Wall clock time and date at job start Tue Mar 31 2020 21:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.58367 * 2 1 4 4 C 1.53185 * 109.58733 * 239.71102 * 2 1 3 5 5 C 1.53042 * 109.31405 * 185.43703 * 4 2 1 6 6 C 1.53037 * 109.52702 * 61.37035 * 5 4 2 7 7 C 1.53192 * 109.31300 * 298.61630 * 6 5 4 8 8 H 1.08999 * 109.58379 * 174.43122 * 7 6 5 9 9 C 1.52997 * 109.71733 * 294.79792 * 7 6 5 10 10 N 1.46925 * 108.76695 * 54.65492 * 7 6 5 11 11 C 1.34784 * 120.63127 * 126.35815 * 10 7 6 12 12 O 1.21346 * 119.99718 * 184.73379 * 11 10 7 13 13 C 1.49449 * 119.99778 * 4.73389 * 11 10 7 14 14 O 1.21347 * 119.99751 * 85.73071 * 13 11 10 15 15 N 1.34779 * 119.99940 * 265.72523 * 13 11 10 16 16 C 1.48213 * 119.96659 * 175.23480 * 15 13 11 17 17 C 1.47726 * 110.06330 * 102.59926 * 16 15 13 18 18 C 1.53794 * 111.83587 * 58.36779 * 17 16 15 19 19 N 1.43471 * 107.95691 * 281.59822 * 18 17 16 20 20 C 1.36933 * 118.93954 * 273.62915 * 19 18 17 21 21 H 1.07998 * 119.99947 * 31.53390 * 20 19 18 22 22 C 1.38811 * 120.00118 * 211.52981 * 20 19 18 23 23 N 1.31622 * 119.99963 * 7.77613 * 22 20 19 24 24 Si 1.86803 * 119.99913 * 187.77318 * 22 20 19 25 25 H 1.48502 * 109.46878 * 90.00478 * 24 22 20 26 26 H 1.48501 * 109.46989 * 210.00155 * 24 22 20 27 27 H 1.48497 * 109.47153 * 330.00179 * 24 22 20 28 28 C 1.48858 * 122.11861 * 93.65821 * 19 18 17 29 29 C 1.43614 * 119.97053 * 355.52037 * 15 13 11 30 30 H 1.08993 * 109.47300 * 184.28040 * 1 2 3 31 31 H 1.09000 * 109.46915 * 304.28002 * 1 2 3 32 32 H 1.08994 * 109.47062 * 64.27646 * 1 2 3 33 33 H 1.09001 * 109.49844 * 65.48444 * 4 2 1 34 34 H 1.08997 * 109.52420 * 305.40570 * 4 2 1 35 35 H 1.08998 * 109.46223 * 181.38879 * 5 4 2 36 36 H 1.09001 * 109.45882 * 301.35997 * 5 4 2 37 37 H 1.09008 * 109.49408 * 58.58064 * 6 5 4 38 38 H 1.09001 * 109.49985 * 178.67736 * 6 5 4 39 39 H 1.08999 * 109.47169 * 179.35960 * 9 7 6 40 40 H 1.09000 * 109.46522 * 299.35494 * 9 7 6 41 41 H 1.08993 * 109.47153 * 59.35602 * 9 7 6 42 42 H 1.08993 * 109.32986 * 222.78679 * 16 15 13 43 43 H 1.08999 * 109.32726 * 342.25533 * 16 15 13 44 44 H 1.09004 * 109.06149 * 297.72191 * 17 16 15 45 45 H 1.08997 * 108.89159 * 178.89480 * 17 16 15 46 46 H 1.08998 * 109.76476 * 161.98436 * 18 17 16 47 47 H 1.08994 * 109.80621 * 41.23987 * 18 17 16 48 48 H 0.96990 * 120.00120 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.47871 * 200.61394 * 28 19 18 50 50 H 1.08992 * 109.48021 * 80.57735 * 28 19 18 51 51 H 1.08994 * 108.87650 * 31.41493 * 29 15 13 52 52 H 1.08998 * 108.87604 * 149.95865 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5679 -0.8435 -1.1728 6 6 3.9601 -1.6610 0.0601 7 6 3.4685 -0.9435 1.3212 8 1 3.6575 -1.5682 2.1941 9 6 4.2029 0.3898 1.4759 10 7 2.0254 -0.6989 1.1937 11 6 1.1721 -1.1084 2.1533 12 8 -0.0242 -0.9777 1.9974 13 6 1.6993 -1.7234 3.4092 14 8 2.0321 -1.0164 4.3377 15 7 1.8052 -3.0632 3.5106 16 6 2.4256 -3.6679 4.7132 17 6 1.3794 -4.2011 5.6095 18 6 0.5055 -5.2533 4.9063 19 7 -0.4345 -4.5616 4.0719 20 6 -1.6168 -4.1369 4.6167 21 1 -1.6588 -3.8455 5.6558 22 6 -2.7614 -4.0807 3.8334 23 7 -2.7498 -4.5774 2.6145 24 14 -4.3183 -3.3004 4.5092 25 1 -4.3261 -1.8510 4.1857 26 1 -5.5043 -3.9507 3.8962 27 1 -4.3621 -3.4790 5.9827 28 6 -0.1662 -4.2912 2.6329 29 6 1.3222 -3.9033 2.4507 30 1 -0.3633 -1.0247 0.0767 31 1 -0.3633 0.5788 0.8492 32 1 -0.3633 0.4460 -0.9258 33 1 1.7639 -0.1656 -2.1371 34 1 1.6050 -1.7246 -1.2925 35 1 3.9381 -1.3392 -2.0701 36 1 4.0046 0.1527 -1.1018 37 1 3.5031 -2.6490 0.0019 38 1 5.0446 -1.7629 0.0991 39 1 3.8421 0.9020 2.3678 40 1 5.2732 0.2061 1.5703 41 1 4.0167 1.0109 0.5998 42 1 3.0885 -4.4776 4.4086 43 1 3.0050 -2.9098 5.2401 44 1 0.7457 -3.3801 5.9450 45 1 1.8566 -4.6580 6.4764 46 1 -0.0278 -5.8459 5.6496 47 1 1.1310 -5.9044 4.2956 48 1 -3.5497 -4.5386 2.0674 49 1 -0.7995 -3.4719 2.2927 50 1 -0.3829 -5.1853 2.0485 51 1 1.4357 -3.3762 1.5034 52 1 1.9212 -4.8134 2.4213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000982998902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:13 Heat of formation + Delta-G solvation = -24.461975 kcal Electronic energy + Delta-G solvation = -33179.722117 eV Core-core repulsion = 29180.729248 eV Total energy + Delta-G solvation = -3998.992869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.04755 -39.25391 -37.55097 -36.92030 -34.27289 -33.54827 -32.90080 -32.57573 -30.82842 -29.24410 -27.67451 -26.63115 -25.87991 -24.41663 -23.65501 -23.41243 -22.14157 -21.21240 -19.85627 -19.75004 -18.04867 -17.26490 -16.55626 -16.36061 -16.19687 -15.54979 -15.22783 -14.92855 -14.76019 -14.32303 -14.13876 -13.96029 -13.71876 -13.59495 -13.26314 -13.07254 -12.93247 -12.87007 -12.61333 -12.42329 -12.23736 -11.94301 -11.88118 -11.83561 -11.70658 -11.40037 -11.09659 -11.03609 -10.89219 -10.79320 -10.73014 -10.58905 -10.53382 -10.39084 -10.23406 -10.12558 -9.78928 -9.62216 -8.65545 -8.56336 -8.40338 -8.17416 -6.53825 -5.70236 -3.19461 2.49695 2.54267 2.94752 3.46379 3.52438 3.54170 3.63056 4.41948 4.49717 4.59290 4.66246 4.74263 4.84371 5.00680 5.13934 5.25083 5.29273 5.31651 5.35017 5.43116 5.50692 5.55251 5.63823 5.69333 5.72407 5.73212 5.74054 5.80318 5.86236 5.89417 5.92951 6.00722 6.02199 6.14047 6.16853 6.27729 6.35192 6.43043 6.44281 6.50755 6.79074 6.80722 6.85720 7.08393 7.33717 7.39955 7.55839 7.77288 7.91114 8.20680 8.30848 8.57930 9.30612 9.96124 10.43343 11.37882 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004907 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.870838 B = 5705.137114 C = 6712.476367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.146 3.854 3 H 0.070 0.930 4 C -0.132 4.132 5 C -0.120 4.120 6 C -0.128 4.128 7 C 0.134 3.866 8 H 0.087 0.913 9 C -0.163 4.163 10 N -0.597 5.597 11 C 0.517 3.483 12 O -0.481 6.481 13 C 0.519 3.481 14 O -0.533 6.533 15 N -0.567 5.567 16 C 0.129 3.871 17 C -0.172 4.172 18 C 0.163 3.837 19 N -0.588 5.588 20 C -0.256 4.256 21 H 0.060 0.940 22 C 0.014 3.986 23 N -0.906 5.906 24 Si 0.900 3.100 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.280 1.280 28 C 0.165 3.835 29 C 0.077 3.923 30 H 0.078 0.922 31 H 0.071 0.929 32 H 0.044 0.956 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.075 0.925 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.062 0.938 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.057 0.943 46 H 0.047 0.953 47 H 0.032 0.968 48 H 0.253 0.747 49 H 0.082 0.918 50 H 0.042 0.958 51 H 0.060 0.940 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.091 5.039 -8.291 19.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.043 3.957 3 H 0.088 0.912 4 C -0.170 4.170 5 C -0.157 4.157 6 C -0.166 4.166 7 C 0.031 3.969 8 H 0.105 0.895 9 C -0.221 4.221 10 N -0.334 5.334 11 C 0.299 3.701 12 O -0.353 6.353 13 C 0.302 3.698 14 O -0.410 6.410 15 N -0.299 5.299 16 C 0.008 3.992 17 C -0.213 4.213 18 C 0.034 3.966 19 N -0.310 5.310 20 C -0.386 4.386 21 H 0.078 0.922 22 C -0.185 4.185 23 N -0.550 5.550 24 Si 0.730 3.270 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.205 1.205 28 C 0.039 3.961 29 C -0.049 4.049 30 H 0.097 0.903 31 H 0.090 0.910 32 H 0.063 0.937 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.085 0.915 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.050 0.950 48 H 0.063 0.937 49 H 0.101 0.899 50 H 0.060 0.940 51 H 0.079 0.921 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 16.440 5.434 -8.006 19.076 hybrid contribution -0.898 0.412 0.322 1.039 sum 15.542 5.846 -7.684 18.297 Atomic orbital electron populations 1.22256 0.92181 1.04698 1.00800 1.21297 0.96042 0.94853 0.83483 0.91204 1.22025 0.95742 1.01885 0.97354 1.21549 0.95929 1.00505 0.97745 1.21925 1.01151 0.99465 0.94100 1.21277 0.79610 0.97191 0.98851 0.89478 1.22159 1.00197 0.97015 1.02732 1.48223 1.06843 1.58412 1.19921 1.20367 0.86980 0.79338 0.83366 1.90943 1.14509 1.53512 1.76337 1.20207 0.77914 0.83191 0.88516 1.90723 1.49405 1.61466 1.39377 1.47467 1.57463 1.04524 1.20460 1.20792 0.95208 0.97242 0.85942 1.22015 0.98760 1.02298 0.98267 1.20288 0.91189 0.91631 0.93453 1.43560 1.17101 1.64090 1.06226 1.19069 0.85541 1.38115 0.95877 0.92210 1.25103 0.97510 0.99039 0.96813 1.69929 1.28193 1.47830 1.09077 0.86322 0.83046 0.79240 0.78346 1.21292 1.21729 1.20521 1.21940 0.88307 1.00376 0.85431 1.22324 1.00430 0.93860 0.88245 0.90318 0.90979 0.93750 0.90736 0.91020 0.91601 0.91570 0.91109 0.90599 0.91800 0.91393 0.91868 0.91498 0.90391 0.91207 0.92476 0.93450 0.94952 0.93717 0.89939 0.93981 0.92148 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.12 7.60 37.16 0.28 -1.83 16 2 C 0.15 1.80 3.07 -67.60 -0.21 1.60 16 3 H 0.07 0.78 7.50 -51.93 -0.39 0.39 16 4 C -0.13 -1.29 5.37 -26.61 -0.14 -1.43 16 5 C -0.12 -0.96 5.68 -26.69 -0.15 -1.11 16 6 C -0.13 -1.13 5.56 -26.61 -0.15 -1.28 16 7 C 0.13 1.52 3.09 -67.60 -0.21 1.31 16 8 H 0.09 1.10 6.37 -51.93 -0.33 0.77 16 9 C -0.16 -1.58 9.03 37.16 0.34 -1.24 16 10 N -0.60 -8.50 2.68 -158.23 -0.42 -8.93 16 11 C 0.52 9.79 5.49 -11.58 -0.06 9.72 16 12 O -0.48 -10.80 12.13 5.50 0.07 -10.74 16 13 C 0.52 10.35 5.46 -11.58 -0.06 10.29 16 14 O -0.53 -11.75 16.57 5.50 0.09 -11.66 16 15 N -0.57 -10.34 2.45 -176.86 -0.43 -10.77 16 16 C 0.13 2.09 5.71 -5.65 -0.03 2.06 16 17 C -0.17 -3.12 5.66 -28.87 -0.16 -3.29 16 18 C 0.16 3.33 5.63 -5.23 -0.03 3.30 16 19 N -0.59 -14.63 2.52 -172.00 -0.43 -15.06 16 20 C -0.26 -7.24 9.22 -15.06 -0.14 -7.38 16 21 H 0.06 1.72 7.84 -52.49 -0.41 1.30 16 22 C 0.01 0.41 5.08 -17.43 -0.09 0.32 16 23 N -0.91 -26.67 10.96 55.49 0.61 -26.06 16 24 Si 0.90 23.10 29.56 -169.99 -5.03 18.08 16 25 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 26 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 27 H -0.28 -7.02 7.11 56.52 0.40 -6.61 16 28 C 0.17 3.89 5.15 -1.74 -0.01 3.88 16 29 C 0.08 1.38 5.13 -4.58 -0.02 1.36 16 30 H 0.08 1.39 6.72 -51.93 -0.35 1.04 16 31 H 0.07 1.24 6.79 -51.93 -0.35 0.89 16 32 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.48 6.50 -51.93 -0.34 0.14 16 37 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.06 0.55 5.74 -51.93 -0.30 0.25 16 42 H 0.07 0.88 8.05 -51.93 -0.42 0.46 16 43 H 0.08 1.25 7.18 -51.93 -0.37 0.88 16 44 H 0.07 1.54 7.91 -51.93 -0.41 1.13 16 45 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 46 H 0.05 0.99 8.02 -51.93 -0.42 0.58 16 47 H 0.03 0.60 7.59 -51.93 -0.39 0.20 16 48 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 49 H 0.08 2.28 6.41 -51.93 -0.33 1.94 16 50 H 0.04 1.05 7.93 -51.93 -0.41 0.64 16 51 H 0.06 1.02 6.74 -51.93 -0.35 0.67 16 52 H 0.07 1.03 7.72 -51.93 -0.40 0.63 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -33.47 386.71 -9.49 -42.96 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -8.92 Total: 0.06 kcal Atomic # 6 Polarization: 17.14 SS G_CDS: -0.85 Total: 16.29 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.68 Total: -60.82 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: 0.16 Total: -22.40 kcal Atomic # 14 Polarization: 23.10 SS G_CDS: -5.03 Total: 18.08 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.47 -9.49 -42.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982998902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.495 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.971 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds