Wall clock time and date at job start Tue Mar 31 2020 21:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49824 * 2 1 4 4 C 1.53047 * 109.49808 * 120.06613 * 2 1 3 5 5 C 1.53039 * 109.54050 * 181.34839 * 4 2 1 6 6 C 1.53191 * 109.31004 * 298.63811 * 5 4 2 7 7 N 1.46920 * 108.78029 * 54.63523 * 6 5 4 8 8 C 1.34780 * 120.63576 * 126.37061 * 7 6 5 9 9 O 1.21345 * 120.00128 * 185.00927 * 8 7 6 10 10 C 1.49455 * 119.99482 * 5.00524 * 8 7 6 11 11 O 1.21351 * 119.99602 * 274.06136 * 10 8 7 12 12 N 1.34774 * 120.00108 * 94.06378 * 10 8 7 13 13 C 1.46926 * 120.63101 * 175.23748 * 12 10 8 14 14 C 1.53189 * 108.77258 * 126.41369 * 13 12 10 15 15 C 1.53047 * 109.31115 * 54.64019 * 14 13 12 16 16 C 1.53036 * 109.53702 * 298.63356 * 15 14 13 17 17 H 1.09003 * 109.52661 * 301.39559 * 16 15 14 18 18 N 1.46499 * 109.50145 * 181.31816 * 16 15 14 19 19 C 1.46506 * 119.99461 * 299.88597 * 18 16 15 20 20 C 1.36934 * 120.00386 * 120.15763 * 18 16 15 21 21 H 1.07997 * 119.99808 * 326.74391 * 20 18 16 22 22 C 1.38811 * 120.00166 * 146.74568 * 20 18 16 23 23 N 1.31621 * 119.99978 * 3.80135 * 22 20 18 24 24 Si 1.86802 * 120.00136 * 183.80395 * 22 20 18 25 25 H 1.48494 * 109.47175 * 60.00082 * 24 22 20 26 26 H 1.48499 * 109.46917 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46812 * 299.99695 * 24 22 20 28 28 C 1.46927 * 120.62990 * 355.26931 * 12 10 8 29 29 C 1.46933 * 118.73757 * 306.64031 * 7 6 5 30 30 H 1.08997 * 109.47163 * 299.93820 * 1 2 3 31 31 H 1.08997 * 109.46770 * 59.93494 * 1 2 3 32 32 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.45689 * 61.32431 * 4 2 1 34 34 H 1.09002 * 109.45903 * 301.37088 * 4 2 1 35 35 H 1.08991 * 109.50076 * 178.68240 * 5 4 2 36 36 H 1.09008 * 109.52306 * 58.60054 * 5 4 2 37 37 H 1.09002 * 109.58543 * 294.83986 * 6 5 4 38 38 H 1.09008 * 109.70130 * 174.49429 * 6 5 4 39 39 H 1.09000 * 109.58838 * 246.20632 * 13 12 10 40 40 H 1.08999 * 109.58326 * 6.63103 * 13 12 10 41 41 H 1.09003 * 109.49790 * 174.58615 * 14 13 12 42 42 H 1.08996 * 109.50006 * 294.65755 * 14 13 12 43 43 H 1.08996 * 109.46060 * 178.61409 * 15 14 13 44 44 H 1.08998 * 109.46143 * 58.65280 * 15 14 13 45 45 H 1.08995 * 109.46849 * 274.79385 * 19 18 16 46 46 H 1.09004 * 109.47260 * 34.79847 * 19 18 16 47 47 H 1.08998 * 109.46625 * 154.79428 * 19 18 16 48 48 H 0.96996 * 120.00388 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58628 * 113.79498 * 28 12 10 50 50 H 1.09000 * 109.58640 * 353.37148 * 28 12 10 51 51 H 1.08995 * 109.58522 * 173.14403 * 29 7 6 52 52 H 1.08999 * 109.58464 * 293.57408 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 3.5708 -0.6941 1.2667 6 6 4.1059 -1.4255 0.0316 7 7 3.5053 -0.8283 -1.1689 8 6 4.2819 -0.3845 -2.1771 9 8 3.7807 0.1885 -3.1221 10 6 5.7604 -0.5982 -2.1312 11 8 6.4707 0.1979 -1.5529 12 7 6.3048 -1.6748 -2.7319 13 6 7.7632 -1.8447 -2.7854 14 6 8.1201 -3.2224 -2.2185 15 6 7.3340 -4.2985 -2.9710 16 6 5.8339 -4.0687 -2.7733 17 1 5.5982 -4.0964 -1.7095 18 7 5.0829 -5.1174 -3.4679 19 6 5.2252 -5.2830 -4.9166 20 6 4.2436 -5.9391 -2.7640 21 1 4.4854 -6.2159 -1.7485 22 6 3.0822 -6.4164 -3.3557 23 7 2.8248 -6.1407 -4.6167 24 14 1.8845 -7.4500 -2.3623 25 1 1.3981 -6.6640 -1.2001 26 1 0.7325 -7.8319 -3.2179 27 1 2.5706 -8.6751 -1.8792 28 6 5.4510 -2.7006 -3.3464 29 6 2.0422 -0.7186 -1.2470 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6971 -1.7571 1.2355 34 1 1.6577 -0.2243 2.1390 35 1 3.9334 -1.1884 2.1678 36 1 3.9159 0.3399 1.2550 37 1 3.8387 -2.4808 0.0876 38 1 5.1904 -1.3252 -0.0138 39 1 8.1014 -1.7761 -3.8193 40 1 8.2435 -1.0687 -2.1894 41 1 9.1886 -3.4003 -2.3405 42 1 7.8639 -3.2576 -1.1597 43 1 7.6045 -5.2817 -2.5862 44 1 7.5724 -4.2463 -4.0333 45 1 4.5426 -4.6048 -5.4286 46 1 6.2504 -5.0561 -5.2093 47 1 4.9885 -6.3113 -5.1896 48 1 2.0130 -6.4739 -5.0301 49 1 5.6008 -2.7018 -4.4261 50 1 4.4058 -2.4893 -3.1207 51 1 1.7653 -0.1497 -2.1345 52 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027605345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:18 Heat of formation + Delta-G solvation = -52.319196 kcal Electronic energy + Delta-G solvation = -32131.750074 eV Core-core repulsion = 28131.549225 eV Total energy + Delta-G solvation = -4000.200849 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.91749 -39.23742 -37.76758 -37.29729 -35.01701 -33.93314 -32.54757 -31.96207 -31.50512 -28.86815 -27.47644 -26.33168 -26.06639 -25.17180 -23.65927 -22.92324 -22.42162 -21.24901 -20.16381 -19.39648 -18.55229 -17.60473 -16.85579 -16.77274 -16.30219 -15.34034 -15.15414 -14.82357 -14.65912 -14.62679 -14.39405 -14.15809 -13.89762 -13.66469 -13.56792 -13.47385 -13.04121 -12.76789 -12.68164 -12.67385 -12.33667 -12.14273 -12.03232 -11.90319 -11.38440 -11.23153 -11.16422 -11.05149 -10.95514 -10.88858 -10.82080 -10.62689 -10.51002 -10.48385 -10.43552 -10.33618 -10.00310 -9.86394 -9.35251 -8.71071 -8.64099 -8.49170 -6.73210 -5.87554 -3.40173 2.23198 2.30620 2.76139 3.29558 3.35569 3.36820 3.42829 4.23555 4.40380 4.56780 4.68409 4.70336 4.87211 5.06582 5.14993 5.16119 5.17681 5.29461 5.33699 5.39456 5.46937 5.50900 5.57231 5.58666 5.59924 5.61907 5.70300 5.77139 5.83151 5.85581 5.95831 5.96504 5.99290 6.04272 6.05449 6.12595 6.24653 6.26824 6.31509 6.40101 6.57009 6.70558 6.79640 6.86440 7.19309 7.32161 7.35508 7.65739 7.72299 7.91662 7.97597 8.36691 9.14450 9.72798 10.27495 11.18243 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.005497 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.633092 B = 5092.205038 C = 7296.205799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.073 0.927 4 C -0.116 4.116 5 C -0.132 4.132 6 C 0.104 3.896 7 N -0.593 5.593 8 C 0.523 3.477 9 O -0.517 6.517 10 C 0.517 3.483 11 O -0.532 6.532 12 N -0.586 5.586 13 C 0.110 3.890 14 C -0.129 4.129 15 C -0.135 4.135 16 C 0.171 3.829 17 H 0.066 0.934 18 N -0.589 5.589 19 C 0.159 3.841 20 C -0.265 4.265 21 H 0.065 0.935 22 C 0.016 3.984 23 N -0.899 5.899 24 Si 0.901 3.099 25 H -0.282 1.282 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.090 3.910 29 C 0.113 3.887 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.065 0.935 35 H 0.078 0.922 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.083 0.917 39 H 0.070 0.930 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.061 0.939 45 H 0.016 0.984 46 H -0.006 1.006 47 H 0.060 0.940 48 H 0.256 0.744 49 H 0.071 0.929 50 H 0.079 0.921 51 H 0.094 0.906 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.697 8.628 9.412 13.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.153 4.153 5 C -0.170 4.170 6 C -0.019 4.019 7 N -0.327 5.327 8 C 0.306 3.694 9 O -0.392 6.392 10 C 0.299 3.701 11 O -0.409 6.409 12 N -0.320 5.320 13 C -0.012 4.012 14 C -0.167 4.167 15 C -0.174 4.174 16 C 0.061 3.939 17 H 0.084 0.916 18 N -0.311 5.311 19 C 0.015 3.985 20 C -0.394 4.394 21 H 0.082 0.918 22 C -0.184 4.184 23 N -0.542 5.542 24 Si 0.730 3.270 25 H -0.208 1.208 26 H -0.215 1.215 27 H -0.209 1.209 28 C -0.034 4.034 29 C -0.008 4.008 30 H 0.076 0.924 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.097 0.903 36 H 0.086 0.914 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.088 0.912 40 H 0.108 0.892 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.079 0.921 45 H 0.035 0.965 46 H 0.013 0.987 47 H 0.078 0.922 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.098 0.902 51 H 0.112 0.888 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.642 9.255 9.036 13.202 hybrid contribution -0.823 -0.598 0.330 1.069 sum 1.819 8.657 9.366 12.884 Atomic orbital electron populations 1.21756 0.94179 1.02348 1.01967 1.21428 0.96115 1.00087 0.94939 0.90834 1.21611 0.95046 1.01216 0.97458 1.21888 0.96218 1.01447 0.97493 1.21849 0.98354 0.97936 0.83759 1.48022 1.07011 1.59536 1.18159 1.20234 0.87411 0.78990 0.82808 1.90776 1.73565 1.41235 1.33611 1.20184 0.88658 0.81933 0.79309 1.90748 1.61635 1.44750 1.43784 1.48354 1.07956 1.20884 1.54788 1.21712 0.79217 0.98466 1.01764 1.21894 1.00140 0.94220 1.00486 1.22090 0.97017 0.98112 1.00217 1.20659 0.90496 0.86213 0.96499 0.91582 1.43827 1.50257 1.32793 1.04230 1.20837 0.93156 1.01361 0.83151 1.19055 0.99212 1.23162 0.97981 0.91778 1.25329 0.96887 0.99868 0.96316 1.70008 1.26032 1.47556 1.10614 0.86416 0.80998 0.80056 0.79550 1.20797 1.21533 1.20853 1.22809 0.93878 0.88341 0.98355 1.21710 0.78239 1.01753 0.99145 0.92369 0.92322 0.92179 0.91268 0.91579 0.90342 0.91364 0.90004 0.89877 0.91182 0.89162 0.90944 0.91665 0.91498 0.92071 0.96522 0.98748 0.92158 0.93383 0.91099 0.90232 0.88780 0.90357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.20 37.16 0.34 -0.97 16 2 C -0.11 -1.14 2.86 -90.72 -0.26 -1.40 16 3 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.12 -1.11 5.17 -26.69 -0.14 -1.25 16 5 C -0.13 -1.35 6.08 -26.61 -0.16 -1.51 16 6 C 0.10 1.32 6.33 -3.71 -0.02 1.30 16 7 N -0.59 -8.95 2.98 -173.53 -0.52 -9.47 16 8 C 0.52 9.43 5.49 -11.58 -0.06 9.36 16 9 O -0.52 -10.69 16.51 5.50 0.09 -10.60 16 10 C 0.52 9.13 5.59 -11.58 -0.06 9.07 16 11 O -0.53 -10.08 16.34 5.50 0.09 -9.99 16 12 N -0.59 -9.58 2.97 -173.28 -0.51 -10.10 16 13 C 0.11 1.51 6.44 -3.71 -0.02 1.48 16 14 C -0.13 -1.63 6.08 -26.61 -0.16 -1.79 16 15 C -0.13 -2.11 5.11 -26.69 -0.14 -2.25 16 16 C 0.17 3.21 2.75 -67.81 -0.19 3.02 16 17 H 0.07 1.27 7.89 -51.93 -0.41 0.86 16 18 N -0.59 -13.64 2.80 -173.35 -0.49 -14.13 16 19 C 0.16 3.70 7.96 59.85 0.48 4.17 16 20 C -0.26 -6.75 9.48 -15.06 -0.14 -6.90 16 21 H 0.06 1.60 7.83 -52.49 -0.41 1.19 16 22 C 0.02 0.42 5.32 -17.43 -0.09 0.33 16 23 N -0.90 -24.87 10.63 55.49 0.59 -24.28 16 24 Si 0.90 20.61 29.56 -169.99 -5.02 15.59 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 C 0.09 1.65 5.68 -3.71 -0.02 1.63 16 29 C 0.11 1.54 5.70 -3.93 -0.02 1.52 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 37 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 38 H 0.08 1.12 6.25 -51.92 -0.32 0.79 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 1.22 7.00 -51.93 -0.36 0.85 16 41 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.97 6.75 -51.93 -0.35 0.62 16 45 H 0.02 0.41 7.79 -51.93 -0.40 0.01 16 46 H -0.01 -0.12 6.48 -51.93 -0.34 -0.46 16 47 H 0.06 1.54 6.92 -51.93 -0.36 1.18 16 48 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 49 H 0.07 1.35 7.51 -51.93 -0.39 0.96 16 50 H 0.08 1.62 6.37 -51.93 -0.33 1.28 16 51 H 0.09 1.39 7.00 -51.93 -0.36 1.03 16 52 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 398.41 15.07 6.00 6.00 Total: -1.00 -30.23 398.41 -9.54 -39.77 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -9.10 Total: 1.39 kcal Atomic # 6 Polarization: 16.50 SS G_CDS: -0.68 Total: 15.82 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: -0.93 Total: -57.98 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: 0.18 Total: -20.60 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.23 -9.54 -39.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027605345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.547 kcal (2) G-P(sol) polarization free energy of solvation -30.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds