Wall clock time and date at job start Tue Mar 31 2020 21:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.52153 * 2 1 4 4 C 1.53040 * 109.50044 * 239.91782 * 2 1 3 5 5 C 1.53042 * 109.53799 * 178.68162 * 4 2 1 6 6 C 1.52759 * 109.38223 * 61.23804 * 5 4 2 7 7 N 1.46920 * 109.01162 * 305.58593 * 6 5 4 8 8 C 1.34779 * 120.63179 * 233.58684 * 7 6 5 9 9 O 1.21351 * 119.99766 * 186.20513 * 8 7 6 10 10 C 1.49443 * 119.99849 * 6.20590 * 8 7 6 11 11 O 1.21349 * 120.00518 * 6.25406 * 10 8 7 12 12 N 1.34776 * 119.99999 * 186.25428 * 10 8 7 13 13 C 1.46500 * 120.00332 * 180.02562 * 12 10 8 14 14 H 1.08999 * 109.36504 * 34.74116 * 13 12 10 15 15 C 1.50880 * 109.26748 * 154.42793 * 13 12 10 16 16 C 1.52573 * 109.35837 * 212.01284 * 15 13 12 17 17 C 1.47088 * 114.32313 * 274.98589 * 16 15 13 18 18 C 1.54864 * 110.32760 * 62.80508 * 17 16 15 19 19 N 1.44580 * 109.59578 * 288.73217 * 18 17 16 20 20 C 1.36927 * 118.64249 * 270.69819 * 19 18 17 21 21 H 1.08002 * 120.00267 * 134.70053 * 20 19 18 22 22 C 1.38812 * 120.00414 * 314.70402 * 20 19 18 23 23 N 1.31618 * 120.00299 * 173.99531 * 22 20 19 24 24 Si 1.86798 * 119.99913 * 353.99888 * 22 20 19 25 25 H 1.48497 * 109.47512 * 94.92165 * 24 22 20 26 26 H 1.48500 * 109.47300 * 214.92567 * 24 22 20 27 27 H 1.48507 * 109.47050 * 334.92374 * 24 22 20 28 28 C 1.47602 * 122.71191 * 90.72623 * 19 18 17 29 29 C 1.46929 * 118.73506 * 53.30912 * 7 6 5 30 30 H 1.09007 * 109.47549 * 299.91842 * 1 2 3 31 31 H 1.09002 * 109.47772 * 59.92538 * 1 2 3 32 32 H 1.09005 * 109.47107 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.45833 * 298.69985 * 4 2 1 34 34 H 1.08999 * 109.45987 * 58.65710 * 4 2 1 35 35 H 1.08997 * 109.49256 * 181.31401 * 5 4 2 36 36 H 1.09000 * 109.49720 * 301.40973 * 5 4 2 37 37 H 1.08998 * 109.50528 * 185.70356 * 6 5 4 38 38 H 1.09007 * 109.43188 * 65.42714 * 6 5 4 39 39 H 0.96999 * 120.00253 * 359.97438 * 12 10 8 40 40 H 1.08998 * 109.49233 * 92.04286 * 15 13 12 41 41 H 1.09003 * 109.48568 * 331.97689 * 15 13 12 42 42 H 1.09005 * 108.50978 * 153.73068 * 16 15 13 43 43 H 1.08999 * 108.51417 * 36.24149 * 16 15 13 44 44 H 1.09004 * 109.32297 * 183.06703 * 17 16 15 45 45 H 1.08997 * 109.32950 * 302.53947 * 17 16 15 46 46 H 1.09007 * 109.44599 * 48.76622 * 18 17 16 47 47 H 1.08998 * 109.45041 * 168.71679 * 18 17 16 48 48 H 0.97001 * 119.99946 * 180.02562 * 23 22 20 49 49 H 1.09000 * 108.95325 * 78.55299 * 28 19 18 50 50 H 1.09000 * 108.94422 * 197.26816 * 28 19 18 51 51 H 1.09001 * 109.58497 * 66.43988 * 29 7 6 52 52 H 1.09002 * 109.58285 * 186.85715 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8942 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2483 5 6 3.5709 -0.6950 -1.2659 6 6 4.1055 -1.4214 -0.0330 7 7 3.5046 -0.8289 1.1696 8 6 4.2811 -0.3853 2.1780 9 8 3.7734 -0.0022 3.2114 10 6 5.7674 -0.3651 2.0232 11 8 6.2699 -0.6396 0.9533 12 7 6.5498 -0.0420 3.0720 13 6 8.0068 -0.0217 2.9202 14 1 8.2609 0.3206 1.9170 15 6 8.6001 0.9226 3.9364 16 6 9.8571 1.5645 3.3570 17 6 11.0788 0.7626 3.5238 18 6 10.9489 -0.5802 2.7635 19 7 10.0037 -1.4348 3.4466 20 6 10.4652 -2.2723 4.4267 21 1 9.9345 -2.3508 5.3640 22 6 11.6153 -3.0204 4.2156 23 7 12.1253 -3.7343 5.1968 24 14 12.4391 -3.0140 2.5392 25 1 13.5217 -1.9977 2.5234 26 1 13.0151 -4.3551 2.2655 27 1 11.4353 -2.6841 1.4956 28 6 8.5619 -1.4421 3.1307 29 6 2.0413 -0.7237 1.2496 30 1 -0.3634 0.5126 0.8907 31 1 -0.3635 0.5150 -0.8893 32 1 -0.3633 -1.0277 -0.0005 33 1 1.6968 -1.7573 -1.2352 34 1 1.6581 -0.2246 -2.1389 35 1 3.9334 -1.1897 -2.1669 36 1 3.9159 0.3389 -1.2541 37 1 5.1895 -1.3157 0.0101 38 1 3.8413 -2.4774 -0.0913 39 1 6.1483 0.1777 3.9271 40 1 8.8574 0.3698 4.8399 41 1 7.8741 1.6987 4.1789 42 1 10.0076 2.5295 3.8411 43 1 9.6986 1.7365 2.2923 44 1 11.9311 1.3180 3.1322 45 1 11.2376 0.5633 4.5836 46 1 10.5991 -0.3904 1.7487 47 1 11.9211 -1.0718 2.7263 48 1 12.9292 -4.2567 5.0494 49 1 8.4014 -2.0231 2.2225 50 1 8.0221 -1.9136 3.9519 51 1 1.6053 -1.7215 1.2982 52 1 1.7637 -0.1577 2.1389 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034430758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:45 Heat of formation + Delta-G solvation = -55.663525 kcal Electronic energy + Delta-G solvation = -30879.147153 eV Core-core repulsion = 26878.801284 eV Total energy + Delta-G solvation = -4000.345870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.16729 -40.49136 -39.31742 -38.81685 -36.50579 -35.15768 -34.59048 -33.37838 -32.85477 -31.91784 -28.41191 -27.98685 -27.18569 -26.30013 -25.19183 -23.82687 -23.25156 -22.07536 -21.32063 -21.20534 -20.50113 -18.70150 -18.61663 -18.22418 -17.68505 -17.10188 -16.87911 -16.52214 -16.26438 -16.01137 -15.61828 -15.34258 -15.25000 -14.99966 -14.95131 -14.76944 -14.58451 -14.35987 -14.01457 -13.82424 -13.61077 -13.48577 -13.25986 -13.16930 -12.97196 -12.77113 -12.61574 -12.44397 -12.06665 -12.03668 -11.95722 -11.85458 -11.77590 -11.71393 -11.58580 -11.42473 -11.33311 -11.14961 -10.71090 -10.33840 -10.12963 -9.81693 -8.66059 -8.16183 -5.73158 0.24965 1.21249 1.29432 1.40498 1.51113 2.04734 2.37021 2.39799 3.12313 3.13630 3.39694 3.74021 3.76848 3.83184 3.91860 3.93332 4.09323 4.14303 4.25199 4.27141 4.31439 4.39809 4.45817 4.55053 4.62358 4.67194 4.70984 4.76307 4.81694 4.84982 4.87407 4.89231 4.97001 5.05330 5.06352 5.14734 5.18709 5.23188 5.27663 5.28714 5.33893 5.35059 5.37869 5.47093 5.55648 5.60847 5.95083 5.99799 6.17381 6.18808 6.65475 6.88265 7.03941 7.60859 7.99877 9.00042 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018888 B = 0.002728 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.064407 B =10262.871813 C =10664.074155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.102 4.102 3 H 0.063 0.937 4 C -0.114 4.114 5 C -0.126 4.126 6 C 0.041 3.959 7 N -0.575 5.575 8 C 0.507 3.493 9 O -0.546 6.546 10 C 0.508 3.492 11 O -0.523 6.523 12 N -0.678 5.678 13 C 0.142 3.858 14 H 0.089 0.911 15 C -0.113 4.113 16 C -0.099 4.099 17 C -0.137 4.137 18 C 0.137 3.863 19 N -0.609 5.609 20 C -0.257 4.257 21 H 0.039 0.961 22 C -0.022 4.022 23 N -0.957 5.957 24 Si 0.964 3.036 25 H -0.273 1.273 26 H -0.314 1.314 27 H -0.260 1.260 28 C 0.147 3.853 29 C 0.107 3.893 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.089 0.911 36 H 0.055 0.945 37 H 0.142 0.858 38 H 0.073 0.927 39 H 0.418 0.582 40 H 0.059 0.941 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.066 0.934 44 H 0.073 0.927 45 H 0.044 0.956 46 H 0.057 0.943 47 H 0.023 0.977 48 H 0.263 0.737 49 H 0.015 0.985 50 H 0.047 0.953 51 H 0.085 0.915 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.024 11.453 -13.738 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.121 4.121 3 H 0.082 0.918 4 C -0.151 4.151 5 C -0.164 4.164 6 C -0.079 4.079 7 N -0.307 5.307 8 C 0.290 3.710 9 O -0.424 6.424 10 C 0.290 3.710 11 O -0.402 6.402 12 N -0.330 5.330 13 C 0.037 3.963 14 H 0.107 0.893 15 C -0.151 4.151 16 C -0.136 4.136 17 C -0.177 4.177 18 C 0.012 3.988 19 N -0.333 5.333 20 C -0.387 4.387 21 H 0.056 0.944 22 C -0.218 4.218 23 N -0.601 5.601 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.244 1.244 27 H -0.184 1.184 28 C 0.021 3.979 29 C -0.014 4.014 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.097 0.903 35 H 0.108 0.892 36 H 0.073 0.927 37 H 0.158 0.842 38 H 0.092 0.908 39 H 0.256 0.744 40 H 0.078 0.922 41 H 0.107 0.893 42 H 0.096 0.904 43 H 0.085 0.915 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.076 0.924 47 H 0.041 0.959 48 H 0.072 0.928 49 H 0.033 0.967 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.845 11.367 -13.918 27.521 hybrid contribution 0.642 -0.602 0.272 0.922 sum -20.202 10.765 -13.646 26.650 Atomic orbital electron populations 1.21737 0.92644 1.02823 1.02618 1.21470 0.97203 0.99249 0.94156 0.91833 1.21636 0.94615 1.01335 0.97519 1.21749 0.96403 1.00756 0.97484 1.23236 1.04672 0.97016 0.82973 1.48097 1.07409 1.57326 1.17868 1.20019 0.87742 0.79175 0.84110 1.90732 1.75228 1.48560 1.27912 1.20300 0.88141 0.77874 0.84668 1.90326 1.75017 1.48509 1.26334 1.45975 1.06806 1.66386 1.13831 1.21385 0.77304 0.96343 1.01240 0.89255 1.21266 0.97833 0.97868 0.98112 1.20214 0.93206 0.98773 1.01443 1.21308 0.98707 0.96763 1.00904 1.21277 0.91785 0.90847 0.94925 1.43743 1.02819 1.44167 1.42587 1.18640 1.09396 1.16972 0.93676 0.94354 1.26273 0.99897 0.95401 1.00251 1.69898 1.23291 1.33185 1.33717 0.85546 0.78404 0.74868 0.81788 1.20032 1.24381 1.18415 1.21538 0.83891 0.94596 0.97891 1.22006 0.77458 1.02122 0.99841 0.92380 0.91244 0.91614 0.90891 0.90308 0.89226 0.92651 0.84200 0.90848 0.74380 0.92247 0.89273 0.90398 0.91537 0.90806 0.93738 0.92421 0.95922 0.92821 0.96716 0.93443 0.89726 0.89933 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 9.20 71.98 0.66 -0.64 16 2 C -0.10 -1.34 2.87 -10.72 -0.03 -1.37 16 3 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 4 C -0.11 -1.33 5.17 30.62 0.16 -1.17 16 5 C -0.13 -1.92 6.06 30.53 0.19 -1.73 16 6 C 0.04 0.83 6.25 86.22 0.54 1.36 16 7 N -0.58 -12.69 2.98 -821.32 -2.45 -15.13 16 8 C 0.51 13.59 7.75 87.27 0.68 14.26 16 9 O -0.55 -16.37 15.94 -3.25 -0.05 -16.42 16 10 C 0.51 14.35 7.75 87.27 0.68 15.03 16 11 O -0.52 -16.11 12.74 -3.25 -0.04 -16.15 16 12 N -0.68 -18.42 4.96 -445.63 -2.21 -20.63 16 13 C 0.14 4.34 2.28 44.62 0.10 4.44 16 14 H 0.09 2.75 6.74 -2.39 -0.02 2.74 16 15 C -0.11 -3.14 5.06 29.76 0.15 -2.99 16 16 C -0.10 -2.63 5.15 28.61 0.15 -2.48 16 17 C -0.14 -4.61 5.74 29.39 0.17 -4.44 16 18 C 0.14 5.58 4.09 87.37 0.36 5.94 16 19 N -0.61 -28.03 1.84 -698.36 -1.28 -29.31 16 20 C -0.26 -14.43 9.76 84.04 0.82 -13.61 16 21 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 22 C -0.02 -1.30 5.46 84.86 0.46 -0.84 16 23 N -0.96 -60.13 13.97 21.65 0.30 -59.83 16 24 Si 0.96 47.35 24.62 68.60 1.69 49.04 16 25 H -0.27 -12.69 6.95 99.48 0.69 -12.00 16 26 H -0.31 -15.76 7.11 99.48 0.71 -15.05 16 27 H -0.26 -12.19 6.66 99.48 0.66 -11.53 16 28 C 0.15 5.84 5.84 86.49 0.50 6.35 16 29 C 0.11 1.86 5.70 86.36 0.49 2.35 16 30 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 33 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.14 3.50 3.75 -80.76 -0.30 3.20 16 38 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 39 H 0.42 10.26 8.03 -92.71 -0.74 9.51 16 40 H 0.06 2.01 7.48 -2.39 -0.02 1.99 16 41 H 0.09 1.98 7.94 -2.39 -0.02 1.96 16 42 H 0.08 1.73 8.14 -2.38 -0.02 1.71 16 43 H 0.07 1.61 7.36 -2.39 -0.02 1.59 16 44 H 0.07 2.14 8.14 -2.38 -0.02 2.12 16 45 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 2.13 8.07 -2.38 -0.02 2.11 16 47 H 0.02 1.03 2.88 -2.39 -0.01 1.03 16 48 H 0.26 15.68 8.31 -92.71 -0.77 14.91 16 49 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 50 H 0.05 1.99 7.87 -2.39 -0.02 1.97 16 51 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 52 H 0.08 1.63 7.05 -2.39 -0.02 1.61 16 Total: -1.00 -68.66 389.41 1.85 -66.81 By element: Atomic # 1 Polarization: 21.35 SS G_CDS: -0.19 Total: 21.17 kcal Atomic # 6 Polarization: 14.38 SS G_CDS: 6.07 Total: 20.45 kcal Atomic # 7 Polarization: -119.26 SS G_CDS: -5.63 Total: -124.90 kcal Atomic # 8 Polarization: -32.48 SS G_CDS: -0.09 Total: -32.57 kcal Atomic # 14 Polarization: 47.35 SS G_CDS: 1.69 Total: 49.04 kcal Total: -68.66 1.85 -66.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034430758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.144 kcal (2) G-P(sol) polarization free energy of solvation -68.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.807 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds