Wall clock time and date at job start Tue Mar 31 2020 21:04:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09005 * 109.58367 * 2 1 4 4 C 1.53185 * 109.58733 * 239.71102 * 2 1 3 5 5 C 1.53042 * 109.31405 * 185.43703 * 4 2 1 6 6 C 1.53037 * 109.52702 * 61.37035 * 5 4 2 7 7 C 1.53192 * 109.31300 * 298.61630 * 6 5 4 8 8 H 1.08999 * 109.58379 * 174.43122 * 7 6 5 9 9 C 1.52997 * 109.71733 * 294.79792 * 7 6 5 10 10 N 1.46925 * 108.76695 * 54.65492 * 7 6 5 11 11 C 1.34784 * 120.63127 * 126.35815 * 10 7 6 12 12 O 1.21346 * 119.99718 * 184.73379 * 11 10 7 13 13 C 1.49449 * 119.99778 * 4.73389 * 11 10 7 14 14 O 1.21347 * 119.99751 * 85.73071 * 13 11 10 15 15 N 1.34779 * 119.99940 * 265.72523 * 13 11 10 16 16 C 1.48213 * 119.96659 * 175.23480 * 15 13 11 17 17 C 1.47726 * 110.06330 * 102.59926 * 16 15 13 18 18 C 1.53794 * 111.83587 * 58.36779 * 17 16 15 19 19 N 1.43471 * 107.95691 * 281.59822 * 18 17 16 20 20 C 1.36933 * 118.93954 * 273.62915 * 19 18 17 21 21 H 1.07998 * 119.99947 * 31.53390 * 20 19 18 22 22 C 1.38811 * 120.00118 * 211.52981 * 20 19 18 23 23 N 1.31622 * 119.99963 * 7.77613 * 22 20 19 24 24 Si 1.86803 * 119.99913 * 187.77318 * 22 20 19 25 25 H 1.48502 * 109.46878 * 90.00478 * 24 22 20 26 26 H 1.48501 * 109.46989 * 210.00155 * 24 22 20 27 27 H 1.48497 * 109.47153 * 330.00179 * 24 22 20 28 28 C 1.48858 * 122.11861 * 93.65821 * 19 18 17 29 29 C 1.43614 * 119.97053 * 355.52037 * 15 13 11 30 30 H 1.08993 * 109.47300 * 184.28040 * 1 2 3 31 31 H 1.09000 * 109.46915 * 304.28002 * 1 2 3 32 32 H 1.08994 * 109.47062 * 64.27646 * 1 2 3 33 33 H 1.09001 * 109.49844 * 65.48444 * 4 2 1 34 34 H 1.08997 * 109.52420 * 305.40570 * 4 2 1 35 35 H 1.08998 * 109.46223 * 181.38879 * 5 4 2 36 36 H 1.09001 * 109.45882 * 301.35997 * 5 4 2 37 37 H 1.09008 * 109.49408 * 58.58064 * 6 5 4 38 38 H 1.09001 * 109.49985 * 178.67736 * 6 5 4 39 39 H 1.08999 * 109.47169 * 179.35960 * 9 7 6 40 40 H 1.09000 * 109.46522 * 299.35494 * 9 7 6 41 41 H 1.08993 * 109.47153 * 59.35602 * 9 7 6 42 42 H 1.08993 * 109.32986 * 222.78679 * 16 15 13 43 43 H 1.08999 * 109.32726 * 342.25533 * 16 15 13 44 44 H 1.09004 * 109.06149 * 297.72191 * 17 16 15 45 45 H 1.08997 * 108.89159 * 178.89480 * 17 16 15 46 46 H 1.08998 * 109.76476 * 161.98436 * 18 17 16 47 47 H 1.08994 * 109.80621 * 41.23987 * 18 17 16 48 48 H 0.96990 * 120.00120 * 179.97438 * 23 22 20 49 49 H 1.08998 * 109.47871 * 200.61394 * 28 19 18 50 50 H 1.08992 * 109.48021 * 80.57735 * 28 19 18 51 51 H 1.08994 * 108.87650 * 31.41493 * 29 15 13 52 52 H 1.08998 * 108.87604 * 149.95865 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0436 -0.7279 -1.2462 5 6 3.5679 -0.8435 -1.1728 6 6 3.9601 -1.6610 0.0601 7 6 3.4685 -0.9435 1.3212 8 1 3.6575 -1.5682 2.1941 9 6 4.2029 0.3898 1.4759 10 7 2.0254 -0.6989 1.1937 11 6 1.1721 -1.1084 2.1533 12 8 -0.0242 -0.9777 1.9974 13 6 1.6993 -1.7234 3.4092 14 8 2.0321 -1.0164 4.3377 15 7 1.8052 -3.0632 3.5106 16 6 2.4256 -3.6679 4.7132 17 6 1.3794 -4.2011 5.6095 18 6 0.5055 -5.2533 4.9063 19 7 -0.4345 -4.5616 4.0719 20 6 -1.6168 -4.1369 4.6167 21 1 -1.6588 -3.8455 5.6558 22 6 -2.7614 -4.0807 3.8334 23 7 -2.7498 -4.5774 2.6145 24 14 -4.3183 -3.3004 4.5092 25 1 -4.3261 -1.8510 4.1857 26 1 -5.5043 -3.9507 3.8962 27 1 -4.3621 -3.4790 5.9827 28 6 -0.1662 -4.2912 2.6329 29 6 1.3222 -3.9033 2.4507 30 1 -0.3633 -1.0247 0.0767 31 1 -0.3633 0.5788 0.8492 32 1 -0.3633 0.4460 -0.9258 33 1 1.7639 -0.1656 -2.1371 34 1 1.6050 -1.7246 -1.2925 35 1 3.9381 -1.3392 -2.0701 36 1 4.0046 0.1527 -1.1018 37 1 3.5031 -2.6490 0.0019 38 1 5.0446 -1.7629 0.0991 39 1 3.8421 0.9020 2.3678 40 1 5.2732 0.2061 1.5703 41 1 4.0167 1.0109 0.5998 42 1 3.0885 -4.4776 4.4086 43 1 3.0050 -2.9098 5.2401 44 1 0.7457 -3.3801 5.9450 45 1 1.8566 -4.6580 6.4764 46 1 -0.0278 -5.8459 5.6496 47 1 1.1310 -5.9044 4.2956 48 1 -3.5497 -4.5386 2.0674 49 1 -0.7995 -3.4719 2.2927 50 1 -0.3829 -5.1853 2.0485 51 1 1.4357 -3.3762 1.5034 52 1 1.9212 -4.8134 2.4213 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000982998902.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:11 Heat of formation + Delta-G solvation = -45.748266 kcal Electronic energy + Delta-G solvation = -33180.645160 eV Core-core repulsion = 29180.729248 eV Total energy + Delta-G solvation = -3999.915912 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -42.37866 -40.60458 -38.85944 -38.56748 -36.07104 -34.62776 -34.16222 -33.89246 -32.79195 -30.27026 -29.39744 -27.58151 -27.45059 -25.91227 -25.53539 -24.39952 -23.32284 -22.42613 -21.53784 -20.95727 -19.51376 -18.65990 -18.17558 -17.97890 -17.61692 -17.00035 -16.50831 -16.26591 -15.97484 -15.85903 -15.60884 -15.47641 -15.05598 -14.78263 -14.65637 -14.53804 -14.16534 -14.02193 -13.92561 -13.82439 -13.61984 -13.52953 -13.20129 -12.97996 -12.89256 -12.83681 -12.61364 -12.53862 -12.43400 -12.17985 -12.07497 -12.04627 -11.77030 -11.74345 -11.70919 -11.49211 -11.43600 -11.33592 -10.57009 -10.10504 -9.75845 -9.69933 -8.58974 -7.88036 -5.38582 1.04662 1.16188 1.34594 1.40381 1.44899 1.49449 2.33551 2.46744 3.14334 3.28452 3.63765 3.66518 3.83207 3.89496 3.97826 4.00698 4.14519 4.14972 4.24893 4.27169 4.37798 4.41885 4.47408 4.53184 4.60631 4.62714 4.68710 4.75283 4.79622 4.88247 4.91388 4.99542 5.02378 5.04995 5.07008 5.13814 5.20425 5.21184 5.24881 5.28669 5.32860 5.43633 5.54447 5.57764 5.62228 5.67619 5.71392 6.10920 6.18153 6.41367 6.77999 6.84694 7.17564 7.93556 8.32954 9.15588 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013094 B = 0.004907 C = 0.004170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2137.870838 B = 5705.137114 C = 6712.476367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.126 4.126 5 C -0.115 4.115 6 C -0.123 4.123 7 C 0.124 3.876 8 H 0.074 0.926 9 C -0.157 4.157 10 N -0.583 5.583 11 C 0.509 3.491 12 O -0.533 6.533 13 C 0.513 3.487 14 O -0.562 6.562 15 N -0.564 5.564 16 C 0.124 3.876 17 C -0.158 4.158 18 C 0.157 3.843 19 N -0.604 5.604 20 C -0.261 4.261 21 H 0.048 0.952 22 C -0.036 4.036 23 N -0.926 5.926 24 Si 0.950 3.050 25 H -0.300 1.300 26 H -0.284 1.284 27 H -0.269 1.269 28 C 0.175 3.825 29 C 0.093 3.907 30 H 0.042 0.958 31 H 0.038 0.962 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.061 0.939 38 H 0.105 0.895 39 H 0.036 0.964 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.116 0.884 43 H 0.081 0.919 44 H 0.021 0.979 45 H 0.095 0.905 46 H 0.038 0.962 47 H 0.064 0.936 48 H 0.248 0.752 49 H 0.032 0.968 50 H 0.024 0.976 51 H 0.070 0.930 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.852 4.671 -9.580 23.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.152 4.152 6 C -0.160 4.160 7 C 0.022 3.978 8 H 0.092 0.908 9 C -0.215 4.215 10 N -0.318 5.318 11 C 0.292 3.708 12 O -0.410 6.410 13 C 0.296 3.704 14 O -0.442 6.442 15 N -0.295 5.295 16 C 0.004 3.996 17 C -0.199 4.199 18 C 0.030 3.970 19 N -0.326 5.326 20 C -0.392 4.392 21 H 0.065 0.935 22 C -0.232 4.232 23 N -0.572 5.572 24 Si 0.779 3.221 25 H -0.228 1.228 26 H -0.210 1.210 27 H -0.193 1.193 28 C 0.049 3.951 29 C -0.033 4.033 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.089 0.911 33 H 0.115 0.885 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.080 0.920 38 H 0.123 0.877 39 H 0.056 0.944 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.134 0.866 43 H 0.100 0.900 44 H 0.040 0.960 45 H 0.113 0.887 46 H 0.056 0.944 47 H 0.082 0.918 48 H 0.057 0.943 49 H 0.051 0.949 50 H 0.042 0.958 51 H 0.088 0.912 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 20.278 5.042 -9.296 22.870 hybrid contribution -2.023 0.543 0.758 2.227 sum 18.255 5.584 -8.538 20.913 Atomic orbital electron populations 1.22065 0.94536 1.01970 1.00588 1.21537 0.94215 0.96319 0.84018 0.89079 1.22001 0.97360 1.00782 0.96265 1.21566 0.94014 1.01522 0.98111 1.21936 1.02734 0.98645 0.92730 1.21638 0.77608 0.98503 1.00081 0.90824 1.22133 1.01421 0.95790 1.02158 1.48382 1.07884 1.56562 1.19012 1.20409 0.86793 0.79620 0.83997 1.90946 1.16572 1.55988 1.77451 1.20542 0.77399 0.83805 0.88634 1.90687 1.50922 1.62203 1.40357 1.47604 1.56689 1.04038 1.21149 1.21058 0.94938 0.98639 0.84955 1.21821 0.98277 0.99978 0.99831 1.20504 0.90943 0.92312 0.93212 1.43781 1.17039 1.64856 1.06948 1.19227 0.87130 1.37378 0.95467 0.93455 1.25696 0.99942 1.00257 0.97330 1.70059 1.28289 1.49111 1.09741 0.85540 0.80649 0.77485 0.78441 1.22831 1.20991 1.19344 1.21623 0.91302 0.97704 0.84474 1.22067 0.96976 0.95574 0.88641 0.93914 0.94322 0.91089 0.88538 0.92715 0.89510 0.89973 0.91972 0.87672 0.94432 0.88667 0.90351 0.86647 0.90026 0.96042 0.88665 0.94384 0.91785 0.94318 0.94912 0.95833 0.91195 0.87430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.20 7.60 71.98 0.55 -3.65 16 2 C 0.14 3.36 3.07 44.97 0.14 3.50 16 3 H 0.09 1.84 7.50 -2.38 -0.02 1.82 16 4 C -0.13 -2.14 5.37 30.67 0.16 -1.97 16 5 C -0.11 -1.33 5.68 30.62 0.17 -1.16 16 6 C -0.12 -1.68 5.56 30.67 0.17 -1.51 16 7 C 0.12 2.54 3.09 44.97 0.14 2.68 16 8 H 0.07 1.73 6.37 -2.39 -0.02 1.72 16 9 C -0.16 -2.61 9.03 71.98 0.65 -1.96 16 10 N -0.58 -16.49 2.68 -772.88 -2.07 -18.56 16 11 C 0.51 20.13 5.49 87.27 0.48 20.61 16 12 O -0.53 -25.91 12.13 -3.23 -0.04 -25.95 16 13 C 0.51 20.88 5.46 87.27 0.48 21.36 16 14 O -0.56 -25.48 16.57 -3.24 -0.05 -25.53 16 15 N -0.56 -20.10 2.45 -831.81 -2.04 -22.14 16 16 C 0.12 3.69 5.71 84.40 0.48 4.17 16 17 C -0.16 -5.49 5.66 29.21 0.17 -5.33 16 18 C 0.16 6.24 5.63 87.21 0.49 6.73 16 19 N -0.60 -30.62 2.52 -698.07 -1.76 -32.38 16 20 C -0.26 -15.33 9.22 84.03 0.77 -14.56 16 21 H 0.05 2.84 7.84 -2.91 -0.02 2.82 16 22 C -0.04 -2.16 5.08 84.86 0.43 -1.73 16 23 N -0.93 -56.97 10.96 21.65 0.24 -56.73 16 24 Si 0.95 49.40 29.56 68.60 2.03 51.43 16 25 H -0.30 -16.21 7.11 99.48 0.71 -15.51 16 26 H -0.28 -14.33 7.11 99.48 0.71 -13.63 16 27 H -0.27 -13.33 7.11 99.48 0.71 -12.63 16 28 C 0.17 8.46 5.15 86.57 0.45 8.91 16 29 C 0.09 3.25 5.13 87.56 0.45 3.70 16 30 H 0.04 1.63 6.72 -2.39 -0.02 1.62 16 31 H 0.04 1.44 6.79 -2.39 -0.02 1.42 16 32 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 33 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.75 6.50 -2.39 -0.02 0.74 16 37 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 39 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.08 1.06 5.74 -2.39 -0.01 1.05 16 42 H 0.12 2.40 8.05 -2.39 -0.02 2.38 16 43 H 0.08 2.43 7.18 -2.39 -0.02 2.42 16 44 H 0.02 0.94 7.91 -2.39 -0.02 0.92 16 45 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 46 H 0.04 1.57 8.02 -2.39 -0.02 1.55 16 47 H 0.06 2.15 7.59 -2.39 -0.02 2.13 16 48 H 0.25 14.90 8.31 -92.72 -0.77 14.13 16 49 H 0.03 1.91 6.41 -2.39 -0.02 1.89 16 50 H 0.02 1.21 7.93 -2.39 -0.02 1.19 16 51 H 0.07 2.34 6.74 -2.39 -0.02 2.32 16 52 H 0.11 2.94 7.72 -2.39 -0.02 2.92 16 Total: -1.00 -81.03 386.71 3.38 -77.65 By element: Atomic # 1 Polarization: 11.51 SS G_CDS: 0.90 Total: 12.41 kcal Atomic # 6 Polarization: 33.61 SS G_CDS: 6.18 Total: 39.79 kcal Atomic # 7 Polarization: -124.17 SS G_CDS: -5.63 Total: -129.80 kcal Atomic # 8 Polarization: -51.38 SS G_CDS: -0.09 Total: -51.48 kcal Atomic # 14 Polarization: 49.40 SS G_CDS: 2.03 Total: 51.43 kcal Total: -81.03 3.38 -77.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000982998902.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.902 kcal (2) G-P(sol) polarization free energy of solvation -81.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds