Wall clock time and date at job start Tue Mar 31 2020 21:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58274 * 2 1 4 4 C 1.53192 * 109.58724 * 239.72276 * 2 1 3 5 5 C 1.53038 * 109.31156 * 185.43439 * 4 2 1 6 6 C 1.53036 * 109.54136 * 61.36385 * 5 4 2 7 7 C 1.53190 * 109.31301 * 298.63564 * 6 5 4 8 8 H 1.09000 * 109.58691 * 294.84654 * 7 6 5 9 9 C 1.52997 * 109.59192 * 174.42106 * 7 6 5 10 10 N 1.46923 * 109.58746 * 120.28382 * 2 1 3 11 11 C 1.34777 * 120.63132 * 353.53943 * 10 2 1 12 12 O 1.21350 * 119.99810 * 7.28543 * 11 10 2 13 13 C 1.49449 * 120.00003 * 187.28971 * 11 10 2 14 14 O 1.21355 * 119.99720 * 264.71127 * 13 11 10 15 15 N 1.34780 * 120.00116 * 84.70484 * 13 11 10 16 16 C 1.46917 * 120.63082 * 4.65141 * 15 13 11 17 17 C 1.53625 * 108.54511 * 126.36355 * 16 15 13 18 18 C 1.53049 * 109.23826 * 54.85772 * 17 16 15 19 19 N 1.46501 * 109.45639 * 178.48966 * 18 17 16 20 20 C 1.36935 * 119.99815 * 275.06821 * 19 18 17 21 21 H 1.07996 * 120.00474 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99722 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47096 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47478 * 119.99437 * 24 22 20 27 27 H 1.48498 * 109.47364 * 239.99645 * 24 22 20 28 28 C 1.53040 * 109.53482 * 298.51178 * 18 17 16 29 29 C 1.46919 * 120.62907 * 184.93026 * 15 13 11 30 30 H 1.08999 * 109.46974 * 178.66004 * 1 2 3 31 31 H 1.09002 * 109.47074 * 298.66162 * 1 2 3 32 32 H 1.08998 * 109.47496 * 58.66284 * 1 2 3 33 33 H 1.09001 * 109.49492 * 305.38452 * 4 2 1 34 34 H 1.08999 * 109.49689 * 65.47738 * 4 2 1 35 35 H 1.09002 * 109.45898 * 181.38348 * 5 4 2 36 36 H 1.08992 * 109.46011 * 301.34107 * 5 4 2 37 37 H 1.09007 * 109.50065 * 58.58280 * 6 5 4 38 38 H 1.08997 * 109.50241 * 178.68411 * 6 5 4 39 39 H 1.09003 * 109.46802 * 54.50431 * 9 7 6 40 40 H 1.08994 * 109.47418 * 174.50816 * 9 7 6 41 41 H 1.09002 * 109.46977 * 294.50976 * 9 7 6 42 42 H 1.08995 * 109.59000 * 246.19992 * 16 15 13 43 43 H 1.09004 * 109.58572 * 6.62390 * 16 15 13 44 44 H 1.08993 * 109.63659 * 294.86952 * 17 16 15 45 45 H 1.08996 * 109.43171 * 174.72278 * 17 16 15 46 46 H 1.09000 * 109.45797 * 58.53139 * 18 17 16 47 47 H 0.97000 * 120.00015 * 95.06969 * 19 18 17 48 48 H 0.96997 * 120.00210 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.49832 * 301.41059 * 28 18 17 50 50 H 1.09003 * 109.49361 * 181.31593 * 28 18 17 51 51 H 1.09000 * 109.59299 * 353.37478 * 29 15 13 52 52 H 1.09000 * 109.59372 * 113.80123 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5678 -0.8432 -1.1730 6 6 3.9604 -1.6607 0.0597 7 6 3.4686 -0.9436 1.3209 8 1 3.9920 0.0064 1.4287 9 6 3.7340 -1.8206 2.5462 10 7 2.0226 -0.6980 1.1953 11 6 1.1671 -1.1064 2.1534 12 8 -0.0300 -1.0186 1.9754 13 6 1.6929 -1.6673 3.4350 14 8 1.8073 -2.8679 3.5701 15 7 2.0402 -0.8398 4.4406 16 6 1.8131 0.6076 4.3312 17 6 1.0110 1.0704 5.5569 18 6 1.7453 0.6442 6.8304 19 7 1.0028 1.1145 8.0024 20 6 1.1976 2.3863 8.4711 21 1 1.8982 3.0428 7.9766 22 6 0.4945 2.8319 9.5820 23 7 -0.3597 2.0320 10.1845 24 14 0.7606 4.5665 10.2220 25 1 1.7656 5.2578 9.3751 26 1 -0.5224 5.3129 10.1773 27 1 1.2505 4.5077 11.6226 28 6 1.8521 -0.8819 6.8730 29 6 2.6586 -1.3673 5.6644 30 1 -0.3633 -1.0274 -0.0240 31 1 -0.3633 0.4929 0.9018 32 1 -0.3634 0.5344 -0.8777 33 1 1.6050 -1.7245 -1.2923 34 1 1.7638 -0.1653 -2.1372 35 1 3.9381 -1.3388 -2.0704 36 1 4.0045 0.1529 -1.1022 37 1 3.5037 -2.6488 0.0016 38 1 5.0449 -1.7624 0.0986 39 1 4.7892 -2.0919 2.5771 40 1 3.4737 -1.2702 3.4502 41 1 3.1281 -2.7246 2.4840 42 1 2.7711 1.1265 4.3008 43 1 1.2504 0.8215 3.4225 44 1 0.0203 0.6164 5.5391 45 1 0.9148 2.1559 5.5386 46 1 2.7450 1.0785 6.8357 47 1 0.3733 0.5251 8.4464 48 1 -0.8513 2.3434 10.9605 49 1 0.8534 -1.3175 6.8428 50 1 2.3545 -1.1858 7.7914 51 1 2.6539 -2.4570 5.6359 52 1 3.6842 -1.0063 5.7406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997139875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:38 Heat of formation + Delta-G solvation = 1.077269 kcal Electronic energy + Delta-G solvation = -31793.405725 eV Core-core repulsion = 27795.520321 eV Total energy + Delta-G solvation = -3997.885404 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.98846 -39.66587 -37.84644 -37.61083 -34.69138 -34.05684 -33.17485 -32.12014 -30.97262 -29.41586 -29.23328 -26.91827 -25.88149 -24.58520 -23.37571 -23.09182 -21.97595 -21.87576 -20.94594 -19.89234 -18.84329 -17.86579 -17.10728 -16.80571 -16.40904 -15.74317 -15.50096 -15.27527 -14.87558 -14.73653 -14.44737 -14.19293 -13.97378 -13.88273 -13.73527 -13.53733 -13.49390 -13.18740 -12.88509 -12.64956 -12.45025 -12.20651 -12.04984 -11.89556 -11.67478 -11.50223 -11.27147 -11.21812 -11.13743 -11.02219 -10.93053 -10.85707 -10.78354 -10.52405 -10.48855 -10.23226 -9.87058 -9.71655 -9.18361 -8.96105 -8.86402 -8.55137 -7.01537 -5.80474 -3.10111 1.91322 2.14571 2.44001 3.17219 3.40323 3.45518 3.48267 3.97104 4.31476 4.40690 4.43674 4.54417 4.58531 4.83504 4.86837 4.94599 5.01966 5.16203 5.18986 5.21469 5.23793 5.29726 5.35021 5.46219 5.46931 5.48874 5.53060 5.54719 5.61110 5.63039 5.66076 5.73540 5.83780 5.85473 5.87609 6.00473 6.02267 6.12264 6.17648 6.26265 6.31912 6.41445 6.43921 6.52384 6.81377 6.95149 6.98928 7.15056 7.65562 7.68432 7.80253 8.37439 9.48868 10.05927 10.40425 11.42038 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.002828 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.235567 B = 9900.248884 C =10330.301639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.142 3.858 3 H 0.078 0.922 4 C -0.133 4.133 5 C -0.121 4.121 6 C -0.130 4.130 7 C 0.141 3.859 8 H 0.080 0.920 9 C -0.256 4.256 10 N -0.594 5.594 11 C 0.518 3.482 12 O -0.502 6.502 13 C 0.541 3.459 14 O -0.526 6.526 15 N -0.600 5.600 16 C 0.107 3.893 17 C -0.150 4.150 18 C 0.180 3.820 19 N -0.723 5.723 20 C -0.241 4.241 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.140 4.140 29 C 0.113 3.887 30 H 0.068 0.932 31 H 0.078 0.922 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.049 0.951 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.066 0.934 50 H 0.079 0.921 51 H 0.093 0.907 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.616 -6.016 -23.434 26.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.040 3.960 3 H 0.096 0.904 4 C -0.171 4.171 5 C -0.159 4.159 6 C -0.168 4.168 7 C 0.038 3.962 8 H 0.098 0.902 9 C -0.314 4.314 10 N -0.330 5.330 11 C 0.301 3.699 12 O -0.376 6.376 13 C 0.327 3.673 14 O -0.403 6.403 15 N -0.335 5.335 16 C -0.016 4.016 17 C -0.192 4.192 18 C 0.069 3.931 19 N -0.364 5.364 20 C -0.372 4.372 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.179 4.179 29 C -0.008 4.008 30 H 0.087 0.913 31 H 0.097 0.903 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.095 0.905 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.096 0.904 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.128 0.872 42 H 0.092 0.908 43 H 0.090 0.910 44 H 0.081 0.919 45 H 0.096 0.904 46 H 0.067 0.933 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.098 0.902 51 H 0.111 0.889 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.058 -6.417 -23.370 26.239 hybrid contribution -0.061 0.897 0.467 1.013 sum 9.996 -5.519 -22.903 25.592 Atomic orbital electron populations 1.22290 0.92271 1.03638 1.01818 1.21409 0.96091 0.95096 0.83442 0.90422 1.22037 0.95966 1.01645 0.97431 1.21542 0.95728 1.00570 0.98021 1.21978 1.01340 0.99672 0.93781 1.21383 0.79476 0.99152 0.96184 0.90186 1.24177 1.05151 1.03351 0.98682 1.48370 1.07346 1.57006 1.20324 1.20259 0.86855 0.77873 0.84939 1.90875 1.14813 1.52471 1.79415 1.19751 0.75361 0.87204 0.84984 1.90718 1.53741 1.14346 1.81526 1.48445 1.59650 1.08218 1.17155 1.22003 1.00748 0.78663 1.00168 1.22772 0.99713 1.02047 0.94624 1.20160 0.94837 0.90896 0.87165 1.42435 1.49319 1.14104 1.30506 1.19260 1.19425 0.89906 1.08588 0.91101 1.24761 0.99325 0.98199 0.98613 1.69671 1.29714 1.35380 1.23128 0.86137 0.77264 0.84313 0.78569 1.20548 1.21874 1.21871 1.22223 1.00805 0.97991 0.96912 1.21768 0.96140 1.00398 0.82539 0.91265 0.90293 0.93377 0.91282 0.90515 0.91452 0.91607 0.91172 0.90444 0.90836 0.87829 0.87238 0.90780 0.90989 0.91866 0.90437 0.93298 0.78197 0.93499 0.91571 0.90220 0.88913 0.90761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 7.60 37.16 0.28 -1.23 16 2 C 0.14 1.27 3.48 -67.60 -0.24 1.04 16 3 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 4 C -0.13 -0.94 5.37 -26.61 -0.14 -1.08 16 5 C -0.12 -0.73 5.88 -26.69 -0.16 -0.88 16 6 C -0.13 -0.91 5.37 -26.61 -0.14 -1.05 16 7 C 0.14 1.21 3.49 -67.45 -0.24 0.98 16 8 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 9 C -0.26 -2.57 7.15 37.16 0.27 -2.31 16 10 N -0.59 -6.29 2.98 -158.02 -0.47 -6.77 16 11 C 0.52 7.25 5.27 -11.59 -0.06 7.19 16 12 O -0.50 -8.26 12.52 5.50 0.07 -8.19 16 13 C 0.54 7.92 3.98 -11.58 -0.05 7.88 16 14 O -0.53 -8.77 13.79 5.49 0.08 -8.70 16 15 N -0.60 -8.04 1.62 -173.02 -0.28 -8.32 16 16 C 0.11 1.40 6.34 -3.49 -0.02 1.38 16 17 C -0.15 -2.52 5.68 -26.38 -0.15 -2.67 16 18 C 0.18 3.31 2.73 -67.88 -0.19 3.12 16 19 N -0.72 -17.46 5.12 -53.38 -0.27 -17.73 16 20 C -0.24 -6.44 9.93 -15.06 -0.15 -6.59 16 21 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 24 Si 0.91 21.95 29.55 -169.99 -5.02 16.93 16 25 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 26 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C -0.14 -2.21 5.55 -26.61 -0.15 -2.36 16 29 C 0.11 1.47 5.69 -3.71 -0.02 1.45 16 30 H 0.07 0.86 7.04 -51.93 -0.37 0.49 16 31 H 0.08 1.00 6.44 -51.93 -0.33 0.67 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.10 1.14 3.42 -52.54 -0.18 0.96 16 41 H 0.11 1.39 4.86 -53.57 -0.26 1.13 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.07 0.92 6.37 -51.93 -0.33 0.59 16 44 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 46 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 47 H 0.38 10.06 7.80 -40.82 -0.32 9.74 16 48 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 49 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 50 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 51 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 52 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 386.37 15.07 5.82 5.82 Total: -1.00 -31.63 386.37 -9.48 -41.12 By element: Atomic # 1 Polarization: 17.42 SS G_CDS: -8.88 Total: 8.54 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -1.24 Total: 4.39 kcal Atomic # 7 Polarization: -59.61 SS G_CDS: -0.30 Total: -59.91 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: 0.14 Total: -16.89 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.63 -9.48 -41.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997139875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.195 kcal (2) G-P(sol) polarization free energy of solvation -31.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds