07202 1.26444 0.86046 0.77326 0.79753 0.82645 1.20421 1.21766 1.21715 1.22643 0.97974 0.88682 0.90684 1.22583 0.88026 0.98813 0.99584 1.21756 0.99898 0.98607 0.80159 1.88618 1.70427 1.39627 1.29083 0.92210 0.91838 0.91810 0.90128 0.90414 0.89814 0.90092 0.87800 0.88158 0.90609 0.89893 0.89704 0.94145 0.88357 0.95108 0.91371 0.93759 0.93697 0.94570 0.93434 0.89122 0.89035 0.91107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.44 37.16 0.35 -1.08 16 2 C 0.07 0.69 4.16 -26.01 -0.11 0.58 16 3 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 4 C -0.15 -1.01 6.55 -24.78 -0.16 -1.17 16 5 C -0.15 -1.01 6.57 -24.48 -0.16 -1.17 16 6 C 0.10 0.98 2.92 -25.70 -0.08 0.91 16 7 H 0.08 0.83 8.00 -51.93 -0.42 0.41 16 8 C -0.14 -1.31 3.81 -27.88 -0.11 -1.42 16 9 C 0.52 7.00 7.61 -10.99 -0.08 6.91 16 10 O -0.53 -9.34 14.99 -6.30 -0.09 -9.43 16 11 N -0.61 -7.83 3.01 -172.43 -0.52 -8.35 16 12 C 0.11 1.13 6.50 -3.60 -0.02 1.11 16 13 C 0.04 0.51 5.61 -3.70 -0.02 0.49 16 14 N -0.53 -8.10 4.75 -228.20 -1.08 -9.19 16 15 C 0.03 0.64 4.05 -69.91 -0.28 0.36 16 16 C 0.13 3.13 6.77 -2.97 -0.02 3.11 16 17 N -0.61 -15.84 3.70 -178.06 -0.66 -16.49 16 18 C -0.22 -6.27 10.70 -15.06 -0.16 -6.43 16 19 H 0.08 2.21 7.83 -52.48 -0.41 1.80 16 20 C -0.01 -0.27 5.50 -17.43 -0.10 -0.37 16 21 N -0.92 -27.81 11.38 55.49 0.63 -27.18 16 22 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 25 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 26 C 0.13 2.61 8.42 -2.97 -0.03 2.59 16 27 C 0.04 0.61 4.39 -3.68 -0.02 0.59 16 28 C 0.12 1.64 6.60 -3.58 -0.02 1.62 16 29 O -0.36 -4.67 10.07 -47.09 -0.47 -5.15 16 30 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.48 7.85 -51.93 -0.41 0.07 16 35 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 36 H 0.08 0.48 8.06 -51.93 -0.42 0.06 16 37 H 0.10 0.64 8.00 -51.93 -0.42 0.23 16 38 H 0.10 0.87 7.66 -51.93 -0.40 0.47 16 39 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.08 0.60 6.02 -51.93 -0.31 0.29 16 41 H 0.08 0.95 8.02 -51.93 -0.42 0.53 16 42 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 1.80 8.01 -51.93 -0.42 1.39 16 44 H 0.03 0.76 5.61 -51.92 -0.29 0.47 16 45 H 0.07 1.81 7.15 -51.93 -0.37 1.44 16 46 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 47 H 0.04 0.89 8.14 -51.93 -0.42 0.46 16 48 H 0.04 0.73 6.35 -51.93 -0.33 0.40 16 49 H 0.05 0.87 6.49 -51.93 -0.34 0.54 16 50 H 0.09 1.51 6.16 -51.93 -0.32 1.19 16 51 H 0.09 1.38 7.06 -51.93 -0.37 1.02 16 52 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 LS Contribution 396.40 15.07 5.97 5.97 Total: -1.00 -34.98 396.40 -11.25 -46.24 By element: Atomic # 1 Polarization: 8.51 SS G_CDS: -8.99 Total: -0.48 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: -1.02 Total: 6.62 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.63 Total: -61.21 kcal Atomic # 8 Polarization: -14.01 SS G_CDS: -0.57 Total: -14.58 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.98 -11.25 -46.24 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941547076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.025 kcal (2) G-P(sol) polarization free energy of solvation -34.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.34 seconds