Wall clock time and date at job start Tue Mar 31 2020 21:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.89273 * 2 1 4 4 C 1.54381 * 109.83128 * 120.92950 * 2 1 3 5 5 C 1.55307 * 102.24973 * 140.87509 * 4 2 1 6 6 C 1.54946 * 100.94463 * 325.86787 * 5 4 2 7 7 H 1.09007 * 110.39258 * 277.49124 * 6 5 4 8 8 C 1.53002 * 110.31115 * 155.36113 * 6 5 4 9 9 C 1.50702 * 109.46868 * 177.83615 * 8 6 5 10 10 O 1.21278 * 120.00423 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99692 * 180.02562 * 9 8 6 12 12 C 1.47081 * 120.88114 * 0.02562 * 11 9 8 13 13 C 1.53235 * 108.52054 * 231.16282 * 12 11 9 14 14 N 1.46906 * 109.34079 * 306.16959 * 13 12 11 15 15 C 1.46898 * 110.99801 * 187.25100 * 14 13 12 16 16 C 1.53943 * 113.74572 * 271.67505 * 15 14 13 17 17 N 1.47584 * 86.11827 * 222.05271 * 16 15 14 18 18 C 1.36931 * 134.48930 * 204.64146 * 17 16 15 19 19 H 1.08006 * 120.00011 * 179.97438 * 18 17 16 20 20 C 1.38813 * 120.00587 * 359.97438 * 18 17 16 21 21 N 1.31617 * 119.99418 * 0.02562 * 20 18 17 22 22 Si 1.86798 * 120.00299 * 180.02562 * 20 18 17 23 23 H 1.48496 * 109.47185 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47242 * 120.00147 * 22 20 18 25 25 H 1.48503 * 109.47216 * 239.99955 * 22 20 18 26 26 C 1.47582 * 91.01620 * 24.63851 * 17 16 15 27 27 C 1.46896 * 111.26658 * 63.10656 * 14 13 12 28 28 C 1.47082 * 120.88386 * 179.97438 * 11 9 8 29 29 O 1.43240 * 109.83344 * 239.06745 * 2 1 3 30 30 H 1.09008 * 109.46893 * 179.47816 * 1 2 3 31 31 H 1.08994 * 109.47257 * 299.47652 * 1 2 3 32 32 H 1.09003 * 109.47273 * 59.48035 * 1 2 3 33 33 H 1.08994 * 110.85146 * 259.05988 * 4 2 1 34 34 H 1.09001 * 110.84505 * 22.48641 * 4 2 1 35 35 H 1.09012 * 111.12483 * 207.95132 * 5 4 2 36 36 H 1.09000 * 111.12651 * 83.79060 * 5 4 2 37 37 H 1.09000 * 109.46797 * 57.83679 * 8 6 5 38 38 H 1.09000 * 109.46880 * 297.83472 * 8 6 5 39 39 H 1.09002 * 109.63012 * 111.45725 * 12 11 9 40 40 H 1.09000 * 109.63054 * 350.86988 * 12 11 9 41 41 H 1.08997 * 109.49554 * 186.21402 * 13 12 11 42 42 H 1.08997 * 109.49382 * 66.13002 * 13 12 11 43 43 H 1.09003 * 112.94705 * 43.41604 * 15 14 13 44 44 H 1.09007 * 113.76669 * 336.34879 * 16 15 14 45 45 H 1.09000 * 113.77081 * 107.74653 * 16 15 14 46 46 H 0.97002 * 119.99729 * 180.02562 * 21 20 18 47 47 H 1.08996 * 113.76772 * 221.06338 * 26 17 16 48 48 H 1.08996 * 113.86876 * 89.67432 * 26 17 16 49 49 H 1.09001 * 109.49756 * 56.85119 * 27 14 13 50 50 H 1.08998 * 109.49494 * 176.90931 * 27 14 13 51 51 H 1.09001 * 109.62379 * 9.12792 * 28 11 9 52 52 H 1.08998 * 109.62760 * 248.54863 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9009 1.0250 0.0000 4 6 2.0537 -0.7464 1.2457 5 6 3.2731 -1.5220 0.6768 6 6 2.7749 -1.8443 -0.7546 7 1 2.1406 -2.7308 -0.7453 8 6 3.9628 -2.0520 -1.6962 9 6 3.4581 -2.4162 -3.0687 10 8 2.2658 -2.5017 -3.2735 11 7 4.3318 -2.6478 -4.0684 12 6 5.7818 -2.5512 -3.8412 13 6 6.3834 -1.6413 -4.9174 14 7 5.9942 -2.1348 -6.2452 15 6 6.6892 -1.3943 -7.3065 16 6 5.9479 -0.1251 -7.7643 17 7 6.3123 -0.5283 -9.1364 18 6 6.4817 0.1395 -10.3198 19 1 6.7590 -0.4033 -11.2113 20 6 6.2970 1.5143 -10.3736 21 7 5.9596 2.1759 -9.2871 22 14 6.5274 2.4251 -11.9882 23 1 6.9027 1.4595 -13.0521 24 1 5.2591 3.1023 -12.3599 25 1 7.6030 3.4377 -11.8362 26 6 6.4209 -1.9402 -8.7208 27 6 4.5380 -2.0766 -6.4294 28 6 3.8607 -3.0051 -5.4151 29 8 2.0160 -0.6926 -1.1558 30 1 -0.3633 -1.0277 -0.0094 31 1 -0.3633 0.5056 0.8946 32 1 -0.3634 0.5219 -0.8853 33 1 2.3672 -0.0425 2.0165 34 1 1.2999 -1.4323 1.6324 35 1 3.4573 -2.4348 1.2435 36 1 4.1621 -0.8918 0.6507 37 1 4.5920 -2.8563 -1.3152 38 1 4.5447 -1.1322 -1.7553 39 1 6.2297 -3.5427 -3.9079 40 1 5.9705 -2.1265 -2.8553 41 1 7.4700 -1.6460 -4.8318 42 1 6.0121 -0.6252 -4.7838 43 1 7.7456 -1.2340 -7.0912 44 1 4.8756 -0.1484 -7.5698 45 1 6.4206 0.8014 -7.4384 46 1 5.8302 3.1365 -9.3247 47 1 7.2714 -2.4628 -9.1586 48 1 5.4886 -2.4982 -8.8068 49 1 4.1923 -1.0546 -6.2747 50 1 4.2862 -2.3967 -7.4405 51 1 2.7792 -2.8805 -5.4697 52 1 4.1244 -4.0401 -5.6327 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941547076.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:17 Heat of formation + Delta-G solvation = -32.522679 kcal Electronic energy + Delta-G solvation = -30284.072831 eV Core-core repulsion = 26284.730424 eV Total energy + Delta-G solvation = -3999.342407 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.51139 -40.69105 -39.91277 -37.90698 -35.18967 -33.99335 -33.67651 -33.15215 -32.22867 -30.32540 -29.53399 -27.69379 -26.64249 -25.80568 -24.59984 -24.34834 -22.66973 -22.34240 -21.64493 -20.47365 -19.59073 -18.76427 -18.23419 -17.94824 -17.12374 -17.01196 -16.75254 -16.62892 -16.18739 -16.15031 -15.62466 -15.52499 -15.25733 -14.85660 -14.54861 -14.27992 -14.01865 -13.96001 -13.84555 -13.55598 -13.40413 -13.30586 -13.18733 -12.88524 -12.84000 -12.76189 -12.63878 -12.53059 -12.28267 -12.20251 -11.99636 -11.97898 -11.89045 -11.76275 -11.66617 -11.65719 -11.40976 -10.90233 -10.72545 -10.42402 -9.74696 -9.25350 -8.88924 -7.93776 -5.28378 1.42123 1.43716 1.54171 1.68573 2.00485 2.42637 2.83642 2.88676 3.26249 3.47922 3.52951 3.58790 3.83211 3.83520 3.91036 3.95288 4.03099 4.13775 4.18218 4.23451 4.26066 4.38461 4.40148 4.47486 4.48193 4.56146 4.60030 4.61284 4.67931 4.74542 4.78024 4.86682 4.88974 4.90957 4.92577 4.93318 4.96713 5.07038 5.12706 5.13377 5.19487 5.24294 5.34331 5.36718 5.46055 5.50529 5.87858 6.01812 6.15974 6.27037 6.48697 6.87509 7.23051 7.56966 8.52459 9.22509 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016391 B = 0.002357 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1707.866252 B =11874.872075 C =12803.968709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.060 3.940 3 H 0.077 0.923 4 C -0.145 4.145 5 C -0.141 4.141 6 C 0.088 3.912 7 H 0.057 0.943 8 C -0.133 4.133 9 C 0.507 3.493 10 O -0.583 6.583 11 N -0.618 5.618 12 C 0.117 3.883 13 C 0.034 3.966 14 N -0.514 5.514 15 C 0.068 3.932 16 C 0.132 3.868 17 N -0.641 5.641 18 C -0.231 4.231 19 H 0.087 0.913 20 C -0.072 4.072 21 N -0.956 5.956 22 Si 0.981 3.019 23 H -0.262 1.262 24 H -0.295 1.295 25 H -0.289 1.289 26 C 0.128 3.872 27 C 0.048 3.952 28 C 0.126 3.874 29 O -0.400 6.400 30 H 0.051 0.949 31 H 0.087 0.913 32 H 0.042 0.958 33 H 0.101 0.899 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.094 0.906 37 H 0.146 0.854 38 H 0.112 0.888 39 H 0.100 0.900 40 H 0.120 0.880 41 H 0.111 0.889 42 H 0.018 0.982 43 H 0.112 0.888 44 H 0.013 0.987 45 H 0.031 0.969 46 H 0.247 0.753 47 H 0.062 0.938 48 H 0.045 0.955 49 H 0.013 0.987 50 H 0.078 0.922 51 H 0.071 0.929 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.807 -11.780 25.920 28.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.002 3.998 3 H 0.095 0.905 4 C -0.182 4.182 5 C -0.179 4.179 6 C 0.030 3.970 7 H 0.075 0.925 8 C -0.172 4.172 9 C 0.297 3.703 10 O -0.462 6.462 11 N -0.351 5.351 12 C -0.005 4.005 13 C -0.094 4.094 14 N -0.238 5.238 15 C -0.041 4.041 16 C 0.005 3.995 17 N -0.368 5.368 18 C -0.360 4.360 19 H 0.104 0.896 20 C -0.264 4.264 21 N -0.606 5.606 22 Si 0.809 3.191 23 H -0.186 1.186 24 H -0.223 1.223 25 H -0.216 1.216 26 C 0.003 3.997 27 C -0.081 4.081 28 C 0.003 3.997 29 O -0.321 6.321 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.061 0.939 33 H 0.119 0.881 34 H 0.100 0.900 35 H 0.125 0.875 36 H 0.112 0.888 37 H 0.164 0.836 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.138 0.862 41 H 0.129 0.871 42 H 0.036 0.964 43 H 0.129 0.871 44 H 0.030 0.970 45 H 0.050 0.950 46 H 0.056 0.944 47 H 0.080 0.920 48 H 0.063 0.937 49 H 0.031 0.969 50 H 0.097 0.903 51 H 0.090 0.910 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -1.303 -12.027 25.369 28.105 hybrid contribution -0.816 1.983 -1.361 2.540 sum -2.118 -10.043 24.008 26.110 Atomic orbital electron populations 1.22126 0.95243 1.02053 1.02319 1.22935 0.94526 0.96606 0.85708 0.90477 1.23176 0.97967 0.99971 0.97113 1.23326 0.98775 1.02450 0.93310 1.22813 0.91240 0.89084 0.93845 0.92478 1.22007 0.99227 1.05811 0.90153 1.21333 0.85706 0.75480 0.87795 1.90691 1.17963 1.53355 1.84225 1.48376 1.08057 1.68904 1.09779 1.22114 0.77524 1.01604 0.99236 1.22629 1.02295 0.96166 0.88356 1.62084 1.05349 1.53852 1.02488 1.23847 0.98320 0.91588 0.90377 1.22812 0.95503 0.96688 0.84496 1.46214 1.80216 1.04036 1.06309 1.19485 1.38795 0.90315 0.87382 0.89557 1.25694 1.02531 0.97296 1.00923 1.70048 1.55017 1.06931 1.28565 0.84969 0.76721 0.78400 0.79007 1.18599 1.22270 1.21629 1.22790 0.98883 0.86488 0.91581 1.22427 0.88591 0.97331 0.99787 1.21549 0.98567 0.98882 0.80693 1.88587 1.71265 1.40776 1.31457 0.93006 0.89419 0.93903 0.88066 0.89992 0.87453 0.88765 0.83617 0.86971 0.88231 0.86167 0.87100 0.96363 0.87053 0.96988 0.95040 0.94446 0.91991 0.93734 0.96911 0.90335 0.91016 0.89135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.92 9.44 71.98 0.68 -2.24 16 2 C 0.06 1.11 4.16 31.06 0.13 1.24 16 3 H 0.08 1.37 8.14 -2.38 -0.02 1.35 16 4 C -0.14 -1.61 6.55 31.86 0.21 -1.40 16 5 C -0.14 -1.40 6.57 32.05 0.21 -1.19 16 6 C 0.09 1.65 2.92 31.26 0.09 1.74 16 7 H 0.06 1.25 8.00 -2.38 -0.02 1.23 16 8 C -0.13 -2.13 3.81 29.85 0.11 -2.02 16 9 C 0.51 13.38 7.61 87.66 0.67 14.05 16 10 O -0.58 -21.25 14.99 8.31 0.12 -21.12 16 11 N -0.62 -14.82 3.01 -817.85 -2.46 -17.28 16 12 C 0.12 1.90 6.50 86.35 0.56 2.46 16 13 C 0.03 0.78 5.61 86.38 0.48 1.26 16 14 N -0.51 -15.07 4.75 -875.90 -4.16 -19.23 16 15 C 0.07 2.50 4.05 46.67 0.19 2.69 16 16 C 0.13 6.51 6.77 86.48 0.59 7.09 16 17 N -0.64 -33.84 3.70 -717.25 -2.65 -36.49 16 18 C -0.23 -13.33 10.70 84.03 0.90 -12.43 16 19 H 0.09 4.73 7.83 -2.91 -0.02 4.70 16 20 C -0.07 -4.23 5.50 84.86 0.47 -3.76 16 21 N -0.96 -59.90 11.38 21.65 0.25 -59.66 16 22 Si 0.98 46.96 29.55 68.60 2.03 48.99 16 23 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 24 H -0.30 -14.25 7.11 99.48 0.71 -13.55 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 C 0.13 5.17 8.42 86.48 0.73 5.90 16 27 C 0.05 1.54 4.39 86.40 0.38 1.92 16 28 C 0.13 3.49 6.60 86.36 0.57 4.06 16 29 O -0.40 -10.64 10.07 -137.65 -1.39 -12.03 16 30 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 31 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.04 0.92 8.14 -2.39 -0.02 0.91 16 33 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.84 7.85 -2.39 -0.02 0.82 16 35 H 0.11 0.59 8.14 -2.38 -0.02 0.57 16 36 H 0.09 0.72 8.06 -2.39 -0.02 0.70 16 37 H 0.15 1.09 8.00 -2.39 -0.02 1.07 16 38 H 0.11 1.58 7.66 -2.39 -0.02 1.56 16 39 H 0.10 1.28 8.14 -2.39 -0.02 1.26 16 40 H 0.12 1.12 6.02 -2.39 -0.01 1.11 16 41 H 0.11 2.04 8.02 -2.39 -0.02 2.02 16 42 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 43 H 0.11 3.87 8.01 -2.39 -0.02 3.85 16 44 H 0.01 0.65 5.61 -2.38 -0.01 0.64 16 45 H 0.03 1.76 7.15 -2.39 -0.02 1.74 16 46 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 47 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 48 H 0.05 1.76 6.35 -2.39 -0.02 1.75 16 49 H 0.01 0.50 6.49 -2.39 -0.02 0.48 16 50 H 0.08 2.70 6.16 -2.39 -0.01 2.69 16 51 H 0.07 2.28 7.06 -2.39 -0.02 2.27 16 52 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -81.88 396.40 -0.41 -82.29 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: 0.89 Total: 15.16 kcal Atomic # 6 Polarization: 12.42 SS G_CDS: 6.97 Total: 19.38 kcal Atomic # 7 Polarization: -123.63 SS G_CDS: -9.03 Total: -132.66 kcal Atomic # 8 Polarization: -31.89 SS G_CDS: -1.26 Total: -33.16 kcal Atomic # 14 Polarization: 46.96 SS G_CDS: 2.03 Total: 48.99 kcal Total: -81.88 -0.41 -82.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941547076.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.766 kcal (2) G-P(sol) polarization free energy of solvation -81.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.117 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds