Wall clock time and date at job start Tue Mar 31 2020 21:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 110.54980 * 2 1 4 4 C 1.54997 * 110.61472 * 236.95273 * 2 1 3 5 5 C 1.54810 * 102.09240 * 204.47323 * 4 2 1 6 6 C 1.54101 * 104.18639 * 20.88217 * 5 4 2 7 7 H 1.08997 * 110.00815 * 242.53493 * 6 5 4 8 8 C 1.52999 * 109.88023 * 121.45087 * 6 5 4 9 9 C 1.50704 * 109.47203 * 175.71349 * 8 6 5 10 10 O 1.21283 * 120.00075 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99834 * 180.02562 * 9 8 6 12 12 C 1.47079 * 120.88487 * 359.72406 * 11 9 8 13 13 C 1.53691 * 108.27988 * 128.75514 * 12 11 9 14 14 N 1.46906 * 109.25859 * 54.07872 * 13 12 11 15 15 C 1.46892 * 111.00133 * 172.60796 * 14 13 12 16 16 C 1.53949 * 113.74428 * 43.04785 * 15 14 13 17 17 N 1.47810 * 86.03708 * 222.08415 * 16 15 14 18 18 C 1.36942 * 134.45426 * 204.64475 * 17 16 15 19 19 H 1.07999 * 120.00062 * 179.86588 * 18 17 16 20 20 C 1.38811 * 119.99783 * 359.85978 * 18 17 16 21 21 N 1.31614 * 120.00392 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99606 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46959 * 60.00755 * 22 20 18 24 24 H 1.48505 * 109.46828 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47307 * 300.00309 * 22 20 18 26 26 C 1.47575 * 91.05587 * 24.54913 * 17 16 15 27 27 C 1.46890 * 111.27109 * 296.76247 * 14 13 12 28 28 C 1.47083 * 120.87841 * 180.02562 * 11 9 8 29 29 O 1.43749 * 107.29638 * 2.02989 * 6 5 4 30 30 H 1.09001 * 109.47002 * 298.56958 * 1 2 3 31 31 H 1.08993 * 109.46955 * 58.57395 * 1 2 3 32 32 H 1.09000 * 109.47050 * 178.57224 * 1 2 3 33 33 H 1.09006 * 110.90676 * 322.67101 * 4 2 1 34 34 H 1.09002 * 110.91071 * 86.27894 * 4 2 1 35 35 H 1.08990 * 110.49098 * 262.20706 * 5 4 2 36 36 H 1.09004 * 110.60011 * 139.60946 * 5 4 2 37 37 H 1.08998 * 109.47715 * 295.71476 * 8 6 5 38 38 H 1.09001 * 109.47271 * 55.71886 * 8 6 5 39 39 H 1.09001 * 109.62929 * 248.52544 * 12 11 9 40 40 H 1.09001 * 109.62878 * 9.10359 * 12 11 9 41 41 H 1.09001 * 109.64950 * 294.08438 * 13 12 11 42 42 H 1.08993 * 109.42620 * 173.94832 * 13 12 11 43 43 H 1.09004 * 112.94679 * 174.64101 * 15 14 13 44 44 H 1.09004 * 113.76329 * 336.35117 * 16 15 14 45 45 H 1.08996 * 113.76820 * 107.74089 * 16 15 14 46 46 H 0.97002 * 120.00452 * 179.97438 * 21 20 18 47 47 H 1.08997 * 113.77006 * 221.15605 * 26 17 16 48 48 H 1.09000 * 113.87631 * 89.76543 * 26 17 16 49 49 H 1.09005 * 109.49488 * 303.14145 * 27 14 13 50 50 H 1.09000 * 109.49531 * 183.06140 * 27 14 13 51 51 H 1.08994 * 109.63048 * 350.89811 * 28 11 9 52 52 H 1.08998 * 109.62898 * 111.28204 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9127 1.0206 0.0000 4 6 2.0758 -0.7911 -1.2160 5 6 3.4795 -1.2178 -0.7219 6 6 3.3840 -1.1243 0.8133 7 1 4.0856 -0.3779 1.1859 8 6 3.6935 -2.4863 1.4378 9 6 3.7011 -2.3604 2.9395 10 8 3.4801 -1.2870 3.4592 11 7 3.9533 -3.4405 3.7050 12 6 4.2178 -4.7527 3.0956 13 6 5.5179 -5.3102 3.6965 14 7 5.4106 -5.3167 5.1616 15 6 6.5582 -6.0024 5.7704 16 6 7.9096 -5.6375 5.1297 17 7 8.2277 -7.0778 5.2257 18 6 9.3885 -7.8013 5.2916 19 1 9.3503 -8.8784 5.3607 20 6 10.6143 -7.1503 5.2696 21 7 10.6609 -5.8376 5.1859 22 14 12.1977 -8.1372 5.3603 23 1 12.2662 -9.0700 4.2070 24 1 13.3597 -7.2134 5.3201 25 1 12.2259 -8.9125 6.6265 26 6 6.7928 -7.4227 5.2243 27 6 5.2698 -3.9541 5.6917 28 6 3.9650 -3.3398 5.1724 29 8 2.0385 -0.7337 1.1348 30 1 -0.3633 0.4915 0.9025 31 1 -0.3633 0.5358 -0.8769 32 1 -0.3633 -1.0274 -0.0256 33 1 1.4549 -1.6627 -1.4234 34 1 2.1509 -0.1507 -2.0949 35 1 4.2406 -0.5349 -1.0990 36 1 3.6997 -2.2403 -1.0288 37 1 2.9315 -3.2054 1.1374 38 1 4.6707 -2.8286 1.0971 39 1 3.3913 -5.4299 3.3112 40 1 4.3303 -4.6396 2.0173 41 1 6.3583 -4.6843 3.3963 42 1 5.6755 -6.3276 3.3388 43 1 6.5589 -5.9452 6.8589 44 1 7.8262 -5.2732 4.1058 45 1 8.5370 -5.0050 5.7577 46 1 11.5174 -5.3826 5.1708 47 1 6.5302 -8.2127 5.9278 48 1 6.3789 -7.5845 4.2290 49 1 6.1137 -3.3471 5.3636 50 1 5.2474 -3.9880 6.7810 51 1 3.9103 -2.2921 5.4679 52 1 3.1128 -3.8811 5.5833 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000941547078.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:31 Heat of formation + Delta-G solvation = -30.829469 kcal Electronic energy + Delta-G solvation = -30223.914437 eV Core-core repulsion = 26224.645453 eV Total energy + Delta-G solvation = -3999.268984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.52516 -40.68334 -39.88561 -37.86694 -35.18676 -34.05866 -33.62281 -33.12518 -32.17659 -30.31851 -29.56239 -27.69393 -26.64578 -25.61476 -24.73069 -24.30775 -22.70473 -22.14402 -21.76829 -20.63637 -19.58949 -18.74108 -18.28904 -17.56989 -17.06555 -16.95302 -16.88450 -16.70934 -16.19483 -16.05633 -15.64599 -15.62736 -15.44524 -14.79037 -14.54133 -14.45850 -14.00556 -13.86721 -13.75203 -13.42174 -13.34595 -13.27575 -13.19792 -12.89199 -12.85592 -12.77230 -12.66139 -12.48914 -12.29720 -12.23107 -12.06306 -12.01805 -11.82188 -11.75267 -11.71868 -11.51295 -11.37075 -10.84939 -10.74511 -10.56690 -9.75479 -9.24994 -8.86074 -7.91714 -5.26001 1.43755 1.47312 1.53386 1.66868 1.99049 2.44427 2.83795 2.90698 3.27966 3.47114 3.49914 3.64327 3.78805 3.84739 3.93498 3.98011 4.01761 4.04672 4.17555 4.25706 4.26616 4.35910 4.38301 4.45622 4.49445 4.55355 4.58493 4.61769 4.70229 4.73582 4.78244 4.81991 4.89258 4.94687 4.95746 4.96330 5.00942 5.09112 5.10850 5.16483 5.22161 5.25397 5.29590 5.38312 5.46198 5.50588 5.89361 6.06727 6.11635 6.12977 6.45213 6.88963 7.20337 7.59104 8.54255 9.24128 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.020443 B = 0.002216 C = 0.002105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.301077 B =12633.276526 C =13295.894505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 H 0.063 0.937 4 C -0.142 4.142 5 C -0.148 4.148 6 C 0.088 3.912 7 H 0.048 0.952 8 C -0.135 4.135 9 C 0.509 3.491 10 O -0.580 6.580 11 N -0.617 5.617 12 C 0.120 3.880 13 C 0.033 3.967 14 N -0.516 5.516 15 C 0.064 3.936 16 C 0.134 3.866 17 N -0.640 5.640 18 C -0.231 4.231 19 H 0.087 0.913 20 C -0.071 4.071 21 N -0.957 5.957 22 Si 0.980 3.020 23 H -0.275 1.275 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.129 3.871 27 C 0.047 3.953 28 C 0.124 3.876 29 O -0.388 6.388 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.084 0.916 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.128 0.872 39 H 0.095 0.905 40 H 0.115 0.885 41 H 0.023 0.977 42 H 0.095 0.905 43 H 0.101 0.899 44 H 0.021 0.979 45 H 0.027 0.973 46 H 0.247 0.753 47 H 0.058 0.942 48 H 0.058 0.942 49 H 0.015 0.985 50 H 0.096 0.904 51 H 0.079 0.921 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.909 7.206 -13.294 25.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.002 4.002 3 H 0.081 0.919 4 C -0.179 4.179 5 C -0.186 4.186 6 C 0.030 3.970 7 H 0.066 0.934 8 C -0.174 4.174 9 C 0.299 3.701 10 O -0.459 6.459 11 N -0.351 5.351 12 C -0.003 4.003 13 C -0.095 4.095 14 N -0.240 5.240 15 C -0.046 4.046 16 C 0.007 3.993 17 N -0.367 5.367 18 C -0.360 4.360 19 H 0.105 0.895 20 C -0.264 4.264 21 N -0.606 5.606 22 Si 0.808 3.192 23 H -0.201 1.201 24 H -0.223 1.223 25 H -0.201 1.201 26 C 0.005 3.995 27 C -0.081 4.081 28 C 0.001 3.999 29 O -0.308 6.308 30 H 0.068 0.932 31 H 0.110 0.890 32 H 0.081 0.919 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.103 0.897 36 H 0.118 0.882 37 H 0.140 0.860 38 H 0.145 0.855 39 H 0.113 0.887 40 H 0.133 0.867 41 H 0.041 0.959 42 H 0.113 0.887 43 H 0.119 0.881 44 H 0.038 0.962 45 H 0.045 0.955 46 H 0.055 0.945 47 H 0.076 0.924 48 H 0.076 0.924 49 H 0.034 0.966 50 H 0.114 0.886 51 H 0.097 0.903 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -21.253 7.400 -12.682 25.832 hybrid contribution 2.399 0.376 0.080 2.429 sum -18.854 7.776 -12.602 23.974 Atomic orbital electron populations 1.21760 0.92406 1.02958 1.02769 1.23364 0.96011 0.95415 0.85450 0.91936 1.23162 0.95683 1.01071 0.98022 1.23023 0.98560 1.04544 0.92438 1.22475 0.84796 0.94525 0.95247 0.93392 1.22036 1.06132 0.99401 0.89826 1.21212 0.75123 0.82847 0.90895 1.90680 1.50670 1.28676 1.75907 1.48358 1.69918 1.09831 1.06967 1.22135 0.96781 0.82695 0.98649 1.22740 0.96768 1.01974 0.88032 1.62074 1.40011 1.16202 1.05673 1.23847 0.86912 0.94994 0.98816 1.22817 0.92971 0.87052 0.96443 1.46190 1.01039 1.03764 1.85712 1.19402 0.83602 0.90830 1.42155 0.89535 1.25667 1.00832 0.96796 1.03078 1.70026 1.24357 1.07973 1.58248 0.85130 0.78474 0.77209 0.78410 1.20090 1.22335 1.20085 1.22839 0.82777 0.95228 0.98702 1.22403 0.96313 0.88488 1.00945 1.21598 0.97319 1.01312 0.79633 1.89000 1.27846 1.73802 1.40177 0.93175 0.89044 0.91908 0.89623 0.88533 0.89687 0.88200 0.85964 0.85455 0.88712 0.86715 0.95885 0.88662 0.88123 0.96182 0.95468 0.94459 0.92377 0.92442 0.96617 0.88615 0.90285 0.89476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.94 9.66 71.98 0.70 -1.24 16 2 C 0.05 0.92 3.98 31.28 0.12 1.04 16 3 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 4 C -0.14 -1.56 6.59 31.90 0.21 -1.35 16 5 C -0.15 -1.80 6.64 31.58 0.21 -1.59 16 6 C 0.09 1.77 2.94 30.97 0.09 1.86 16 7 H 0.05 1.19 7.95 -2.39 -0.02 1.17 16 8 C -0.13 -2.41 3.56 29.85 0.11 -2.31 16 9 C 0.51 13.64 7.60 87.66 0.67 14.30 16 10 O -0.58 -20.70 14.95 8.69 0.13 -20.57 16 11 N -0.62 -14.97 3.00 -816.97 -2.45 -17.42 16 12 C 0.12 2.27 6.53 86.50 0.57 2.83 16 13 C 0.03 0.88 4.65 86.53 0.40 1.28 16 14 N -0.52 -14.95 4.77 -874.98 -4.17 -19.12 16 15 C 0.06 2.31 4.05 46.67 0.19 2.50 16 16 C 0.13 6.38 6.81 86.44 0.59 6.96 16 17 N -0.64 -32.54 3.70 -716.63 -2.65 -35.20 16 18 C -0.23 -12.95 10.70 84.03 0.90 -12.05 16 19 H 0.09 4.58 7.83 -2.91 -0.02 4.56 16 20 C -0.07 -4.08 5.50 84.86 0.47 -3.62 16 21 N -0.96 -58.70 11.39 21.65 0.25 -58.45 16 22 Si 0.98 45.85 29.55 68.60 2.03 47.88 16 23 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 24 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 25 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 26 C 0.13 4.96 8.40 86.49 0.73 5.69 16 27 C 0.05 1.32 5.55 86.40 0.48 1.80 16 28 C 0.12 3.15 6.60 86.36 0.57 3.72 16 29 O -0.39 -9.56 10.24 -137.25 -1.41 -10.96 16 30 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.85 8.13 -2.39 -0.02 0.83 16 33 H 0.09 0.83 8.05 -2.38 -0.02 0.81 16 34 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.10 0.85 7.70 -2.38 -0.02 0.83 16 37 H 0.12 1.65 7.99 -2.39 -0.02 1.63 16 38 H 0.13 1.70 7.67 -2.39 -0.02 1.68 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.49 6.02 -2.39 -0.01 1.48 16 41 H 0.02 0.73 6.38 -2.39 -0.02 0.72 16 42 H 0.10 2.49 5.81 -2.39 -0.01 2.47 16 43 H 0.10 3.67 8.11 -2.39 -0.02 3.65 16 44 H 0.02 0.99 5.76 -2.38 -0.01 0.98 16 45 H 0.03 1.50 7.16 -2.39 -0.02 1.48 16 46 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 47 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 48 H 0.06 2.01 5.93 -2.39 -0.01 2.00 16 49 H 0.02 0.52 8.14 -2.38 -0.02 0.50 16 50 H 0.10 2.45 8.08 -2.39 -0.02 2.43 16 51 H 0.08 2.23 7.06 -2.39 -0.02 2.21 16 52 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -77.05 395.91 -0.39 -77.44 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: 0.89 Total: 16.57 kcal Atomic # 6 Polarization: 12.84 SS G_CDS: 6.99 Total: 19.83 kcal Atomic # 7 Polarization: -121.16 SS G_CDS: -9.03 Total: -130.19 kcal Atomic # 8 Polarization: -30.26 SS G_CDS: -1.28 Total: -31.53 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 2.03 Total: 47.88 kcal Total: -77.05 -0.39 -77.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000941547078.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.615 kcal (2) G-P(sol) polarization free energy of solvation -77.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds