Wall clock time and date at job start Tue Mar 31 2020 21:04:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70354 * 2 1 4 4 C 1.53629 * 109.66167 * 120.59219 * 2 1 3 5 5 C 1.53045 * 109.23849 * 174.55066 * 4 2 1 6 6 C 1.53039 * 109.53921 * 298.50752 * 5 4 2 7 7 C 1.53197 * 109.31081 * 61.36646 * 6 5 4 8 8 H 1.08999 * 109.70550 * 185.50797 * 7 6 5 9 9 C 1.53003 * 109.58393 * 65.14997 * 7 6 5 10 10 N 1.46919 * 108.77859 * 305.36715 * 7 6 5 11 11 C 1.34772 * 120.63176 * 233.58807 * 10 7 6 12 12 O 1.21350 * 120.00330 * 185.41997 * 11 10 7 13 13 C 1.49449 * 120.00130 * 5.41608 * 11 10 7 14 14 O 1.21350 * 119.99717 * 354.27072 * 13 11 10 15 15 N 1.34780 * 120.00405 * 174.27512 * 13 11 10 16 16 C 1.46496 * 120.00119 * 180.27814 * 15 13 11 17 17 C 1.53041 * 109.45834 * 274.79029 * 16 15 13 18 18 C 1.53200 * 109.31184 * 178.61483 * 17 16 15 19 19 N 1.46925 * 108.77504 * 54.63426 * 18 17 16 20 20 C 1.36935 * 120.63226 * 126.41093 * 19 18 17 21 21 H 1.07993 * 120.00192 * 210.46321 * 20 19 18 22 22 C 1.38813 * 119.99733 * 30.46516 * 20 19 18 23 23 N 1.31617 * 119.99939 * 10.15295 * 22 20 19 24 24 Si 1.86798 * 119.99965 * 190.15030 * 22 20 19 25 25 H 1.48505 * 109.46831 * 60.00373 * 24 22 20 26 26 H 1.48502 * 109.47064 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47366 * 300.00494 * 24 22 20 28 28 C 1.46930 * 118.73685 * 306.39095 * 19 18 17 29 29 C 1.53036 * 109.46179 * 154.71842 * 16 15 13 30 30 H 1.09003 * 109.47446 * 174.69788 * 1 2 3 31 31 H 1.08995 * 109.47621 * 294.70191 * 1 2 3 32 32 H 1.09008 * 109.47315 * 54.70450 * 1 2 3 33 33 H 1.09000 * 109.63473 * 54.56182 * 4 2 1 34 34 H 1.08997 * 109.42826 * 294.41793 * 4 2 1 35 35 H 1.09003 * 109.45512 * 178.49274 * 5 4 2 36 36 H 1.09000 * 109.44729 * 58.52578 * 5 4 2 37 37 H 1.08997 * 109.50143 * 301.42092 * 6 5 4 38 38 H 1.08996 * 109.49983 * 181.31446 * 6 5 4 39 39 H 1.08997 * 109.47299 * 300.71415 * 9 7 6 40 40 H 1.09010 * 109.47152 * 60.71462 * 9 7 6 41 41 H 1.09002 * 109.47178 * 180.70568 * 9 7 6 42 42 H 0.96998 * 119.99561 * 359.97438 * 15 13 11 43 43 H 1.09004 * 109.45958 * 34.74828 * 16 15 13 44 44 H 1.09001 * 109.49762 * 298.56392 * 17 16 15 45 45 H 1.09001 * 109.49995 * 58.66068 * 17 16 15 46 46 H 1.08993 * 109.58235 * 294.84701 * 18 17 16 47 47 H 1.09003 * 109.58297 * 174.41619 * 18 17 16 48 48 H 0.97001 * 119.99668 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.58509 * 293.82181 * 28 19 18 50 50 H 1.09006 * 109.58298 * 173.39871 * 28 19 18 51 51 H 1.09003 * 109.49787 * 301.33515 * 29 16 15 52 52 H 1.09003 * 109.49534 * 61.43440 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7363 1.2454 5 6 3.5711 -0.8498 1.1677 6 6 3.9615 -1.6628 -0.0687 7 6 3.4656 -0.9420 -1.3263 8 1 3.6534 -1.5616 -2.2032 9 6 4.1985 0.3928 -1.4750 10 7 2.0226 -0.6995 -1.1945 11 6 1.1675 -1.1062 -2.1536 12 8 -0.0082 -0.8145 -2.0817 13 6 1.6672 -1.9163 -3.3057 14 8 2.8566 -2.1201 -3.4335 15 7 0.7969 -2.4205 -4.2029 16 6 1.2863 -3.2198 -5.3289 17 6 1.6953 -2.2905 -6.4740 18 6 2.2388 -3.1276 -7.6363 19 7 1.2334 -4.1336 -8.0052 20 6 0.7979 -4.2430 -9.2988 21 1 -0.2084 -4.5773 -9.5033 22 6 1.6500 -3.9243 -10.3473 23 7 2.9279 -3.7112 -10.1152 24 14 0.9829 -3.7979 -12.0875 25 1 -0.0622 -2.7443 -12.1416 26 1 2.0870 -3.4473 -13.0166 27 1 0.3934 -5.1008 -12.4876 28 6 0.7046 -5.0202 -6.9597 29 6 0.1784 -4.1620 -5.8050 30 1 -0.3634 -1.0233 -0.0950 31 1 -0.3634 0.4294 0.9336 32 1 -0.3634 0.5938 -0.8388 33 1 1.6095 -1.7337 1.2890 34 1 1.7687 -0.1771 2.1387 35 1 3.9441 -1.3480 2.0625 36 1 4.0062 0.1473 1.0990 37 1 3.5061 -2.6515 -0.0128 38 1 5.0460 -1.7630 -0.1107 39 1 4.0135 1.0088 -0.5950 40 1 5.2688 0.2108 -1.5727 41 1 3.8353 0.9097 -2.3633 42 1 -0.1538 -2.2579 -4.1005 43 1 2.1491 -3.8052 -5.0108 44 1 0.8274 -1.7226 -6.8093 45 1 2.4680 -1.6042 -6.1274 46 1 3.1584 -3.6255 -7.3292 47 1 2.4386 -2.4805 -8.4904 48 1 3.5233 -3.4889 -10.8480 49 1 1.4993 -5.6725 -6.5975 50 1 -0.1076 -5.6220 -7.3674 51 1 -0.1285 -4.8078 -4.9823 52 1 -0.6752 -3.5765 -6.1466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001003853593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:32 Heat of formation + Delta-G solvation = -27.774984 kcal Electronic energy + Delta-G solvation = -31030.235123 eV Core-core repulsion = 27031.098591 eV Total energy + Delta-G solvation = -3999.136532 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.31888 -39.36831 -37.92912 -37.43137 -34.68398 -33.50505 -33.03414 -32.15514 -30.15140 -29.64411 -29.26478 -26.74026 -25.77238 -24.48579 -23.42496 -22.46093 -22.21633 -21.47144 -20.53743 -19.84144 -18.97120 -17.27092 -16.88528 -16.68353 -16.09263 -15.85480 -15.46309 -15.16224 -14.80471 -14.57953 -14.31822 -14.04661 -13.87784 -13.64380 -13.53739 -13.25048 -13.11890 -13.02312 -12.83818 -12.60500 -12.45833 -12.13064 -12.03297 -11.96956 -11.54116 -11.44789 -11.24189 -11.07942 -11.03316 -10.96466 -10.82902 -10.75619 -10.42421 -10.28296 -10.13410 -10.01700 -9.82568 -9.68945 -8.90965 -8.81964 -8.69963 -8.46674 -6.66866 -5.79279 -3.27557 1.43880 2.30738 3.22912 3.37504 3.43220 3.43885 3.46293 4.30641 4.47410 4.49956 4.51258 4.62809 4.78187 4.94535 5.09422 5.13499 5.22349 5.28310 5.35984 5.39376 5.40144 5.45193 5.54082 5.56646 5.58676 5.65908 5.73392 5.75392 5.80261 5.86290 5.90054 5.94452 6.03858 6.11312 6.18328 6.20776 6.32522 6.37590 6.49509 6.54360 6.62477 6.72312 6.82833 6.90191 7.06408 7.33717 7.38919 7.69953 7.77401 7.80627 8.10016 8.45990 9.20507 9.81664 10.38756 11.28600 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.002483 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.495795 B =11272.473298 C =11698.020201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.137 3.863 3 H 0.074 0.926 4 C -0.129 4.129 5 C -0.124 4.124 6 C -0.126 4.126 7 C 0.065 3.935 8 H 0.175 0.825 9 C -0.156 4.156 10 N -0.572 5.572 11 C 0.508 3.492 12 O -0.519 6.519 13 C 0.504 3.496 14 O -0.511 6.511 15 N -0.686 5.686 16 C 0.147 3.853 17 C -0.148 4.148 18 C 0.174 3.826 19 N -0.593 5.593 20 C -0.254 4.254 21 H 0.065 0.935 22 C 0.004 3.996 23 N -0.905 5.905 24 Si 0.906 3.094 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.149 3.851 29 C -0.140 4.140 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.067 0.933 34 H 0.073 0.927 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.068 0.932 41 H 0.056 0.944 42 H 0.408 0.592 43 H 0.087 0.913 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.021 0.979 47 H 0.095 0.905 48 H 0.255 0.745 49 H 0.021 0.979 50 H 0.060 0.940 51 H 0.057 0.943 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.385 6.698 22.994 23.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.035 3.965 3 H 0.092 0.908 4 C -0.167 4.167 5 C -0.162 4.162 6 C -0.164 4.164 7 C -0.036 4.036 8 H 0.190 0.810 9 C -0.214 4.214 10 N -0.305 5.305 11 C 0.291 3.709 12 O -0.396 6.396 13 C 0.285 3.715 14 O -0.390 6.390 15 N -0.336 5.336 16 C 0.044 3.956 17 C -0.188 4.188 18 C 0.048 3.952 19 N -0.316 5.316 20 C -0.384 4.384 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.549 5.549 24 Si 0.736 3.264 25 H -0.210 1.210 26 H -0.216 1.216 27 H -0.208 1.208 28 C 0.022 3.978 29 C -0.180 4.180 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.075 0.925 42 H 0.243 0.757 43 H 0.105 0.895 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.039 0.961 47 H 0.113 0.887 48 H 0.065 0.935 49 H 0.039 0.961 50 H 0.078 0.922 51 H 0.076 0.924 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.050 6.727 22.778 23.750 hybrid contribution -0.621 0.319 -0.618 0.933 sum -0.671 7.046 22.159 23.262 Atomic orbital electron populations 1.22237 0.92537 1.03776 1.01285 1.21483 0.95767 0.95388 0.83862 0.90766 1.22067 0.96235 1.01288 0.97131 1.21597 0.95493 1.00840 0.98242 1.21885 1.01301 0.99080 0.94109 1.23171 0.77503 0.99149 1.03748 0.80992 1.22090 1.00628 0.97084 1.01639 1.48150 1.07988 1.55447 1.18950 1.20204 0.86059 0.80991 0.83627 1.90791 1.16707 1.55968 1.76156 1.20248 0.86683 0.80847 0.83717 1.90222 1.15343 1.59291 1.74145 1.46234 1.10810 1.51085 1.25463 1.21272 0.97804 0.92045 0.84438 1.22618 1.00789 0.98632 0.96777 1.20817 0.89624 0.90583 0.94222 1.44075 1.47822 1.35254 1.04417 1.19137 0.95249 1.42151 0.81878 0.91744 1.25161 0.94893 1.01291 0.98137 1.69950 1.02421 1.51464 1.31083 0.86321 0.77767 0.78090 0.84241 1.20997 1.21588 1.20849 1.20849 0.96748 0.91625 0.88592 1.22372 0.97742 0.98435 0.99482 0.91636 0.93604 0.90159 0.91460 0.90842 0.91837 0.91561 0.91713 0.90641 0.92904 0.91288 0.92486 0.75660 0.89498 0.92452 0.92753 0.96092 0.88701 0.93464 0.96092 0.92193 0.92434 0.91591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.44 7.62 37.15 0.28 -1.16 16 2 C 0.14 1.31 3.09 -67.37 -0.21 1.11 16 3 H 0.07 0.66 7.48 -51.93 -0.39 0.28 16 4 C -0.13 -1.01 5.40 -26.38 -0.14 -1.15 16 5 C -0.12 -0.91 5.67 -26.69 -0.15 -1.06 16 6 C -0.13 -1.11 5.55 -26.61 -0.15 -1.25 16 7 C 0.07 0.70 3.06 -67.60 -0.21 0.49 16 8 H 0.17 2.28 3.69 -57.23 -0.21 2.06 16 9 C -0.16 -1.48 9.02 37.16 0.34 -1.14 16 10 N -0.57 -6.54 2.68 -157.98 -0.42 -6.96 16 11 C 0.51 6.86 7.58 -11.59 -0.09 6.78 16 12 O -0.52 -7.48 12.04 5.50 0.07 -7.41 16 13 C 0.50 7.42 7.78 -11.58 -0.09 7.33 16 14 O -0.51 -8.28 12.67 5.50 0.07 -8.21 16 15 N -0.69 -9.93 5.07 -54.20 -0.27 -10.21 16 16 C 0.15 2.47 2.42 -67.89 -0.16 2.30 16 17 C -0.15 -2.86 5.65 -26.61 -0.15 -3.01 16 18 C 0.17 4.12 5.26 -3.71 -0.02 4.10 16 19 N -0.59 -14.51 2.99 -172.31 -0.52 -15.03 16 20 C -0.25 -6.85 9.59 -15.06 -0.14 -6.99 16 21 H 0.06 1.69 7.85 -52.49 -0.41 1.28 16 22 C 0.00 0.10 5.07 -17.43 -0.09 0.02 16 23 N -0.90 -25.98 10.95 55.49 0.61 -25.37 16 24 Si 0.91 21.48 29.57 -169.99 -5.03 16.45 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 28 C 0.15 2.99 6.52 -3.71 -0.02 2.96 16 29 C -0.14 -2.29 5.55 -26.61 -0.15 -2.43 16 30 H 0.06 0.76 6.95 -51.93 -0.36 0.40 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.08 0.96 6.54 -51.92 -0.34 0.62 16 33 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.46 6.49 -51.93 -0.34 0.12 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.05 0.44 5.71 -51.93 -0.30 0.14 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.16 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.41 5.34 8.09 -40.82 -0.33 5.01 16 43 H 0.09 1.57 7.57 -51.93 -0.39 1.18 16 44 H 0.06 1.13 8.14 -51.93 -0.42 0.70 16 45 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.09 2.54 6.01 -51.93 -0.31 2.22 16 48 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 49 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 50 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 51 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 52 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 388.73 15.07 5.86 5.86 Total: -1.00 -29.20 388.73 -9.64 -38.84 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.85 Total: 5.16 kcal Atomic # 6 Polarization: 8.03 SS G_CDS: -1.16 Total: 6.88 kcal Atomic # 7 Polarization: -56.96 SS G_CDS: -0.61 Total: -57.57 kcal Atomic # 8 Polarization: -15.75 SS G_CDS: 0.14 Total: -15.62 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -29.20 -9.64 -38.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003853593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.066 kcal (2) G-P(sol) polarization free energy of solvation -29.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.639 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds