Wall clock time and date at job start Tue Mar 31 2020 21:03:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70362 * 2 1 4 4 C 1.53628 * 109.65961 * 120.59245 * 2 1 3 5 5 C 1.53044 * 109.23830 * 174.54483 * 4 2 1 6 6 C 1.53035 * 109.54382 * 298.51222 * 5 4 2 7 7 C 1.53196 * 109.31286 * 61.36407 * 6 5 4 8 8 H 1.08996 * 109.70758 * 185.51529 * 7 6 5 9 9 C 1.52996 * 109.58795 * 65.15281 * 7 6 5 10 10 N 1.46926 * 109.58670 * 239.64221 * 2 1 3 11 11 C 1.34772 * 120.62910 * 6.62915 * 10 2 1 12 12 O 1.21350 * 120.00414 * 5.35443 * 11 10 2 13 13 C 1.49449 * 120.00254 * 185.35266 * 11 10 2 14 14 O 1.21347 * 120.00181 * 84.53161 * 13 11 10 15 15 N 1.34776 * 120.00198 * 264.54186 * 13 11 10 16 16 C 1.48211 * 119.97258 * 184.95294 * 15 13 11 17 17 C 1.47140 * 110.34586 * 102.46235 * 16 15 13 18 18 C 1.53802 * 111.83849 * 58.29889 * 17 16 15 19 19 N 1.43465 * 107.95901 * 281.66799 * 18 17 16 20 20 C 1.36934 * 118.93778 * 273.61047 * 19 18 17 21 21 H 1.07997 * 120.00508 * 27.13262 * 20 19 18 22 22 C 1.38823 * 119.99740 * 207.14067 * 20 19 18 23 23 N 1.31617 * 119.99860 * 7.51903 * 22 20 19 24 24 Si 1.86795 * 119.99749 * 187.52338 * 22 20 19 25 25 H 1.48500 * 109.47033 * 89.99816 * 24 22 20 26 26 H 1.48500 * 109.46809 * 209.99776 * 24 22 20 27 27 H 1.48497 * 109.47260 * 329.99798 * 24 22 20 28 28 C 1.48858 * 122.11998 * 93.88773 * 19 18 17 29 29 C 1.43623 * 119.96878 * 4.92742 * 15 13 11 30 30 H 1.09000 * 109.47684 * 172.77834 * 1 2 3 31 31 H 1.09005 * 109.47101 * 292.78843 * 1 2 3 32 32 H 1.09004 * 109.46706 * 52.78114 * 1 2 3 33 33 H 1.08994 * 109.63584 * 54.56045 * 4 2 1 34 34 H 1.08995 * 109.46163 * 294.42927 * 4 2 1 35 35 H 1.09001 * 109.45802 * 178.48602 * 5 4 2 36 36 H 1.09007 * 109.44752 * 58.52732 * 5 4 2 37 37 H 1.09007 * 109.49302 * 301.41558 * 6 5 4 38 38 H 1.08993 * 109.50121 * 181.31836 * 6 5 4 39 39 H 1.09002 * 109.47154 * 300.71535 * 9 7 6 40 40 H 1.09003 * 109.47205 * 60.70921 * 9 7 6 41 41 H 1.08998 * 109.47297 * 180.71009 * 9 7 6 42 42 H 1.09008 * 109.32212 * 342.19929 * 16 15 13 43 43 H 1.09000 * 109.33084 * 222.73323 * 16 15 13 44 44 H 1.09000 * 109.00782 * 297.69388 * 17 16 15 45 45 H 1.09001 * 108.94468 * 178.86408 * 17 16 15 46 46 H 1.09003 * 109.76369 * 162.04941 * 18 17 16 47 47 H 1.09000 * 109.76213 * 41.27974 * 18 17 16 48 48 H 0.96996 * 119.99633 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.48044 * 80.34665 * 28 19 18 50 50 H 1.08997 * 109.47923 * 200.38027 * 28 19 18 51 51 H 1.08996 * 108.87484 * 31.46654 * 29 15 13 52 52 H 1.08994 * 108.87360 * 149.90948 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0468 -0.7363 1.2454 5 6 3.5711 -0.8499 1.1677 6 6 3.9615 -1.6629 -0.0687 7 6 3.4657 -0.9421 -1.3263 8 1 3.6533 -1.5617 -2.2032 9 6 4.1985 0.3927 -1.4751 10 7 2.0225 -0.6996 -1.1944 11 6 1.1674 -1.1062 -2.1535 12 8 -0.0076 -0.8112 -2.0837 13 6 1.6662 -1.9204 -3.3032 14 8 1.7735 -3.1240 -3.1930 15 7 1.9972 -1.3177 -4.4624 16 6 2.3866 -2.1341 -5.6365 17 6 1.2728 -2.2166 -6.5944 18 6 0.8259 -0.8250 -7.0734 19 7 0.0170 -0.2410 -6.0424 20 6 -1.3241 -0.5164 -6.0165 21 1 -1.6933 -1.4425 -6.4316 22 6 -2.2091 0.3951 -5.4570 23 7 -1.7827 1.5838 -5.0862 24 14 -4.0051 -0.0657 -5.2301 25 1 -4.1913 -0.6892 -3.8953 26 1 -4.8453 1.1548 -5.3280 27 1 -4.4063 -1.0289 -6.2867 28 6 0.5877 0.6595 -5.0035 29 6 1.9716 0.1150 -4.5590 30 1 -0.3634 -1.0195 -0.1292 31 1 -0.3633 0.3981 0.9475 32 1 -0.3633 0.6216 -0.8184 33 1 1.6095 -1.7337 1.2890 34 1 1.7688 -0.1777 2.1390 35 1 3.9441 -1.3481 2.0625 36 1 4.0063 0.1471 1.0990 37 1 3.5060 -2.6516 -0.0127 38 1 5.0459 -1.7633 -0.1107 39 1 4.0136 1.0087 -0.5951 40 1 5.2688 0.2106 -1.5727 41 1 3.8354 0.9095 -2.3633 42 1 2.6528 -3.1380 -5.3055 43 1 3.2482 -1.6775 -6.1237 44 1 0.4296 -2.7152 -6.1164 45 1 1.5900 -2.8037 -7.4563 46 1 0.2431 -0.9202 -7.9896 47 1 1.6998 -0.1995 -7.2549 48 1 -2.4012 2.2207 -4.6956 49 1 0.7031 1.6622 -5.4151 50 1 -0.0824 0.6939 -4.1445 51 1 2.2215 0.5385 -3.5862 52 1 2.7217 0.4330 -5.2831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982998894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:59 Heat of formation + Delta-G solvation = -22.306424 kcal Electronic energy + Delta-G solvation = -33266.561195 eV Core-core repulsion = 29267.661798 eV Total energy + Delta-G solvation = -3998.899397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.00427 -39.22614 -37.50039 -36.92928 -34.27888 -33.53104 -32.86856 -32.55559 -30.78347 -29.23561 -27.64494 -26.61153 -25.85850 -24.39250 -23.67529 -23.36471 -22.11837 -21.15628 -19.76115 -19.72624 -18.01650 -17.38893 -16.45487 -16.41606 -16.11105 -15.69238 -15.18185 -14.79162 -14.71724 -14.24539 -14.02232 -13.96015 -13.73355 -13.56138 -13.26940 -13.14284 -12.95281 -12.87221 -12.51365 -12.37433 -12.24984 -11.97232 -11.86047 -11.73234 -11.62271 -11.40479 -11.08096 -10.95843 -10.85733 -10.81472 -10.73126 -10.55301 -10.50825 -10.37372 -10.22640 -10.07861 -9.77028 -9.64432 -8.61063 -8.51777 -8.37976 -8.16365 -6.59712 -5.68088 -3.13612 2.56204 2.58223 2.97108 3.47351 3.53130 3.55319 3.66204 4.45919 4.53601 4.60728 4.68949 4.77056 4.87402 5.02939 5.17128 5.26807 5.29822 5.34928 5.37373 5.45142 5.54795 5.57110 5.64656 5.71174 5.73518 5.75228 5.77255 5.82803 5.89213 5.90624 5.95359 5.98077 6.06152 6.14497 6.19191 6.30033 6.38741 6.43214 6.49118 6.51553 6.79863 6.84213 6.84759 7.07074 7.39470 7.41760 7.61004 7.80592 7.91294 8.27568 8.32370 8.56392 9.31449 9.97946 10.42237 11.39643 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.005100 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.493286 B = 5488.516058 C = 6681.822964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.146 3.854 3 H 0.074 0.926 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.128 4.128 7 C 0.134 3.866 8 H 0.088 0.912 9 C -0.165 4.165 10 N -0.598 5.598 11 C 0.516 3.484 12 O -0.475 6.475 13 C 0.520 3.480 14 O -0.537 6.537 15 N -0.564 5.564 16 C 0.128 3.872 17 C -0.173 4.173 18 C 0.163 3.837 19 N -0.590 5.590 20 C -0.252 4.252 21 H 0.062 0.938 22 C 0.012 3.988 23 N -0.909 5.909 24 Si 0.901 3.099 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.281 1.281 28 C 0.162 3.838 29 C 0.072 3.928 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.069 0.931 38 H 0.074 0.926 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.046 0.954 47 H 0.033 0.967 48 H 0.252 0.748 49 H 0.039 0.961 50 H 0.094 0.906 51 H 0.062 0.938 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.841 -1.466 9.444 18.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.044 3.956 3 H 0.092 0.908 4 C -0.170 4.170 5 C -0.157 4.157 6 C -0.167 4.167 7 C 0.030 3.970 8 H 0.106 0.894 9 C -0.223 4.223 10 N -0.335 5.335 11 C 0.299 3.701 12 O -0.346 6.346 13 C 0.302 3.698 14 O -0.415 6.415 15 N -0.296 5.296 16 C 0.007 3.993 17 C -0.214 4.214 18 C 0.034 3.966 19 N -0.312 5.312 20 C -0.382 4.382 21 H 0.080 0.920 22 C -0.186 4.186 23 N -0.554 5.554 24 Si 0.732 3.268 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.206 1.206 28 C 0.037 3.963 29 C -0.053 4.053 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.093 0.907 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.085 0.915 44 H 0.087 0.913 45 H 0.076 0.924 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.062 0.938 49 H 0.057 0.943 50 H 0.113 0.887 51 H 0.080 0.920 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 15.128 -1.776 9.570 17.989 hybrid contribution -0.990 -0.218 0.122 1.021 sum 14.139 -1.995 9.692 17.258 Atomic orbital electron populations 1.22240 0.92309 1.04249 1.01249 1.21377 0.95996 0.94963 0.83281 0.90801 1.22105 0.95802 1.01579 0.97525 1.21551 0.95903 1.00561 0.97687 1.21906 1.01040 0.99538 0.94168 1.21276 0.79687 0.97004 0.99035 0.89433 1.22215 1.00235 0.96930 1.02882 1.48244 1.06657 1.58097 1.20546 1.20326 0.86899 0.79587 0.83310 1.90956 1.16132 1.52241 1.75250 1.20229 0.77158 0.88131 0.84249 1.90715 1.53450 1.13887 1.83454 1.47450 1.64118 1.07555 1.10500 1.20665 0.97209 0.95823 0.85590 1.21922 0.99016 1.02361 0.98133 1.20286 0.93921 0.90699 0.91716 1.43622 1.04983 1.55312 1.27240 1.19116 0.82399 1.00147 1.36532 0.92005 1.24980 0.97836 0.94923 1.00891 1.69928 1.33914 1.05376 1.46210 0.86297 0.85166 0.77132 0.78216 1.21320 1.21789 1.20649 1.22130 0.88978 0.91197 0.94023 1.22458 1.02627 0.79337 1.00914 0.91518 0.93731 0.89802 0.91381 0.90802 0.91750 0.91458 0.91188 0.90710 0.91677 0.91304 0.91782 0.90250 0.91535 0.91285 0.92368 0.93530 0.94891 0.93781 0.94269 0.88739 0.91988 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.22 7.62 37.16 0.28 -1.94 16 2 C 0.15 1.89 3.09 -67.37 -0.21 1.68 16 3 H 0.07 0.87 7.48 -51.93 -0.39 0.48 16 4 C -0.13 -1.35 5.40 -26.38 -0.14 -1.49 16 5 C -0.12 -1.02 5.67 -26.69 -0.15 -1.17 16 6 C -0.13 -1.24 5.55 -26.61 -0.15 -1.39 16 7 C 0.13 1.56 3.13 -67.60 -0.21 1.35 16 8 H 0.09 1.16 6.31 -51.93 -0.33 0.83 16 9 C -0.16 -1.54 9.02 37.16 0.34 -1.21 16 10 N -0.60 -8.80 2.67 -157.98 -0.42 -9.22 16 11 C 0.52 10.02 5.48 -11.59 -0.06 9.95 16 12 O -0.47 -10.97 11.96 5.50 0.07 -10.90 16 13 C 0.52 10.45 5.44 -11.59 -0.06 10.39 16 14 O -0.54 -11.82 16.52 5.50 0.09 -11.73 16 15 N -0.56 -10.38 2.46 -176.94 -0.44 -10.82 16 16 C 0.13 2.11 5.72 -5.91 -0.03 2.07 16 17 C -0.17 -3.14 5.64 -29.13 -0.16 -3.30 16 18 C 0.16 3.31 5.63 -5.23 -0.03 3.28 16 19 N -0.59 -14.61 2.54 -171.77 -0.44 -15.04 16 20 C -0.25 -7.10 9.29 -15.06 -0.14 -7.24 16 21 H 0.06 1.76 7.84 -52.49 -0.41 1.35 16 22 C 0.01 0.34 5.11 -17.43 -0.09 0.25 16 23 N -0.91 -26.58 10.61 55.49 0.59 -26.00 16 24 Si 0.90 23.15 29.56 -169.99 -5.02 18.12 16 25 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 28 C 0.16 3.81 5.18 -1.56 -0.01 3.80 16 29 C 0.07 1.30 5.02 -4.39 -0.02 1.27 16 30 H 0.07 1.19 6.81 -51.93 -0.35 0.83 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 1.57 6.68 -51.93 -0.35 1.22 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.07 0.51 6.49 -51.93 -0.34 0.18 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.56 5.71 -51.93 -0.30 0.27 16 40 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.67 6.85 -51.93 -0.36 0.31 16 42 H 0.08 1.31 7.09 -51.92 -0.37 0.94 16 43 H 0.07 0.89 8.06 -51.93 -0.42 0.47 16 44 H 0.07 1.52 7.91 -51.93 -0.41 1.11 16 45 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 46 H 0.05 0.97 8.02 -51.93 -0.42 0.55 16 47 H 0.03 0.61 7.59 -51.93 -0.39 0.21 16 48 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 49 H 0.04 0.97 7.99 -51.93 -0.41 0.56 16 50 H 0.09 2.58 5.72 -51.93 -0.30 2.29 16 51 H 0.06 1.03 5.65 -51.93 -0.29 0.74 16 52 H 0.07 1.03 7.73 -51.93 -0.40 0.63 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -33.25 383.00 -9.41 -42.66 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -8.75 Total: 0.85 kcal Atomic # 6 Polarization: 17.16 SS G_CDS: -0.86 Total: 16.31 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.70 Total: -61.08 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.16 Total: -22.63 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.02 Total: 18.12 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.25 -9.41 -42.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982998894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.354 kcal (2) G-P(sol) polarization free energy of solvation -33.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds