Wall clock time and date at job start Tue Mar 31 2020 21:59:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.52153 * 2 1 4 4 C 1.53040 * 109.50044 * 239.91782 * 2 1 3 5 5 C 1.53042 * 109.53799 * 178.68162 * 4 2 1 6 6 C 1.52759 * 109.38223 * 61.23804 * 5 4 2 7 7 N 1.46920 * 109.01162 * 305.58593 * 6 5 4 8 8 C 1.34779 * 120.63179 * 233.58684 * 7 6 5 9 9 O 1.21351 * 119.99766 * 186.20513 * 8 7 6 10 10 C 1.49443 * 119.99849 * 6.20590 * 8 7 6 11 11 O 1.21349 * 120.00518 * 6.25406 * 10 8 7 12 12 N 1.34776 * 119.99999 * 186.25428 * 10 8 7 13 13 C 1.46500 * 120.00332 * 180.02562 * 12 10 8 14 14 H 1.08999 * 109.36504 * 34.74116 * 13 12 10 15 15 C 1.50880 * 109.26748 * 154.42793 * 13 12 10 16 16 C 1.52573 * 109.35837 * 212.01284 * 15 13 12 17 17 C 1.47088 * 114.32313 * 274.98589 * 16 15 13 18 18 C 1.54864 * 110.32760 * 62.80508 * 17 16 15 19 19 N 1.44580 * 109.59578 * 288.73217 * 18 17 16 20 20 C 1.36927 * 118.64249 * 270.69819 * 19 18 17 21 21 H 1.08002 * 120.00267 * 134.70053 * 20 19 18 22 22 C 1.38812 * 120.00414 * 314.70402 * 20 19 18 23 23 N 1.31618 * 120.00299 * 173.99531 * 22 20 19 24 24 Si 1.86798 * 119.99913 * 353.99888 * 22 20 19 25 25 H 1.48497 * 109.47512 * 94.92165 * 24 22 20 26 26 H 1.48500 * 109.47300 * 214.92567 * 24 22 20 27 27 H 1.48507 * 109.47050 * 334.92374 * 24 22 20 28 28 C 1.47602 * 122.71191 * 90.72623 * 19 18 17 29 29 C 1.46929 * 118.73506 * 53.30912 * 7 6 5 30 30 H 1.09007 * 109.47549 * 299.91842 * 1 2 3 31 31 H 1.09002 * 109.47772 * 59.92538 * 1 2 3 32 32 H 1.09005 * 109.47107 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45833 * 298.69985 * 4 2 1 34 34 H 1.08999 * 109.45987 * 58.65710 * 4 2 1 35 35 H 1.08997 * 109.49256 * 181.31401 * 5 4 2 36 36 H 1.09000 * 109.49720 * 301.40973 * 5 4 2 37 37 H 1.08998 * 109.50528 * 185.70356 * 6 5 4 38 38 H 1.09007 * 109.43188 * 65.42714 * 6 5 4 39 39 H 0.96999 * 120.00253 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.49233 * 92.04286 * 15 13 12 41 41 H 1.09003 * 109.48568 * 331.97689 * 15 13 12 42 42 H 1.09005 * 108.50978 * 153.73068 * 16 15 13 43 43 H 1.08999 * 108.51417 * 36.24149 * 16 15 13 44 44 H 1.09004 * 109.32297 * 183.06703 * 17 16 15 45 45 H 1.08997 * 109.32950 * 302.53947 * 17 16 15 46 46 H 1.09007 * 109.44599 * 48.76622 * 18 17 16 47 47 H 1.08998 * 109.45041 * 168.71679 * 18 17 16 48 48 H 0.97001 * 119.99946 * 180.02562 * 23 22 20 49 49 H 1.09000 * 108.95325 * 78.55299 * 28 19 18 50 50 H 1.09000 * 108.94422 * 197.26816 * 28 19 18 51 51 H 1.09001 * 109.58497 * 66.43988 * 29 7 6 52 52 H 1.09002 * 109.58285 * 186.85715 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6950 -1.2659 6 6 4.1055 -1.4214 -0.0330 7 7 3.5046 -0.8289 1.1696 8 6 4.2811 -0.3853 2.1780 9 8 3.7734 -0.0022 3.2114 10 6 5.7674 -0.3651 2.0232 11 8 6.2699 -0.6396 0.9533 12 7 6.5498 -0.0420 3.0720 13 6 8.0068 -0.0217 2.9202 14 1 8.2609 0.3206 1.9170 15 6 8.6001 0.9226 3.9364 16 6 9.8571 1.5645 3.3570 17 6 11.0788 0.7626 3.5238 18 6 10.9489 -0.5802 2.7635 19 7 10.0037 -1.4348 3.4466 20 6 10.4652 -2.2723 4.4267 21 1 9.9345 -2.3508 5.3640 22 6 11.6153 -3.0204 4.2156 23 7 12.1253 -3.7343 5.1968 24 14 12.4391 -3.0140 2.5392 25 1 13.5217 -1.9977 2.5234 26 1 13.0151 -4.3551 2.2655 27 1 11.4353 -2.6841 1.4956 28 6 8.5619 -1.4421 3.1307 29 6 2.0413 -0.7237 1.2496 30 1 -0.3634 0.5126 0.8907 31 1 -0.3635 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6968 -1.7573 -1.2352 34 1 1.6581 -0.2246 -2.1389 35 1 3.9334 -1.1897 -2.1669 36 1 3.9159 0.3389 -1.2541 37 1 5.1895 -1.3157 0.0101 38 1 3.8413 -2.4774 -0.0913 39 1 6.1483 0.1777 3.9271 40 1 8.8574 0.3698 4.8399 41 1 7.8741 1.6987 4.1789 42 1 10.0076 2.5295 3.8411 43 1 9.6986 1.7365 2.2923 44 1 11.9311 1.3180 3.1322 45 1 11.2376 0.5633 4.5836 46 1 10.5991 -0.3904 1.7487 47 1 11.9211 -1.0718 2.7263 48 1 12.9292 -4.2567 5.0494 49 1 8.4014 -2.0231 2.2225 50 1 8.0221 -1.9136 3.9519 51 1 1.6053 -1.7215 1.2982 52 1 1.7637 -0.1577 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034430758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:48 Heat of formation + Delta-G solvation = -35.990161 kcal Electronic energy + Delta-G solvation = -30878.294052 eV Core-core repulsion = 26878.801284 eV Total energy + Delta-G solvation = -3999.492769 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.09485 -39.33964 -38.02321 -37.80982 -35.12832 -33.89160 -33.41607 -32.12572 -31.37049 -30.52317 -27.54932 -26.50794 -26.12715 -24.89892 -23.77807 -22.57569 -22.36563 -20.85761 -20.34589 -19.67419 -19.50725 -17.63934 -17.12072 -16.62772 -16.16955 -15.95300 -15.60885 -15.43896 -15.12629 -14.76521 -14.58632 -14.29087 -14.22707 -13.89400 -13.54488 -13.25518 -13.22242 -13.03010 -12.92425 -12.91027 -12.50889 -12.23853 -12.09523 -11.79880 -11.66489 -11.54215 -11.37406 -11.25053 -11.17532 -10.96605 -10.80996 -10.69264 -10.51881 -10.35002 -10.20425 -10.11517 -9.70708 -9.38454 -9.10074 -9.08714 -8.89644 -8.56380 -6.72658 -5.96279 -3.55316 1.36623 2.25816 3.16366 3.30474 3.41564 3.46064 3.50499 4.23239 4.41231 4.45056 4.49912 4.56410 4.79962 4.94414 5.02798 5.11718 5.18173 5.19260 5.21030 5.28102 5.32093 5.38064 5.42814 5.44333 5.49515 5.64721 5.67052 5.70216 5.72659 5.76514 5.80466 5.84767 5.93321 6.08322 6.12943 6.17544 6.20257 6.32973 6.36237 6.51910 6.58115 6.59648 6.67209 6.77320 6.79938 6.95634 7.05450 7.28046 7.70481 8.01093 8.14124 8.39841 9.01173 9.68740 10.07113 11.17107 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002728 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.064407 B =10262.871813 C =10664.074155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.107 4.107 3 H 0.074 0.926 4 C -0.118 4.118 5 C -0.130 4.130 6 C 0.044 3.956 7 N -0.581 5.581 8 C 0.509 3.491 9 O -0.525 6.525 10 C 0.509 3.491 11 O -0.510 6.510 12 N -0.683 5.683 13 C 0.125 3.875 14 H 0.087 0.913 15 C -0.118 4.118 16 C -0.098 4.098 17 C -0.146 4.146 18 C 0.147 3.853 19 N -0.601 5.601 20 C -0.274 4.274 21 H 0.077 0.923 22 C 0.036 3.964 23 N -0.909 5.909 24 Si 0.900 3.100 25 H -0.287 1.287 26 H -0.305 1.305 27 H -0.269 1.269 28 C 0.145 3.855 29 C 0.112 3.888 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.065 0.935 37 H 0.162 0.838 38 H 0.063 0.937 39 H 0.411 0.589 40 H 0.086 0.914 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.049 0.951 44 H 0.050 0.950 45 H 0.071 0.929 46 H 0.038 0.962 47 H 0.044 0.956 48 H 0.263 0.737 49 H 0.027 0.973 50 H 0.061 0.939 51 H 0.071 0.929 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.439 9.602 -11.247 24.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 H 0.092 0.908 4 C -0.155 4.155 5 C -0.168 4.168 6 C -0.077 4.077 7 N -0.314 5.314 8 C 0.292 3.708 9 O -0.401 6.401 10 C 0.290 3.710 11 O -0.388 6.388 12 N -0.334 5.334 13 C 0.020 3.980 14 H 0.105 0.895 15 C -0.156 4.156 16 C -0.136 4.136 17 C -0.187 4.187 18 C 0.021 3.979 19 N -0.325 5.325 20 C -0.403 4.403 21 H 0.094 0.906 22 C -0.165 4.165 23 N -0.550 5.550 24 Si 0.733 3.267 25 H -0.215 1.215 26 H -0.234 1.234 27 H -0.194 1.194 28 C 0.019 3.981 29 C -0.011 4.011 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.178 0.822 38 H 0.081 0.919 39 H 0.248 0.752 40 H 0.104 0.896 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.068 0.932 44 H 0.069 0.931 45 H 0.090 0.910 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.073 0.927 49 H 0.045 0.955 50 H 0.080 0.920 51 H 0.089 0.911 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -19.217 9.482 -11.392 24.269 hybrid contribution 0.250 -0.002 -0.522 0.579 sum -18.967 9.480 -11.914 24.322 Atomic orbital electron populations 1.21765 0.94236 1.02139 1.02112 1.21504 0.95990 1.00145 0.94944 0.90768 1.21644 0.95893 1.00697 0.97282 1.21776 0.95260 1.01614 0.98163 1.23256 1.05786 0.96136 0.82475 1.47942 1.06497 1.58621 1.18301 1.20170 0.88103 0.78746 0.83774 1.90742 1.75134 1.47142 1.27122 1.20073 0.87619 0.78412 0.84910 1.90290 1.74497 1.48179 1.25850 1.46074 1.07585 1.66378 1.13348 1.21732 0.76411 0.99039 1.00773 0.89517 1.21310 0.96858 0.97667 0.99778 1.20223 0.94985 0.98332 1.00072 1.21414 0.96035 0.98004 1.03200 1.21123 0.93376 0.89761 0.93626 1.43698 1.01306 1.44092 1.43377 1.18788 1.10289 1.17141 0.94042 0.90596 1.25601 0.98746 0.95219 0.96927 1.69757 1.22331 1.31337 1.31621 0.86569 0.78978 0.75249 0.85944 1.21481 1.23400 1.19364 1.21537 0.85578 0.91795 0.99232 1.21799 0.78909 1.01215 0.99142 0.92349 0.92230 0.92394 0.91751 0.91738 0.90533 0.91622 0.82224 0.91875 0.75240 0.89567 0.92305 0.93082 0.93182 0.93146 0.91014 0.94378 0.93841 0.92673 0.95488 0.92018 0.91050 0.88907 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.85 9.20 37.15 0.34 -0.51 16 2 C -0.11 -0.81 2.87 -90.51 -0.26 -1.07 16 3 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 4 C -0.12 -0.85 5.17 -26.69 -0.14 -0.99 16 5 C -0.13 -1.12 6.06 -26.83 -0.16 -1.28 16 6 C 0.04 0.47 6.25 -3.94 -0.02 0.44 16 7 N -0.58 -6.71 2.98 -173.54 -0.52 -7.23 16 8 C 0.51 6.98 7.75 -11.59 -0.09 6.89 16 9 O -0.53 -7.99 15.94 5.50 0.09 -7.90 16 10 C 0.51 7.36 7.75 -11.59 -0.09 7.27 16 11 O -0.51 -8.05 12.74 5.50 0.07 -7.98 16 12 N -0.68 -9.58 4.96 -54.79 -0.27 -9.86 16 13 C 0.12 1.98 2.28 -68.50 -0.16 1.83 16 14 H 0.09 1.44 6.74 -51.93 -0.35 1.09 16 15 C -0.12 -1.76 5.06 -28.01 -0.14 -1.90 16 16 C -0.10 -1.46 5.15 -29.79 -0.15 -1.62 16 17 C -0.15 -2.61 5.74 -28.59 -0.16 -2.77 16 18 C 0.15 3.11 4.09 -4.08 -0.02 3.09 16 19 N -0.60 -13.77 1.84 -172.09 -0.32 -14.08 16 20 C -0.27 -7.44 9.76 -15.06 -0.15 -7.59 16 21 H 0.08 2.24 8.06 -52.49 -0.42 1.82 16 22 C 0.04 1.02 5.46 -17.43 -0.10 0.92 16 23 N -0.91 -27.57 13.97 55.49 0.78 -26.79 16 24 Si 0.90 22.59 24.62 -169.99 -4.18 18.40 16 25 H -0.29 -6.98 6.95 56.52 0.39 -6.59 16 26 H -0.31 -7.82 7.11 56.52 0.40 -7.42 16 27 H -0.27 -6.59 6.66 56.52 0.38 -6.21 16 28 C 0.14 2.87 5.84 -2.94 -0.02 2.85 16 29 C 0.11 1.05 5.70 -3.71 -0.02 1.03 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.16 2.06 3.75 -56.88 -0.21 1.84 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.41 5.22 8.03 -40.82 -0.33 4.89 16 40 H 0.09 1.47 7.48 -51.93 -0.39 1.09 16 41 H 0.06 0.74 7.94 -51.93 -0.41 0.33 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.71 7.36 -51.93 -0.38 0.33 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 46 H 0.04 0.75 8.07 -51.92 -0.42 0.33 16 47 H 0.04 1.02 2.88 -51.93 -0.15 0.87 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.06 1.25 7.87 -51.93 -0.41 0.84 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 52 H 0.09 0.95 7.05 -51.93 -0.37 0.59 16 LS Contribution 389.41 15.07 5.87 5.87 Total: -1.00 -30.74 389.41 -8.75 -39.50 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -8.93 Total: 3.49 kcal Atomic # 6 Polarization: 7.92 SS G_CDS: -1.34 Total: 6.59 kcal Atomic # 7 Polarization: -57.63 SS G_CDS: -0.33 Total: -57.96 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.16 Total: -15.88 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -4.18 Total: 18.40 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.74 -8.75 -39.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034430758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.506 kcal (2) G-P(sol) polarization free energy of solvation -30.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds