Wall clock time and date at job start Tue Mar 31 2020 21:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.70362 * 2 1 4 4 C 1.53628 * 109.65961 * 120.59245 * 2 1 3 5 5 C 1.53044 * 109.23830 * 174.54483 * 4 2 1 6 6 C 1.53035 * 109.54382 * 298.51222 * 5 4 2 7 7 C 1.53196 * 109.31286 * 61.36407 * 6 5 4 8 8 H 1.08996 * 109.70758 * 185.51529 * 7 6 5 9 9 C 1.52996 * 109.58795 * 65.15281 * 7 6 5 10 10 N 1.46926 * 109.58670 * 239.64221 * 2 1 3 11 11 C 1.34772 * 120.62910 * 6.62915 * 10 2 1 12 12 O 1.21350 * 120.00414 * 5.35443 * 11 10 2 13 13 C 1.49449 * 120.00254 * 185.35266 * 11 10 2 14 14 O 1.21347 * 120.00181 * 84.53161 * 13 11 10 15 15 N 1.34776 * 120.00198 * 264.54186 * 13 11 10 16 16 C 1.48211 * 119.97258 * 184.95294 * 15 13 11 17 17 C 1.47140 * 110.34586 * 102.46235 * 16 15 13 18 18 C 1.53802 * 111.83849 * 58.29889 * 17 16 15 19 19 N 1.43465 * 107.95901 * 281.66799 * 18 17 16 20 20 C 1.36934 * 118.93778 * 273.61047 * 19 18 17 21 21 H 1.07997 * 120.00508 * 27.13262 * 20 19 18 22 22 C 1.38823 * 119.99740 * 207.14067 * 20 19 18 23 23 N 1.31617 * 119.99860 * 7.51903 * 22 20 19 24 24 Si 1.86795 * 119.99749 * 187.52338 * 22 20 19 25 25 H 1.48500 * 109.47033 * 89.99816 * 24 22 20 26 26 H 1.48500 * 109.46809 * 209.99776 * 24 22 20 27 27 H 1.48497 * 109.47260 * 329.99798 * 24 22 20 28 28 C 1.48858 * 122.11998 * 93.88773 * 19 18 17 29 29 C 1.43623 * 119.96878 * 4.92742 * 15 13 11 30 30 H 1.09000 * 109.47684 * 172.77834 * 1 2 3 31 31 H 1.09005 * 109.47101 * 292.78843 * 1 2 3 32 32 H 1.09004 * 109.46706 * 52.78114 * 1 2 3 33 33 H 1.08994 * 109.63584 * 54.56045 * 4 2 1 34 34 H 1.08995 * 109.46163 * 294.42927 * 4 2 1 35 35 H 1.09001 * 109.45802 * 178.48602 * 5 4 2 36 36 H 1.09007 * 109.44752 * 58.52732 * 5 4 2 37 37 H 1.09007 * 109.49302 * 301.41558 * 6 5 4 38 38 H 1.08993 * 109.50121 * 181.31836 * 6 5 4 39 39 H 1.09002 * 109.47154 * 300.71535 * 9 7 6 40 40 H 1.09003 * 109.47205 * 60.70921 * 9 7 6 41 41 H 1.08998 * 109.47297 * 180.71009 * 9 7 6 42 42 H 1.09008 * 109.32212 * 342.19929 * 16 15 13 43 43 H 1.09000 * 109.33084 * 222.73323 * 16 15 13 44 44 H 1.09000 * 109.00782 * 297.69388 * 17 16 15 45 45 H 1.09001 * 108.94468 * 178.86408 * 17 16 15 46 46 H 1.09003 * 109.76369 * 162.04941 * 18 17 16 47 47 H 1.09000 * 109.76213 * 41.27974 * 18 17 16 48 48 H 0.96996 * 119.99633 * 179.97438 * 23 22 20 49 49 H 1.09002 * 109.48044 * 80.34665 * 28 19 18 50 50 H 1.08997 * 109.47923 * 200.38027 * 28 19 18 51 51 H 1.08996 * 108.87484 * 31.46654 * 29 15 13 52 52 H 1.08994 * 108.87360 * 149.90948 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8975 1.0262 0.0000 4 6 2.0468 -0.7363 1.2454 5 6 3.5711 -0.8499 1.1677 6 6 3.9615 -1.6629 -0.0687 7 6 3.4657 -0.9421 -1.3263 8 1 3.6533 -1.5617 -2.2032 9 6 4.1985 0.3927 -1.4751 10 7 2.0225 -0.6996 -1.1944 11 6 1.1674 -1.1062 -2.1535 12 8 -0.0076 -0.8112 -2.0837 13 6 1.6662 -1.9204 -3.3032 14 8 1.7735 -3.1240 -3.1930 15 7 1.9972 -1.3177 -4.4624 16 6 2.3866 -2.1341 -5.6365 17 6 1.2728 -2.2166 -6.5944 18 6 0.8259 -0.8250 -7.0734 19 7 0.0170 -0.2410 -6.0424 20 6 -1.3241 -0.5164 -6.0165 21 1 -1.6933 -1.4425 -6.4316 22 6 -2.2091 0.3951 -5.4570 23 7 -1.7827 1.5838 -5.0862 24 14 -4.0051 -0.0657 -5.2301 25 1 -4.1913 -0.6892 -3.8953 26 1 -4.8453 1.1548 -5.3280 27 1 -4.4063 -1.0289 -6.2867 28 6 0.5877 0.6595 -5.0035 29 6 1.9716 0.1150 -4.5590 30 1 -0.3634 -1.0195 -0.1292 31 1 -0.3633 0.3981 0.9475 32 1 -0.3633 0.6216 -0.8184 33 1 1.6095 -1.7337 1.2890 34 1 1.7688 -0.1777 2.1390 35 1 3.9441 -1.3481 2.0625 36 1 4.0063 0.1471 1.0990 37 1 3.5060 -2.6516 -0.0127 38 1 5.0459 -1.7633 -0.1107 39 1 4.0136 1.0087 -0.5951 40 1 5.2688 0.2106 -1.5727 41 1 3.8354 0.9095 -2.3633 42 1 2.6528 -3.1380 -5.3055 43 1 3.2482 -1.6775 -6.1237 44 1 0.4296 -2.7152 -6.1164 45 1 1.5900 -2.8037 -7.4563 46 1 0.2431 -0.9202 -7.9896 47 1 1.6998 -0.1995 -7.2549 48 1 -2.4012 2.2207 -4.6956 49 1 0.7031 1.6622 -5.4151 50 1 -0.0824 0.6939 -4.1445 51 1 2.2215 0.5385 -3.5862 52 1 2.7217 0.4330 -5.2831 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982998894.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:56 Heat of formation + Delta-G solvation = -43.450845 kcal Electronic energy + Delta-G solvation = -33267.478086 eV Core-core repulsion = 29267.661798 eV Total energy + Delta-G solvation = -3999.816288 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.36366 -40.59053 -38.84621 -38.57415 -36.06925 -34.68240 -34.13877 -33.87506 -32.73192 -30.28379 -29.35847 -27.59741 -27.43330 -25.91907 -25.52240 -24.37922 -23.33100 -22.38464 -21.52312 -20.89443 -19.48569 -18.77006 -18.29137 -17.84513 -17.58454 -17.11806 -16.52695 -16.17244 -15.94108 -15.81801 -15.56293 -15.32675 -15.06139 -14.93094 -14.70999 -14.49586 -14.19422 -14.01118 -13.97725 -13.83624 -13.54939 -13.45836 -13.20342 -12.96271 -12.88763 -12.76375 -12.58644 -12.53358 -12.40338 -12.18383 -12.08493 -12.00753 -11.79763 -11.72980 -11.70880 -11.50845 -11.45002 -11.34594 -10.51883 -10.09698 -9.75640 -9.68249 -8.62571 -7.84907 -5.30813 1.04612 1.21700 1.35087 1.41652 1.45010 1.50539 2.34405 2.48704 3.16305 3.31907 3.63832 3.67657 3.82197 3.88219 3.97450 4.00938 4.14349 4.14732 4.25802 4.26761 4.36476 4.42769 4.47035 4.53503 4.59153 4.64913 4.67966 4.75393 4.79809 4.88561 4.92224 4.99342 5.01517 5.03597 5.04983 5.14468 5.20278 5.21462 5.26513 5.28029 5.32338 5.43086 5.54315 5.59269 5.61711 5.68988 5.79618 6.13472 6.19369 6.42172 6.78380 6.88364 7.19493 7.96599 8.33471 9.18469 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012933 B = 0.005100 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2164.493286 B = 5488.516058 C = 6681.822964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.141 3.859 3 H 0.097 0.903 4 C -0.126 4.126 5 C -0.114 4.114 6 C -0.125 4.125 7 C 0.124 3.876 8 H 0.071 0.929 9 C -0.158 4.158 10 N -0.585 5.585 11 C 0.508 3.492 12 O -0.529 6.529 13 C 0.514 3.486 14 O -0.565 6.565 15 N -0.561 5.561 16 C 0.123 3.877 17 C -0.159 4.159 18 C 0.157 3.843 19 N -0.605 5.605 20 C -0.257 4.257 21 H 0.050 0.950 22 C -0.037 4.037 23 N -0.927 5.927 24 Si 0.948 3.052 25 H -0.303 1.303 26 H -0.285 1.285 27 H -0.270 1.270 28 C 0.169 3.831 29 C 0.087 3.913 30 H 0.033 0.967 31 H 0.071 0.929 32 H 0.043 0.957 33 H 0.048 0.952 34 H 0.098 0.902 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.047 0.953 38 H 0.104 0.896 39 H 0.077 0.923 40 H 0.097 0.903 41 H 0.051 0.949 42 H 0.080 0.920 43 H 0.114 0.886 44 H 0.020 0.980 45 H 0.096 0.904 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.246 0.754 49 H 0.021 0.979 50 H 0.049 0.951 51 H 0.075 0.925 52 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.635 -1.067 10.075 22.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.164 4.164 5 C -0.151 4.151 6 C -0.163 4.163 7 C 0.021 3.979 8 H 0.090 0.910 9 C -0.216 4.216 10 N -0.321 5.321 11 C 0.291 3.709 12 O -0.405 6.405 13 C 0.297 3.703 14 O -0.445 6.445 15 N -0.292 5.292 16 C 0.003 3.997 17 C -0.200 4.200 18 C 0.030 3.970 19 N -0.328 5.328 20 C -0.387 4.387 21 H 0.068 0.932 22 C -0.233 4.233 23 N -0.573 5.573 24 Si 0.778 3.222 25 H -0.231 1.231 26 H -0.211 1.211 27 H -0.195 1.195 28 C 0.044 3.956 29 C -0.039 4.039 30 H 0.052 0.948 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.067 0.933 34 H 0.117 0.883 35 H 0.103 0.897 36 H 0.106 0.894 37 H 0.066 0.934 38 H 0.122 0.878 39 H 0.096 0.904 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.099 0.901 43 H 0.132 0.868 44 H 0.039 0.961 45 H 0.114 0.886 46 H 0.057 0.943 47 H 0.083 0.917 48 H 0.055 0.945 49 H 0.039 0.961 50 H 0.067 0.933 51 H 0.093 0.907 52 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 18.997 -1.382 10.186 21.600 hybrid contribution -2.138 -0.393 -0.087 2.176 sum 16.859 -1.775 10.099 19.733 Atomic orbital electron populations 1.22040 0.94747 1.01455 1.00939 1.21614 0.94110 0.96484 0.83848 0.88566 1.22083 0.97364 1.00382 0.96599 1.21564 0.94070 1.01671 0.97780 1.21918 1.02566 0.98255 0.93568 1.21630 0.77717 0.98775 0.99746 0.91035 1.22195 1.01399 0.95055 1.02920 1.48405 1.07743 1.56285 1.19635 1.20410 0.86713 0.79713 0.84076 1.90956 1.18283 1.54679 1.76537 1.20512 0.76737 0.87935 0.85122 1.90679 1.54804 1.14924 1.84081 1.47590 1.63174 1.07826 1.10604 1.20920 0.97901 0.96372 0.84529 1.21737 0.97947 1.00728 0.99575 1.20502 0.94281 0.91965 0.90266 1.43836 1.04399 1.55622 1.28904 1.19272 0.84473 0.99386 1.35610 0.93203 1.25544 1.00753 0.95289 1.01695 1.70069 1.34285 1.05861 1.47103 0.85552 0.82201 0.77103 0.77325 1.23065 1.21108 1.19476 1.21830 0.91040 0.90734 0.92031 1.22234 0.99900 0.79084 1.02632 0.94762 0.90998 0.93787 0.93310 0.88350 0.89730 0.89434 0.93410 0.87762 0.90430 0.88475 0.92954 0.90136 0.86758 0.96082 0.88567 0.94344 0.91737 0.94469 0.96076 0.93265 0.90715 0.87592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.40 7.62 71.98 0.55 -3.85 16 2 C 0.14 3.55 3.09 45.12 0.14 3.69 16 3 H 0.10 2.04 7.48 -2.39 -0.02 2.02 16 4 C -0.13 -2.31 5.40 30.82 0.17 -2.14 16 5 C -0.11 -1.49 5.67 30.62 0.17 -1.31 16 6 C -0.13 -2.05 5.55 30.67 0.17 -1.88 16 7 C 0.12 2.64 3.13 44.97 0.14 2.78 16 8 H 0.07 1.78 6.31 -2.39 -0.02 1.77 16 9 C -0.16 -2.37 9.02 71.98 0.65 -1.72 16 10 N -0.59 -17.17 2.67 -772.08 -2.06 -19.23 16 11 C 0.51 20.60 5.48 87.27 0.48 21.08 16 12 O -0.53 -26.43 11.96 -3.25 -0.04 -26.47 16 13 C 0.51 21.08 5.44 87.27 0.47 21.56 16 14 O -0.56 -25.52 16.52 -3.24 -0.05 -25.57 16 15 N -0.56 -20.15 2.46 -832.08 -2.05 -22.20 16 16 C 0.12 3.72 5.72 84.23 0.48 4.20 16 17 C -0.16 -5.53 5.64 29.04 0.16 -5.36 16 18 C 0.16 6.18 5.63 87.21 0.49 6.67 16 19 N -0.61 -30.45 2.54 -697.36 -1.77 -32.22 16 20 C -0.26 -14.98 9.29 84.04 0.78 -14.20 16 21 H 0.05 2.96 7.84 -2.91 -0.02 2.94 16 22 C -0.04 -2.22 5.11 84.86 0.43 -1.78 16 23 N -0.93 -56.54 10.61 21.65 0.23 -56.31 16 24 Si 0.95 49.52 29.56 68.60 2.03 51.54 16 25 H -0.30 -16.48 7.11 99.48 0.71 -15.77 16 26 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 27 H -0.27 -13.43 7.11 99.48 0.71 -12.73 16 28 C 0.17 8.12 5.18 86.68 0.45 8.56 16 29 C 0.09 3.01 5.02 87.67 0.44 3.45 16 30 H 0.03 1.31 6.81 -2.39 -0.02 1.30 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.04 1.78 6.68 -2.39 -0.02 1.76 16 33 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.86 6.49 -2.38 -0.02 0.85 16 37 H 0.05 1.01 8.14 -2.38 -0.02 0.99 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.08 0.99 5.71 -2.39 -0.01 0.97 16 40 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.05 0.93 6.85 -2.39 -0.02 0.91 16 42 H 0.08 2.48 7.09 -2.38 -0.02 2.47 16 43 H 0.11 2.46 8.06 -2.39 -0.02 2.44 16 44 H 0.02 0.92 7.91 -2.39 -0.02 0.90 16 45 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 46 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 47 H 0.06 2.15 7.59 -2.39 -0.02 2.13 16 48 H 0.25 14.75 8.31 -92.71 -0.77 13.97 16 49 H 0.02 1.07 7.99 -2.39 -0.02 1.06 16 50 H 0.05 2.83 5.72 -2.39 -0.01 2.82 16 51 H 0.07 2.42 5.65 -2.39 -0.01 2.41 16 52 H 0.11 2.88 7.73 -2.39 -0.02 2.86 16 Total: -1.00 -80.46 383.00 3.38 -77.08 By element: Atomic # 1 Polarization: 12.73 SS G_CDS: 0.90 Total: 13.63 kcal Atomic # 6 Polarization: 33.55 SS G_CDS: 6.18 Total: 39.74 kcal Atomic # 7 Polarization: -124.31 SS G_CDS: -5.64 Total: -129.95 kcal Atomic # 8 Polarization: -51.95 SS G_CDS: -0.09 Total: -52.04 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 2.03 Total: 51.54 kcal Total: -80.46 3.38 -77.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982998894.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.632 kcal (2) G-P(sol) polarization free energy of solvation -80.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.377 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds