Wall clock time and date at job start Tue Mar 31 2020 21:52:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08996 * 109.49824 * 2 1 4 4 C 1.53047 * 109.49808 * 120.06613 * 2 1 3 5 5 C 1.53039 * 109.54050 * 181.34839 * 4 2 1 6 6 C 1.53191 * 109.31004 * 298.63811 * 5 4 2 7 7 N 1.46920 * 108.78029 * 54.63523 * 6 5 4 8 8 C 1.34780 * 120.63576 * 126.37061 * 7 6 5 9 9 O 1.21345 * 120.00128 * 185.00927 * 8 7 6 10 10 C 1.49455 * 119.99482 * 5.00524 * 8 7 6 11 11 O 1.21351 * 119.99602 * 274.06136 * 10 8 7 12 12 N 1.34774 * 120.00108 * 94.06378 * 10 8 7 13 13 C 1.46926 * 120.63101 * 175.23748 * 12 10 8 14 14 C 1.53189 * 108.77258 * 126.41369 * 13 12 10 15 15 C 1.53047 * 109.31115 * 54.64019 * 14 13 12 16 16 C 1.53036 * 109.53702 * 298.63356 * 15 14 13 17 17 H 1.09003 * 109.52661 * 301.39559 * 16 15 14 18 18 N 1.46499 * 109.50145 * 181.31816 * 16 15 14 19 19 C 1.46506 * 119.99461 * 299.88597 * 18 16 15 20 20 C 1.36934 * 120.00386 * 120.15763 * 18 16 15 21 21 H 1.07997 * 119.99808 * 326.74391 * 20 18 16 22 22 C 1.38811 * 120.00166 * 146.74568 * 20 18 16 23 23 N 1.31621 * 119.99978 * 3.80135 * 22 20 18 24 24 Si 1.86802 * 120.00136 * 183.80395 * 22 20 18 25 25 H 1.48494 * 109.47175 * 60.00082 * 24 22 20 26 26 H 1.48499 * 109.46917 * 179.97438 * 24 22 20 27 27 H 1.48497 * 109.46812 * 299.99695 * 24 22 20 28 28 C 1.46927 * 120.62990 * 355.26931 * 12 10 8 29 29 C 1.46933 * 118.73757 * 306.64031 * 7 6 5 30 30 H 1.08997 * 109.47163 * 299.93820 * 1 2 3 31 31 H 1.08997 * 109.46770 * 59.93494 * 1 2 3 32 32 H 1.08996 * 109.47251 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.45689 * 61.32431 * 4 2 1 34 34 H 1.09002 * 109.45903 * 301.37088 * 4 2 1 35 35 H 1.08991 * 109.50076 * 178.68240 * 5 4 2 36 36 H 1.09008 * 109.52306 * 58.60054 * 5 4 2 37 37 H 1.09002 * 109.58543 * 294.83986 * 6 5 4 38 38 H 1.09008 * 109.70130 * 174.49429 * 6 5 4 39 39 H 1.09000 * 109.58838 * 246.20632 * 13 12 10 40 40 H 1.08999 * 109.58326 * 6.63103 * 13 12 10 41 41 H 1.09003 * 109.49790 * 174.58615 * 14 13 12 42 42 H 1.08996 * 109.50006 * 294.65755 * 14 13 12 43 43 H 1.08996 * 109.46060 * 178.61409 * 15 14 13 44 44 H 1.08998 * 109.46143 * 58.65280 * 15 14 13 45 45 H 1.08995 * 109.46849 * 274.79385 * 19 18 16 46 46 H 1.09004 * 109.47260 * 34.79847 * 19 18 16 47 47 H 1.08998 * 109.46625 * 154.79428 * 19 18 16 48 48 H 0.96996 * 120.00388 * 180.02562 * 23 22 20 49 49 H 1.08996 * 109.58628 * 113.79498 * 28 12 10 50 50 H 1.09000 * 109.58640 * 353.37148 * 28 12 10 51 51 H 1.08995 * 109.58522 * 173.14403 * 29 7 6 52 52 H 1.08999 * 109.58464 * 293.57408 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0408 -0.7228 1.2486 5 6 3.5708 -0.6941 1.2667 6 6 4.1059 -1.4255 0.0316 7 7 3.5053 -0.8283 -1.1689 8 6 4.2819 -0.3845 -2.1771 9 8 3.7807 0.1885 -3.1221 10 6 5.7604 -0.5982 -2.1312 11 8 6.4707 0.1979 -1.5529 12 7 6.3048 -1.6748 -2.7319 13 6 7.7632 -1.8447 -2.7854 14 6 8.1201 -3.2224 -2.2185 15 6 7.3340 -4.2985 -2.9710 16 6 5.8339 -4.0687 -2.7733 17 1 5.5982 -4.0964 -1.7095 18 7 5.0829 -5.1174 -3.4679 19 6 5.2252 -5.2830 -4.9166 20 6 4.2436 -5.9391 -2.7640 21 1 4.4854 -6.2159 -1.7485 22 6 3.0822 -6.4164 -3.3557 23 7 2.8248 -6.1407 -4.6167 24 14 1.8845 -7.4500 -2.3623 25 1 1.3981 -6.6640 -1.2001 26 1 0.7325 -7.8319 -3.2179 27 1 2.5706 -8.6751 -1.8792 28 6 5.4510 -2.7006 -3.3464 29 6 2.0422 -0.7186 -1.2470 30 1 -0.3633 0.5129 0.8905 31 1 -0.3633 0.5148 -0.8894 32 1 -0.3633 -1.0276 -0.0005 33 1 1.6971 -1.7571 1.2355 34 1 1.6577 -0.2243 2.1390 35 1 3.9334 -1.1884 2.1678 36 1 3.9159 0.3399 1.2550 37 1 3.8387 -2.4808 0.0876 38 1 5.1904 -1.3252 -0.0138 39 1 8.1014 -1.7761 -3.8193 40 1 8.2435 -1.0687 -2.1894 41 1 9.1886 -3.4003 -2.3405 42 1 7.8639 -3.2576 -1.1597 43 1 7.6045 -5.2817 -2.5862 44 1 7.5724 -4.2463 -4.0333 45 1 4.5426 -4.6048 -5.4286 46 1 6.2504 -5.0561 -5.2093 47 1 4.9885 -6.3113 -5.1896 48 1 2.0130 -6.4739 -5.0301 49 1 5.6008 -2.7018 -4.4261 50 1 4.4058 -2.4893 -3.1207 51 1 1.7653 -0.1497 -2.1345 52 1 1.6032 -1.7150 -1.2973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027605345.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:52:17 Heat of formation + Delta-G solvation = -69.506304 kcal Electronic energy + Delta-G solvation = -32132.495363 eV Core-core repulsion = 28131.549225 eV Total energy + Delta-G solvation = -4000.946138 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.26741 -40.50278 -39.10909 -38.68161 -36.70504 -35.01126 -34.02239 -33.13296 -32.93169 -30.49603 -28.61203 -28.00984 -27.37549 -26.40749 -25.31530 -24.24511 -23.35957 -22.60484 -21.31789 -20.72680 -19.84262 -19.01208 -18.61656 -18.22130 -17.67920 -16.97857 -16.36549 -16.09617 -16.04954 -15.72441 -15.63656 -15.38364 -15.29714 -15.13501 -14.91340 -14.55915 -14.43319 -14.18056 -14.10873 -13.78354 -13.61303 -13.58340 -13.08662 -13.04091 -12.83412 -12.73410 -12.64792 -12.52853 -12.22827 -12.19786 -12.12556 -12.09003 -11.88897 -11.80573 -11.69209 -11.61745 -11.43284 -11.37596 -10.76790 -10.57382 -9.94459 -9.91702 -8.63492 -7.86769 -5.41195 0.87250 0.90528 1.40977 1.48291 1.48769 1.55543 2.10817 2.50040 2.92936 3.31419 3.63236 3.67039 3.77365 3.80306 3.81189 3.94923 3.98847 4.09017 4.18628 4.20367 4.29253 4.33169 4.44800 4.50897 4.58394 4.60989 4.70340 4.71442 4.75736 4.81030 4.82145 4.87029 4.93929 5.00517 5.02168 5.09567 5.10848 5.18496 5.22918 5.28561 5.31694 5.33130 5.39703 5.45533 5.54107 5.66067 5.72989 5.92432 5.93557 6.39300 6.55521 6.59156 7.17171 7.83998 8.33418 9.17558 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008280 B = 0.005497 C = 0.003837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3380.633092 B = 5092.205038 C = 7296.205799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.100 4.100 3 H 0.067 0.933 4 C -0.112 4.112 5 C -0.126 4.126 6 C 0.098 3.902 7 N -0.587 5.587 8 C 0.512 3.488 9 O -0.557 6.557 10 C 0.519 3.481 11 O -0.545 6.545 12 N -0.580 5.580 13 C 0.105 3.895 14 C -0.115 4.115 15 C -0.126 4.126 16 C 0.172 3.828 17 H 0.062 0.938 18 N -0.604 5.604 19 C 0.176 3.824 20 C -0.267 4.267 21 H 0.070 0.930 22 C -0.037 4.037 23 N -0.932 5.932 24 Si 0.960 3.040 25 H -0.272 1.272 26 H -0.298 1.298 27 H -0.276 1.276 28 C 0.107 3.893 29 C 0.108 3.892 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.060 0.940 33 H 0.070 0.930 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.063 0.937 37 H 0.083 0.917 38 H 0.076 0.924 39 H 0.085 0.915 40 H 0.098 0.902 41 H 0.107 0.893 42 H 0.068 0.932 43 H 0.065 0.935 44 H 0.061 0.939 45 H -0.011 1.011 46 H 0.025 0.975 47 H 0.031 0.969 48 H 0.249 0.751 49 H 0.062 0.938 50 H 0.053 0.947 51 H 0.074 0.926 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.809 8.571 11.917 15.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.119 4.119 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.164 4.164 6 C -0.023 4.023 7 N -0.320 5.320 8 C 0.295 3.705 9 O -0.435 6.435 10 C 0.302 3.698 11 O -0.423 6.423 12 N -0.313 5.313 13 C -0.016 4.016 14 C -0.154 4.154 15 C -0.165 4.165 16 C 0.064 3.936 17 H 0.081 0.919 18 N -0.327 5.327 19 C 0.032 3.968 20 C -0.397 4.397 21 H 0.087 0.913 22 C -0.234 4.234 23 N -0.577 5.577 24 Si 0.788 3.212 25 H -0.198 1.198 26 H -0.225 1.225 27 H -0.202 1.202 28 C -0.018 4.018 29 C -0.013 4.013 30 H 0.096 0.904 31 H 0.073 0.927 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.122 0.878 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.116 0.884 41 H 0.126 0.874 42 H 0.087 0.913 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.007 0.993 46 H 0.043 0.957 47 H 0.050 0.950 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.072 0.928 51 H 0.093 0.907 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 3.788 9.191 11.603 15.279 hybrid contribution -1.113 -0.576 -0.440 1.328 sum 2.675 8.615 11.163 14.352 Atomic orbital electron populations 1.21739 0.92732 1.02639 1.02751 1.21393 0.97229 0.99353 0.93914 0.91419 1.21620 0.94463 1.01376 0.97509 1.21883 0.96674 1.00964 0.96837 1.22057 0.98062 0.98289 0.83921 1.48211 1.07580 1.58123 1.18059 1.20472 0.87980 0.79064 0.83017 1.90744 1.74265 1.43338 1.35146 1.20102 0.88408 0.82038 0.79258 1.90732 1.61854 1.45179 1.44523 1.48329 1.09074 1.19939 1.53980 1.22009 0.77092 0.99450 1.03045 1.21836 1.01602 0.92007 0.99942 1.21954 0.94464 0.99244 1.00812 1.20777 0.92134 0.85050 0.95667 0.91947 1.44005 1.50566 1.33945 1.04151 1.20531 0.94090 0.98828 0.83395 1.19371 0.99256 1.22980 0.98084 0.91263 1.26014 0.98573 1.01658 0.97121 1.70181 1.26164 1.49270 1.12044 0.85462 0.78658 0.78856 0.78211 1.19792 1.22489 1.20154 1.22407 0.92893 0.88744 0.97737 1.21845 0.77491 1.01712 1.00263 0.90442 0.92724 0.92107 0.91121 0.89220 0.87840 0.91861 0.89889 0.90518 0.89728 0.88396 0.87444 0.91316 0.91641 0.92013 0.99255 0.95652 0.95011 0.94175 0.91987 0.92808 0.90714 0.90670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.20 71.98 0.66 -1.70 16 2 C -0.10 -2.04 2.86 -10.86 -0.03 -2.07 16 3 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 4 C -0.11 -1.89 5.17 30.62 0.16 -1.73 16 5 C -0.13 -2.30 6.08 30.67 0.19 -2.11 16 6 C 0.10 2.44 6.33 86.36 0.55 2.98 16 7 N -0.59 -18.03 2.98 -821.30 -2.45 -20.47 16 8 C 0.51 19.01 5.49 87.27 0.48 19.49 16 9 O -0.56 -24.15 16.51 -3.23 -0.05 -24.20 16 10 C 0.52 18.32 5.59 87.27 0.49 18.81 16 11 O -0.54 -20.27 16.34 -3.25 -0.05 -20.32 16 12 N -0.58 -18.53 2.97 -820.48 -2.44 -20.97 16 13 C 0.10 2.59 6.44 86.36 0.56 3.14 16 14 C -0.12 -2.52 6.08 30.67 0.19 -2.33 16 15 C -0.13 -3.63 5.11 30.62 0.16 -3.47 16 16 C 0.17 6.33 2.75 45.07 0.12 6.45 16 17 H 0.06 2.34 7.89 -2.39 -0.02 2.32 16 18 N -0.60 -28.06 2.80 -702.34 -1.97 -30.03 16 19 C 0.18 8.31 7.96 127.77 1.02 9.33 16 20 C -0.27 -13.63 9.48 84.03 0.80 -12.84 16 21 H 0.07 3.41 7.83 -2.91 -0.02 3.39 16 22 C -0.04 -1.98 5.32 84.86 0.45 -1.53 16 23 N -0.93 -53.06 10.63 21.65 0.23 -52.83 16 24 Si 0.96 42.56 29.56 68.60 2.03 44.58 16 25 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 26 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 27 H -0.28 -11.82 7.11 99.48 0.71 -11.12 16 28 C 0.11 3.94 5.68 86.36 0.49 4.43 16 29 C 0.11 3.02 5.70 86.22 0.49 3.51 16 30 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 31 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 32 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.20 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.06 1.25 8.14 -2.38 -0.02 1.23 16 37 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 38 H 0.08 2.00 6.25 -2.38 -0.01 1.98 16 39 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 40 H 0.10 2.36 7.00 -2.39 -0.02 2.35 16 41 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 44 H 0.06 1.80 6.75 -2.39 -0.02 1.78 16 45 H -0.01 -0.57 7.79 -2.39 -0.02 -0.59 16 46 H 0.03 1.02 6.48 -2.38 -0.02 1.00 16 47 H 0.03 1.65 6.92 -2.39 -0.02 1.63 16 48 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 49 H 0.06 2.40 7.51 -2.39 -0.02 2.38 16 50 H 0.05 2.26 6.37 -2.39 -0.02 2.25 16 51 H 0.07 2.36 7.00 -2.39 -0.02 2.34 16 52 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -67.17 398.41 2.94 -64.22 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: 0.89 Total: 19.67 kcal Atomic # 6 Polarization: 33.60 SS G_CDS: 6.76 Total: 40.36 kcal Atomic # 7 Polarization: -117.68 SS G_CDS: -6.62 Total: -124.30 kcal Atomic # 8 Polarization: -44.42 SS G_CDS: -0.11 Total: -44.53 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.58 kcal Total: -67.17 2.94 -64.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027605345.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.283 kcal (2) G-P(sol) polarization free energy of solvation -67.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds