Wall clock time and date at job start Tue Mar 31 2020 21:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.58274 * 2 1 4 4 C 1.53192 * 109.58724 * 239.72276 * 2 1 3 5 5 C 1.53038 * 109.31156 * 185.43439 * 4 2 1 6 6 C 1.53036 * 109.54136 * 61.36385 * 5 4 2 7 7 C 1.53190 * 109.31301 * 298.63564 * 6 5 4 8 8 H 1.09000 * 109.58691 * 294.84654 * 7 6 5 9 9 C 1.52997 * 109.59192 * 174.42106 * 7 6 5 10 10 N 1.46923 * 109.58746 * 120.28382 * 2 1 3 11 11 C 1.34777 * 120.63132 * 353.53943 * 10 2 1 12 12 O 1.21350 * 119.99810 * 7.28543 * 11 10 2 13 13 C 1.49449 * 120.00003 * 187.28971 * 11 10 2 14 14 O 1.21355 * 119.99720 * 264.71127 * 13 11 10 15 15 N 1.34780 * 120.00116 * 84.70484 * 13 11 10 16 16 C 1.46917 * 120.63082 * 4.65141 * 15 13 11 17 17 C 1.53625 * 108.54511 * 126.36355 * 16 15 13 18 18 C 1.53049 * 109.23826 * 54.85772 * 17 16 15 19 19 N 1.46501 * 109.45639 * 178.48966 * 18 17 16 20 20 C 1.36935 * 119.99815 * 275.06821 * 19 18 17 21 21 H 1.07996 * 120.00474 * 0.02562 * 20 19 18 22 22 C 1.38815 * 119.99722 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00096 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00188 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47096 * 359.97438 * 24 22 20 26 26 H 1.48501 * 109.47478 * 119.99437 * 24 22 20 27 27 H 1.48498 * 109.47364 * 239.99645 * 24 22 20 28 28 C 1.53040 * 109.53482 * 298.51178 * 18 17 16 29 29 C 1.46919 * 120.62907 * 184.93026 * 15 13 11 30 30 H 1.08999 * 109.46974 * 178.66004 * 1 2 3 31 31 H 1.09002 * 109.47074 * 298.66162 * 1 2 3 32 32 H 1.08998 * 109.47496 * 58.66284 * 1 2 3 33 33 H 1.09001 * 109.49492 * 305.38452 * 4 2 1 34 34 H 1.08999 * 109.49689 * 65.47738 * 4 2 1 35 35 H 1.09002 * 109.45898 * 181.38348 * 5 4 2 36 36 H 1.08992 * 109.46011 * 301.34107 * 5 4 2 37 37 H 1.09007 * 109.50065 * 58.58280 * 6 5 4 38 38 H 1.08997 * 109.50241 * 178.68411 * 6 5 4 39 39 H 1.09003 * 109.46802 * 54.50431 * 9 7 6 40 40 H 1.08994 * 109.47418 * 174.50816 * 9 7 6 41 41 H 1.09002 * 109.46977 * 294.50976 * 9 7 6 42 42 H 1.08995 * 109.59000 * 246.19992 * 16 15 13 43 43 H 1.09004 * 109.58572 * 6.62390 * 16 15 13 44 44 H 1.08993 * 109.63659 * 294.86952 * 17 16 15 45 45 H 1.08996 * 109.43171 * 174.72278 * 17 16 15 46 46 H 1.09000 * 109.45797 * 58.53139 * 18 17 16 47 47 H 0.97000 * 120.00015 * 95.06969 * 19 18 17 48 48 H 0.96997 * 120.00210 * 180.02562 * 23 22 20 49 49 H 1.09000 * 109.49832 * 301.41059 * 28 18 17 50 50 H 1.09003 * 109.49361 * 181.31593 * 28 18 17 51 51 H 1.09000 * 109.59299 * 353.37478 * 29 15 13 52 52 H 1.09000 * 109.59372 * 113.80123 * 29 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8953 1.0269 0.0000 4 6 2.0436 -0.7277 -1.2464 5 6 3.5678 -0.8432 -1.1730 6 6 3.9604 -1.6607 0.0597 7 6 3.4686 -0.9436 1.3209 8 1 3.9920 0.0064 1.4287 9 6 3.7340 -1.8206 2.5462 10 7 2.0226 -0.6980 1.1953 11 6 1.1671 -1.1064 2.1534 12 8 -0.0300 -1.0186 1.9754 13 6 1.6929 -1.6673 3.4350 14 8 1.8073 -2.8679 3.5701 15 7 2.0402 -0.8398 4.4406 16 6 1.8131 0.6076 4.3312 17 6 1.0110 1.0704 5.5569 18 6 1.7453 0.6442 6.8304 19 7 1.0028 1.1145 8.0024 20 6 1.1976 2.3863 8.4711 21 1 1.8982 3.0428 7.9766 22 6 0.4945 2.8319 9.5820 23 7 -0.3597 2.0320 10.1845 24 14 0.7606 4.5665 10.2220 25 1 1.7656 5.2578 9.3751 26 1 -0.5224 5.3129 10.1773 27 1 1.2505 4.5077 11.6226 28 6 1.8521 -0.8819 6.8730 29 6 2.6586 -1.3673 5.6644 30 1 -0.3633 -1.0274 -0.0240 31 1 -0.3633 0.4929 0.9018 32 1 -0.3634 0.5344 -0.8777 33 1 1.6050 -1.7245 -1.2923 34 1 1.7638 -0.1653 -2.1372 35 1 3.9381 -1.3388 -2.0704 36 1 4.0045 0.1529 -1.1022 37 1 3.5037 -2.6488 0.0016 38 1 5.0449 -1.7624 0.0986 39 1 4.7892 -2.0919 2.5771 40 1 3.4737 -1.2702 3.4502 41 1 3.1281 -2.7246 2.4840 42 1 2.7711 1.1265 4.3008 43 1 1.2504 0.8215 3.4225 44 1 0.0203 0.6164 5.5391 45 1 0.9148 2.1559 5.5386 46 1 2.7450 1.0785 6.8357 47 1 0.3733 0.5251 8.4464 48 1 -0.8513 2.3434 10.9605 49 1 0.8534 -1.3175 6.8428 50 1 2.3545 -1.1858 7.7914 51 1 2.6539 -2.4570 5.6359 52 1 3.6842 -1.0063 5.7406 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997139875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:03:37 Heat of formation + Delta-G solvation = -18.393723 kcal Electronic energy + Delta-G solvation = -31794.250050 eV Core-core repulsion = 27795.520321 eV Total energy + Delta-G solvation = -3998.729730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -43.00777 -40.67527 -38.94610 -38.72791 -36.28667 -34.88467 -33.93662 -33.79911 -32.20381 -31.13126 -30.04014 -27.82504 -26.94083 -25.98239 -24.55364 -24.46597 -23.10769 -22.59833 -21.83959 -21.08225 -19.90507 -19.16431 -18.79832 -17.83909 -17.37324 -16.78268 -16.68180 -16.36786 -16.20578 -15.54200 -15.50725 -15.39199 -15.25013 -14.99764 -14.92849 -14.75848 -14.66398 -14.15049 -14.04813 -13.68540 -13.35566 -13.32998 -13.21893 -12.93749 -12.87604 -12.72540 -12.60117 -12.31538 -12.23257 -12.13104 -12.10022 -12.02934 -11.87064 -11.73521 -11.67899 -11.49173 -11.34947 -11.32541 -10.91708 -10.21512 -9.76996 -9.62200 -9.01315 -7.92465 -5.21524 0.88060 1.07152 1.38747 1.49141 1.49578 1.59428 2.20724 2.57596 2.98596 3.41002 3.66431 3.74913 3.79765 3.81746 3.83893 3.93590 3.99871 4.09519 4.21093 4.23528 4.29648 4.34863 4.38808 4.51383 4.53317 4.60563 4.63735 4.68552 4.77666 4.80480 4.82351 4.84237 4.93632 4.94908 5.01524 5.03380 5.08246 5.15318 5.20743 5.22860 5.26759 5.33119 5.43008 5.48492 5.53130 5.56005 5.59168 5.99513 6.07677 6.29053 6.63041 6.74976 7.34911 8.10598 8.33014 9.31578 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019092 B = 0.002828 C = 0.002710 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.235567 B = 9900.248884 C =10330.301639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.136 3.864 3 H 0.103 0.897 4 C -0.129 4.129 5 C -0.117 4.117 6 C -0.127 4.127 7 C 0.136 3.864 8 H 0.107 0.893 9 C -0.252 4.252 10 N -0.583 5.583 11 C 0.512 3.488 12 O -0.539 6.539 13 C 0.542 3.458 14 O -0.552 6.552 15 N -0.598 5.598 16 C 0.119 3.881 17 C -0.141 4.141 18 C 0.176 3.824 19 N -0.739 5.739 20 C -0.232 4.232 21 H 0.083 0.917 22 C -0.081 4.081 23 N -0.974 5.974 24 Si 0.971 3.029 25 H -0.260 1.260 26 H -0.299 1.299 27 H -0.297 1.297 28 C -0.132 4.132 29 C 0.121 3.879 30 H 0.042 0.958 31 H 0.053 0.947 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.097 0.903 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.093 0.907 40 H 0.096 0.904 41 H 0.079 0.921 42 H 0.109 0.891 43 H 0.076 0.924 44 H 0.034 0.966 45 H 0.068 0.932 46 H 0.063 0.937 47 H 0.369 0.631 48 H 0.249 0.751 49 H 0.042 0.958 50 H 0.081 0.919 51 H 0.092 0.908 52 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.937 -4.490 -25.945 29.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.035 3.965 3 H 0.121 0.879 4 C -0.167 4.167 5 C -0.154 4.154 6 C -0.165 4.165 7 C 0.034 3.966 8 H 0.125 0.875 9 C -0.309 4.309 10 N -0.318 5.318 11 C 0.295 3.705 12 O -0.416 6.416 13 C 0.328 3.672 14 O -0.431 6.431 15 N -0.331 5.331 16 C -0.003 4.003 17 C -0.182 4.182 18 C 0.067 3.933 19 N -0.378 5.378 20 C -0.363 4.363 21 H 0.101 0.899 22 C -0.273 4.273 23 N -0.625 5.625 24 Si 0.801 3.199 25 H -0.184 1.184 26 H -0.227 1.227 27 H -0.224 1.224 28 C -0.170 4.170 29 C 0.000 4.000 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.115 0.885 35 H 0.098 0.902 36 H 0.101 0.899 37 H 0.069 0.931 38 H 0.117 0.883 39 H 0.112 0.888 40 H 0.114 0.886 41 H 0.098 0.902 42 H 0.127 0.873 43 H 0.094 0.906 44 H 0.053 0.947 45 H 0.087 0.913 46 H 0.081 0.919 47 H 0.200 0.800 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.100 0.900 51 H 0.110 0.890 52 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 13.456 -4.879 -25.956 29.641 hybrid contribution -1.070 0.352 1.164 1.620 sum 12.386 -4.527 -24.792 28.081 Atomic orbital electron populations 1.22149 0.93885 1.01893 1.01553 1.21656 0.94890 0.96445 0.83502 0.87938 1.22019 0.96955 1.00641 0.97052 1.21544 0.94522 1.01428 0.97896 1.21979 1.02418 0.98646 0.93437 1.21668 0.78136 1.00333 0.96438 0.87508 1.24014 1.05818 1.02092 0.99001 1.48524 1.08021 1.55507 1.19766 1.20235 0.86736 0.78141 0.85400 1.90878 1.16257 1.54451 1.80061 1.19931 0.74805 0.86907 0.85535 1.90716 1.54834 1.15477 1.82086 1.48463 1.59385 1.08249 1.17038 1.21940 1.01775 0.78490 0.98130 1.22553 0.98722 1.01220 0.95727 1.20423 0.94654 0.92476 0.85708 1.42702 1.49595 1.13326 1.32145 1.19696 1.18121 0.90801 1.07722 0.89870 1.25580 1.00005 1.02012 0.99675 1.69839 1.31518 1.37293 1.23849 0.85099 0.77055 0.80038 0.77751 1.18392 1.22670 1.22402 1.22098 1.00219 0.96043 0.98690 1.21763 0.96982 1.00437 0.80828 0.93932 0.92808 0.91125 0.93150 0.88483 0.90198 0.89873 0.93097 0.88313 0.88803 0.88602 0.90234 0.87281 0.90583 0.94744 0.91317 0.91939 0.79998 0.94264 0.93889 0.90049 0.89010 0.87409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.86 7.60 71.98 0.55 -2.31 16 2 C 0.14 2.14 3.48 44.98 0.16 2.29 16 3 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 4 C -0.13 -1.47 5.37 30.67 0.16 -1.31 16 5 C -0.12 -0.94 5.88 30.62 0.18 -0.76 16 6 C -0.13 -1.37 5.37 30.67 0.16 -1.21 16 7 C 0.14 1.91 3.49 44.92 0.16 2.06 16 8 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 9 C -0.25 -4.47 7.15 71.98 0.51 -3.96 16 10 N -0.58 -11.36 2.98 -772.23 -2.30 -13.66 16 11 C 0.51 14.30 5.27 87.27 0.46 14.76 16 12 O -0.54 -18.47 12.52 -3.25 -0.04 -18.52 16 13 C 0.54 15.72 3.98 87.27 0.35 16.06 16 14 O -0.55 -18.70 13.79 -3.26 -0.04 -18.74 16 15 N -0.60 -15.24 1.62 -819.67 -1.33 -16.57 16 16 C 0.12 2.87 6.34 86.51 0.55 3.42 16 17 C -0.14 -4.68 5.68 30.82 0.17 -4.50 16 18 C 0.18 6.34 2.73 45.02 0.12 6.46 16 19 N -0.74 -36.08 5.12 -322.80 -1.65 -37.74 16 20 C -0.23 -12.33 9.93 84.03 0.83 -11.50 16 21 H 0.08 4.15 7.83 -2.91 -0.02 4.12 16 22 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 23 N -0.97 -59.81 13.06 21.65 0.28 -59.53 16 24 Si 0.97 45.34 29.55 68.60 2.03 47.36 16 25 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 27 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 28 C -0.13 -4.11 5.55 30.67 0.17 -3.94 16 29 C 0.12 2.94 5.69 86.36 0.49 3.44 16 30 H 0.04 1.10 7.04 -2.39 -0.02 1.08 16 31 H 0.05 1.39 6.44 -2.39 -0.02 1.38 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 38 H 0.10 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.10 1.86 3.42 -3.59 -0.01 1.85 16 41 H 0.08 1.97 4.86 -28.37 -0.14 1.83 16 42 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 43 H 0.08 1.83 6.37 -2.38 -0.02 1.82 16 44 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 46 H 0.06 2.12 8.08 -2.39 -0.02 2.10 16 47 H 0.37 20.02 7.80 -92.71 -0.72 19.30 16 48 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 49 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.08 2.51 8.14 -2.39 -0.02 2.49 16 51 H 0.09 2.32 7.00 -2.39 -0.02 2.30 16 52 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 Total: -1.00 -72.38 386.37 2.50 -69.89 By element: Atomic # 1 Polarization: 32.54 SS G_CDS: 0.06 Total: 32.60 kcal Atomic # 6 Polarization: 9.40 SS G_CDS: 5.50 Total: 14.90 kcal Atomic # 7 Polarization: -122.49 SS G_CDS: -5.01 Total: -127.50 kcal Atomic # 8 Polarization: -37.17 SS G_CDS: -0.09 Total: -37.26 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.36 kcal Total: -72.38 2.50 -69.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997139875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.494 kcal (2) G-P(sol) polarization free energy of solvation -72.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds