Wall clock time and date at job start Tue Mar 31 2020 21:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.70354 * 2 1 4 4 C 1.53629 * 109.66167 * 120.59219 * 2 1 3 5 5 C 1.53045 * 109.23849 * 174.55066 * 4 2 1 6 6 C 1.53039 * 109.53921 * 298.50752 * 5 4 2 7 7 C 1.53197 * 109.31081 * 61.36646 * 6 5 4 8 8 H 1.08999 * 109.70550 * 185.50797 * 7 6 5 9 9 C 1.53003 * 109.58393 * 65.14997 * 7 6 5 10 10 N 1.46919 * 108.77859 * 305.36715 * 7 6 5 11 11 C 1.34772 * 120.63176 * 233.58807 * 10 7 6 12 12 O 1.21350 * 120.00330 * 185.41997 * 11 10 7 13 13 C 1.49449 * 120.00130 * 5.41608 * 11 10 7 14 14 O 1.21350 * 119.99717 * 354.27072 * 13 11 10 15 15 N 1.34780 * 120.00405 * 174.27512 * 13 11 10 16 16 C 1.46496 * 120.00119 * 180.27814 * 15 13 11 17 17 C 1.53041 * 109.45834 * 274.79029 * 16 15 13 18 18 C 1.53200 * 109.31184 * 178.61483 * 17 16 15 19 19 N 1.46925 * 108.77504 * 54.63426 * 18 17 16 20 20 C 1.36935 * 120.63226 * 126.41093 * 19 18 17 21 21 H 1.07993 * 120.00192 * 210.46321 * 20 19 18 22 22 C 1.38813 * 119.99733 * 30.46516 * 20 19 18 23 23 N 1.31617 * 119.99939 * 10.15295 * 22 20 19 24 24 Si 1.86798 * 119.99965 * 190.15030 * 22 20 19 25 25 H 1.48505 * 109.46831 * 60.00373 * 24 22 20 26 26 H 1.48502 * 109.47064 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.47366 * 300.00494 * 24 22 20 28 28 C 1.46930 * 118.73685 * 306.39095 * 19 18 17 29 29 C 1.53036 * 109.46179 * 154.71842 * 16 15 13 30 30 H 1.09003 * 109.47446 * 174.69788 * 1 2 3 31 31 H 1.08995 * 109.47621 * 294.70191 * 1 2 3 32 32 H 1.09008 * 109.47315 * 54.70450 * 1 2 3 33 33 H 1.09000 * 109.63473 * 54.56182 * 4 2 1 34 34 H 1.08997 * 109.42826 * 294.41793 * 4 2 1 35 35 H 1.09003 * 109.45512 * 178.49274 * 5 4 2 36 36 H 1.09000 * 109.44729 * 58.52578 * 5 4 2 37 37 H 1.08997 * 109.50143 * 301.42092 * 6 5 4 38 38 H 1.08996 * 109.49983 * 181.31446 * 6 5 4 39 39 H 1.08997 * 109.47299 * 300.71415 * 9 7 6 40 40 H 1.09010 * 109.47152 * 60.71462 * 9 7 6 41 41 H 1.09002 * 109.47178 * 180.70568 * 9 7 6 42 42 H 0.96998 * 119.99561 * 359.97438 * 15 13 11 43 43 H 1.09004 * 109.45958 * 34.74828 * 16 15 13 44 44 H 1.09001 * 109.49762 * 298.56392 * 17 16 15 45 45 H 1.09001 * 109.49995 * 58.66068 * 17 16 15 46 46 H 1.08993 * 109.58235 * 294.84701 * 18 17 16 47 47 H 1.09003 * 109.58297 * 174.41619 * 18 17 16 48 48 H 0.97001 * 119.99668 * 179.97438 * 23 22 20 49 49 H 1.09003 * 109.58509 * 293.82181 * 28 19 18 50 50 H 1.09006 * 109.58298 * 173.39871 * 28 19 18 51 51 H 1.09003 * 109.49787 * 301.33515 * 29 16 15 52 52 H 1.09003 * 109.49534 * 61.43440 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0469 -0.7363 1.2454 5 6 3.5711 -0.8498 1.1677 6 6 3.9615 -1.6628 -0.0687 7 6 3.4656 -0.9420 -1.3263 8 1 3.6534 -1.5616 -2.2032 9 6 4.1985 0.3928 -1.4750 10 7 2.0226 -0.6995 -1.1945 11 6 1.1675 -1.1062 -2.1536 12 8 -0.0082 -0.8145 -2.0817 13 6 1.6672 -1.9163 -3.3057 14 8 2.8566 -2.1201 -3.4335 15 7 0.7969 -2.4205 -4.2029 16 6 1.2863 -3.2198 -5.3289 17 6 1.6953 -2.2905 -6.4740 18 6 2.2388 -3.1276 -7.6363 19 7 1.2334 -4.1336 -8.0052 20 6 0.7979 -4.2430 -9.2988 21 1 -0.2084 -4.5773 -9.5033 22 6 1.6500 -3.9243 -10.3473 23 7 2.9279 -3.7112 -10.1152 24 14 0.9829 -3.7979 -12.0875 25 1 -0.0622 -2.7443 -12.1416 26 1 2.0870 -3.4473 -13.0166 27 1 0.3934 -5.1008 -12.4876 28 6 0.7046 -5.0202 -6.9597 29 6 0.1784 -4.1620 -5.8050 30 1 -0.3634 -1.0233 -0.0950 31 1 -0.3634 0.4294 0.9336 32 1 -0.3634 0.5938 -0.8388 33 1 1.6095 -1.7337 1.2890 34 1 1.7687 -0.1771 2.1387 35 1 3.9441 -1.3480 2.0625 36 1 4.0062 0.1473 1.0990 37 1 3.5061 -2.6515 -0.0128 38 1 5.0460 -1.7630 -0.1107 39 1 4.0135 1.0088 -0.5950 40 1 5.2688 0.2108 -1.5727 41 1 3.8353 0.9097 -2.3633 42 1 -0.1538 -2.2579 -4.1005 43 1 2.1491 -3.8052 -5.0108 44 1 0.8274 -1.7226 -6.8093 45 1 2.4680 -1.6042 -6.1274 46 1 3.1584 -3.6255 -7.3292 47 1 2.4386 -2.4805 -8.4904 48 1 3.5233 -3.4889 -10.8480 49 1 1.4993 -5.6725 -6.5975 50 1 -0.1076 -5.6220 -7.3674 51 1 -0.1285 -4.8078 -4.9823 52 1 -0.6752 -3.5765 -6.1466 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001003853593.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:04:29 Heat of formation + Delta-G solvation = -45.178468 kcal Electronic energy + Delta-G solvation = -31030.989795 eV Core-core repulsion = 27031.098591 eV Total energy + Delta-G solvation = -3999.891203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.34132 -40.52877 -38.96408 -38.87379 -36.20677 -34.29634 -34.09632 -33.69568 -31.82310 -31.29792 -30.15836 -27.51175 -27.29992 -25.86550 -24.32984 -23.94641 -23.56340 -22.65501 -21.60507 -21.16706 -20.20017 -18.80454 -18.17204 -17.86715 -17.10057 -17.05626 -16.75498 -16.37141 -16.09237 -15.69008 -15.56591 -15.33727 -15.04064 -14.95857 -14.73467 -14.63915 -14.29221 -14.09053 -14.03020 -13.89479 -13.58499 -13.23720 -12.99474 -12.93795 -12.83184 -12.80039 -12.61281 -12.57216 -12.18813 -12.12861 -12.06058 -11.97932 -11.85388 -11.79462 -11.59791 -11.51531 -11.36939 -10.93023 -10.59065 -10.21134 -9.77023 -9.67071 -8.66249 -7.85926 -5.37027 0.32384 1.26370 1.48324 1.50372 1.56873 2.11111 2.40837 2.51514 3.22716 3.31535 3.67127 3.76098 3.81979 3.83343 3.94828 4.02352 4.04776 4.21276 4.28144 4.34548 4.42255 4.45810 4.51535 4.62149 4.65406 4.67675 4.78564 4.83114 4.83401 4.97312 5.00102 5.00876 5.02754 5.04661 5.10249 5.11782 5.14625 5.19146 5.23464 5.30890 5.31856 5.45010 5.48914 5.53515 5.64270 5.67772 5.73667 6.05526 6.25614 6.41644 6.76556 6.96499 7.15571 7.84773 8.37244 9.20019 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.023977 B = 0.002483 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1167.495795 B =11272.473298 C =11698.020201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.132 3.868 3 H 0.087 0.913 4 C -0.124 4.124 5 C -0.120 4.120 6 C -0.123 4.123 7 C 0.060 3.940 8 H 0.150 0.850 9 C -0.151 4.151 10 N -0.566 5.566 11 C 0.507 3.493 12 O -0.532 6.532 13 C 0.501 3.499 14 O -0.528 6.528 15 N -0.679 5.679 16 C 0.160 3.840 17 C -0.132 4.132 18 C 0.183 3.817 19 N -0.611 5.611 20 C -0.263 4.263 21 H 0.071 0.929 22 C -0.052 4.052 23 N -0.938 5.938 24 Si 0.970 3.030 25 H -0.278 1.278 26 H -0.296 1.296 27 H -0.274 1.274 28 C 0.144 3.856 29 C -0.125 4.125 30 H 0.048 0.952 31 H 0.069 0.931 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.096 0.904 35 H 0.078 0.922 36 H 0.076 0.924 37 H 0.053 0.947 38 H 0.086 0.914 39 H 0.069 0.931 40 H 0.079 0.921 41 H 0.039 0.961 42 H 0.417 0.583 43 H 0.075 0.925 44 H 0.056 0.944 45 H 0.052 0.948 46 H -0.004 1.004 47 H 0.060 0.940 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.067 0.933 51 H 0.092 0.908 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.336 7.267 25.432 26.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.031 3.969 3 H 0.105 0.895 4 C -0.162 4.162 5 C -0.157 4.157 6 C -0.161 4.161 7 C -0.041 4.041 8 H 0.166 0.834 9 C -0.209 4.209 10 N -0.298 5.298 11 C 0.289 3.711 12 O -0.410 6.410 13 C 0.283 3.717 14 O -0.408 6.408 15 N -0.330 5.330 16 C 0.056 3.944 17 C -0.173 4.173 18 C 0.057 3.943 19 N -0.335 5.335 20 C -0.393 4.393 21 H 0.089 0.911 22 C -0.247 4.247 23 N -0.584 5.584 24 Si 0.798 3.202 25 H -0.204 1.204 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.018 3.982 29 C -0.165 4.165 30 H 0.067 0.933 31 H 0.088 0.912 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.115 0.885 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.105 0.895 39 H 0.088 0.912 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.254 0.746 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.070 0.930 46 H 0.014 0.986 47 H 0.078 0.922 48 H 0.059 0.941 49 H 0.036 0.964 50 H 0.085 0.915 51 H 0.110 0.890 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.021 7.296 25.269 26.321 hybrid contribution -0.285 0.130 -1.304 1.341 sum -1.306 7.427 23.965 25.123 Atomic orbital electron populations 1.22114 0.92992 1.02439 1.01638 1.21721 0.95450 0.96088 0.83686 0.89536 1.22053 0.96464 1.00840 0.96846 1.21592 0.95116 1.01189 0.97837 1.21861 1.01846 0.98485 0.93887 1.23105 0.77289 0.99763 1.03927 0.83412 1.22049 1.00988 0.96282 1.01589 1.48272 1.08115 1.54560 1.18895 1.19960 0.86157 0.81265 0.83708 1.90800 1.17063 1.56717 1.76440 1.20624 0.86414 0.80604 0.84037 1.90275 1.16081 1.59729 1.74692 1.45991 1.11322 1.50938 1.24746 1.20908 0.97822 0.91519 0.84137 1.22353 1.00390 0.98282 0.96238 1.20510 0.89160 0.90303 0.94352 1.44319 1.47880 1.36429 1.04835 1.19515 0.95507 1.41119 0.83134 0.91148 1.25933 0.95134 1.01755 1.01882 1.70132 1.03593 1.52975 1.31701 0.85302 0.76907 0.78310 0.79657 1.20365 1.22215 1.19938 1.21026 0.96732 0.91778 0.88697 1.22184 0.97140 0.98197 0.98957 0.93324 0.91246 0.92188 0.92395 0.88540 0.90329 0.90554 0.92855 0.89525 0.91240 0.90223 0.94154 0.74551 0.90716 0.92517 0.92953 0.98618 0.92198 0.94110 0.96397 0.91466 0.89002 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.53 7.62 71.98 0.55 -1.98 16 2 C 0.13 2.24 3.09 45.12 0.14 2.38 16 3 H 0.09 1.30 7.48 -2.39 -0.02 1.28 16 4 C -0.12 -1.56 5.40 30.82 0.17 -1.40 16 5 C -0.12 -1.38 5.67 30.62 0.17 -1.21 16 6 C -0.12 -1.93 5.55 30.67 0.17 -1.76 16 7 C 0.06 1.23 3.06 44.98 0.14 1.37 16 8 H 0.15 3.92 3.69 -86.34 -0.32 3.60 16 9 C -0.15 -2.62 9.02 71.98 0.65 -1.97 16 10 N -0.57 -12.32 2.68 -772.08 -2.07 -14.39 16 11 C 0.51 13.42 7.58 87.27 0.66 14.08 16 12 O -0.53 -15.00 12.04 -3.25 -0.04 -15.04 16 13 C 0.50 14.65 7.78 87.27 0.68 15.33 16 14 O -0.53 -17.31 12.67 -3.25 -0.04 -17.35 16 15 N -0.68 -19.11 5.07 -443.74 -2.25 -21.36 16 16 C 0.16 5.28 2.42 45.02 0.11 5.39 16 17 C -0.13 -5.22 5.65 30.67 0.17 -5.04 16 18 C 0.18 9.04 5.26 86.37 0.45 9.49 16 19 N -0.61 -30.36 2.99 -699.08 -2.09 -32.45 16 20 C -0.26 -14.26 9.59 84.03 0.81 -13.45 16 21 H 0.07 3.67 7.85 -2.91 -0.02 3.64 16 22 C -0.05 -2.89 5.07 84.86 0.43 -2.46 16 23 N -0.94 -55.78 10.95 21.65 0.24 -55.54 16 24 Si 0.97 44.75 29.57 68.60 2.03 46.78 16 25 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.30 -13.80 7.11 99.48 0.71 -13.10 16 27 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 28 C 0.14 5.67 6.52 86.36 0.56 6.23 16 29 C -0.13 -3.86 5.55 30.67 0.17 -3.69 16 30 H 0.05 1.08 6.95 -2.39 -0.02 1.06 16 31 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.06 1.38 6.54 -2.38 -0.02 1.36 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.10 0.82 8.14 -2.39 -0.02 0.81 16 35 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.08 0.76 6.49 -2.39 -0.02 0.75 16 37 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.07 0.96 5.71 -2.39 -0.01 0.95 16 40 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.42 10.33 8.09 -92.71 -0.75 9.58 16 43 H 0.07 2.70 7.57 -2.38 -0.02 2.68 16 44 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 45 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 46 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 47 H 0.06 3.37 6.01 -2.39 -0.01 3.35 16 48 H 0.25 14.46 8.31 -92.71 -0.77 13.68 16 49 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 50 H 0.07 2.53 7.93 -2.38 -0.02 2.51 16 51 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 52 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 Total: -1.00 -65.00 388.73 1.67 -63.33 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -0.14 Total: 24.71 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 6.03 Total: 21.29 kcal Atomic # 7 Polarization: -117.56 SS G_CDS: -6.17 Total: -123.73 kcal Atomic # 8 Polarization: -32.30 SS G_CDS: -0.08 Total: -32.38 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 2.03 Total: 46.78 kcal Total: -65.00 1.67 -63.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001003853593.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.154 kcal (2) G-P(sol) polarization free energy of solvation -65.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds