Wall clock time and date at job start Tue Mar 31 2020 21:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 110.42434 * 2 1 4 4 C 1.54480 * 110.37172 * 237.68469 * 2 1 3 5 5 C 1.54516 * 104.06142 * 217.19362 * 4 2 1 6 6 C 1.54479 * 104.06084 * 0.02562 * 5 4 2 7 7 H 1.09005 * 110.46604 * 265.09679 * 6 5 4 8 8 C 1.50696 * 110.36942 * 142.81150 * 6 5 4 9 9 O 1.21280 * 120.00098 * 248.16350 * 8 6 5 10 10 N 1.34785 * 120.00301 * 68.16535 * 8 6 5 11 11 C 1.47018 * 125.64359 * 0.02562 * 10 8 6 12 12 C 1.54329 * 107.39956 * 180.94752 * 11 10 8 13 13 C 1.55545 * 102.75900 * 22.23975 * 12 11 10 14 14 H 1.09002 * 111.02998 * 82.55921 * 13 12 11 15 15 N 1.46901 * 110.99798 * 206.38432 * 13 12 11 16 16 C 1.46896 * 111.00312 * 296.26821 * 15 13 12 17 17 C 1.53236 * 109.33908 * 172.74459 * 16 15 13 18 18 N 1.47076 * 108.52172 * 53.83420 * 17 16 15 19 19 C 1.36941 * 120.88735 * 128.79359 * 18 17 16 20 20 H 1.07997 * 120.00269 * 208.80001 * 19 18 17 21 21 C 1.38810 * 119.99685 * 28.79193 * 19 18 17 22 22 N 1.31619 * 119.99991 * 14.69502 * 21 19 18 23 23 Si 1.86801 * 120.00046 * 194.68737 * 21 19 18 24 24 H 1.48495 * 109.46938 * 90.00533 * 23 21 19 25 25 H 1.48508 * 109.47074 * 210.00436 * 23 21 19 26 26 H 1.48499 * 109.47114 * 330.00470 * 23 21 19 27 27 C 1.47077 * 118.23790 * 308.80871 * 18 17 16 28 28 C 1.46902 * 111.00143 * 171.96361 * 15 13 12 29 29 C 1.47422 * 125.65078 * 179.97438 * 10 8 6 30 30 O 1.44418 * 104.80661 * 23.97843 * 6 5 4 31 31 H 1.08996 * 109.47007 * 299.15126 * 1 2 3 32 32 H 1.09005 * 109.46283 * 59.14801 * 1 2 3 33 33 H 1.08997 * 109.47134 * 179.14174 * 1 2 3 34 34 H 1.08998 * 110.51375 * 335.83667 * 4 2 1 35 35 H 1.08997 * 110.50688 * 98.41571 * 4 2 1 36 36 H 1.08998 * 110.50719 * 241.35870 * 5 4 2 37 37 H 1.08995 * 110.50788 * 118.64800 * 5 4 2 38 38 H 1.09001 * 109.88665 * 300.44205 * 11 10 8 39 39 H 1.08996 * 109.88543 * 61.45389 * 11 10 8 40 40 H 1.08993 * 110.71872 * 140.63373 * 12 11 10 41 41 H 1.08998 * 110.71775 * 263.91049 * 12 11 10 42 42 H 1.09003 * 109.49228 * 292.70625 * 16 15 13 43 43 H 1.08999 * 109.49495 * 52.78425 * 16 15 13 44 44 H 1.08992 * 109.63250 * 294.11916 * 17 16 15 45 45 H 1.09004 * 109.62429 * 173.53445 * 17 16 15 46 46 H 0.97000 * 119.99902 * 179.97438 * 22 21 19 47 47 H 1.09003 * 109.63335 * 291.47902 * 27 18 17 48 48 H 1.08997 * 109.79767 * 170.99191 * 27 18 17 49 49 H 1.09006 * 109.49378 * 307.22150 * 28 15 13 50 50 H 1.09001 * 109.49328 * 67.26805 * 28 15 13 51 51 H 1.09001 * 110.36621 * 274.74587 * 29 10 8 52 52 H 1.09006 * 110.36761 * 37.06252 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9104 1.0214 0.0000 4 6 2.0678 -0.7742 -1.2239 5 6 3.3178 -1.5059 -0.6857 6 6 3.3869 -1.0877 0.7998 7 1 4.0523 -0.2334 0.9247 8 6 3.8525 -2.2425 1.6487 9 8 3.0887 -2.7660 2.4320 10 7 5.1177 -2.6936 1.5376 11 6 6.1435 -2.1536 0.6333 12 6 7.4226 -2.9939 0.8321 13 6 6.8723 -4.3218 1.4265 14 1 6.5100 -4.9824 0.6388 15 7 7.8898 -4.9932 2.2462 16 6 9.0433 -5.3940 1.4297 17 6 10.1530 -5.9233 2.3442 18 7 9.5923 -6.9861 3.1923 19 6 10.2048 -8.2072 3.2862 20 1 9.6189 -9.0908 3.4921 21 6 11.5787 -8.3094 3.1165 22 7 12.3286 -7.2285 3.1546 23 14 12.3632 -9.9810 2.8341 24 1 12.4122 -10.2650 1.3774 25 1 13.7423 -9.9800 3.3850 26 1 11.5587 -11.0268 3.5156 27 6 8.3559 -6.7026 3.9368 28 6 7.3169 -6.1425 2.9596 29 6 5.7025 -3.8093 2.3034 30 8 2.0323 -0.7244 1.1444 31 1 -0.3633 0.5006 0.8975 32 1 -0.3632 0.5271 -0.8823 33 1 -0.3633 -1.0275 -0.0154 34 1 1.3276 -1.4921 -1.5771 35 1 2.3408 -0.0842 -2.0223 36 1 4.2109 -1.1775 -1.2172 37 1 3.1954 -2.5854 -0.7729 38 1 5.8053 -2.2321 -0.4000 39 1 6.3430 -1.1108 0.8796 40 1 7.9188 -3.1724 -0.1217 41 1 8.0987 -2.5067 1.5347 42 1 8.7417 -6.1764 0.7333 43 1 9.4113 -4.5326 0.8723 44 1 10.5281 -5.1143 2.9709 45 1 10.9644 -6.3278 1.7390 46 1 13.2888 -7.2999 3.0364 47 1 8.5582 -5.9684 4.7167 48 1 7.9776 -7.6202 4.3872 49 1 6.4327 -5.8239 3.5118 50 1 7.0388 -6.9143 2.2419 51 1 6.0755 -3.4554 3.2645 52 1 4.9639 -4.5976 2.4492 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052091621.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:53 Heat of formation + Delta-G solvation = -39.853139 kcal Electronic energy + Delta-G solvation = -30252.343413 eV Core-core repulsion = 26252.683134 eV Total energy + Delta-G solvation = -3999.660280 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.77882 -39.45164 -38.19940 -36.76125 -34.23044 -32.71669 -32.36465 -31.51015 -30.38754 -30.12664 -28.68099 -27.09355 -25.71321 -23.96536 -22.86202 -22.84934 -21.97808 -21.48224 -20.45431 -19.49943 -19.15862 -17.58895 -17.08786 -16.86143 -16.50196 -15.90594 -15.72664 -14.91298 -14.76952 -14.33403 -14.23079 -14.05773 -14.02546 -13.97449 -13.48115 -13.39369 -13.18784 -13.11066 -12.81480 -12.66061 -12.55840 -12.40338 -12.18210 -11.96657 -11.79379 -11.35882 -11.28890 -11.22039 -11.18634 -11.04015 -10.91826 -10.77024 -10.44309 -10.32722 -10.30060 -10.06003 -9.81077 -9.75066 -9.60105 -8.80716 -8.52459 -7.92275 -6.64861 -5.79221 -3.22953 2.38890 2.50108 3.36623 3.43602 3.44909 3.54693 3.98310 4.14145 4.21044 4.38402 4.40829 4.48868 4.54066 4.60417 4.67336 4.81647 4.86761 4.95111 5.04625 5.17920 5.21531 5.25385 5.31454 5.37595 5.39061 5.43702 5.44938 5.51323 5.62673 5.69253 5.75419 5.79691 5.81485 5.86548 5.92447 6.00873 6.12949 6.15014 6.23113 6.31126 6.42391 6.51470 6.67589 6.92863 7.20711 7.29705 7.53816 7.60777 7.67230 7.80171 7.98409 8.43896 9.20892 9.83164 10.42623 11.29589 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.035918 B = 0.002045 C = 0.002001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.364447 B =13688.833291 C =13989.293509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.072 0.928 4 C -0.149 4.149 5 C -0.144 4.144 6 C 0.064 3.936 7 H 0.094 0.906 8 C 0.533 3.467 9 O -0.520 6.520 10 N -0.615 5.615 11 C 0.098 3.902 12 C -0.122 4.122 13 C 0.069 3.931 14 H 0.051 0.949 15 N -0.520 5.520 16 C 0.036 3.964 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.117 3.883 30 O -0.342 6.342 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.091 0.909 42 H 0.025 0.975 43 H 0.062 0.938 44 H 0.027 0.973 45 H 0.087 0.913 46 H 0.254 0.746 47 H 0.026 0.974 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.029 0.971 51 H 0.082 0.918 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.283 16.688 -11.693 26.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.008 3.992 3 H 0.090 0.910 4 C -0.187 4.187 5 C -0.182 4.182 6 C 0.003 3.997 7 H 0.111 0.889 8 C 0.320 3.680 9 O -0.394 6.394 10 N -0.352 5.352 11 C -0.025 4.025 12 C -0.160 4.160 13 C -0.041 4.041 14 H 0.068 0.932 15 N -0.246 5.246 16 C -0.093 4.093 17 C 0.053 3.947 18 N -0.318 5.318 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.734 3.266 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.022 3.978 28 C -0.088 4.088 29 C -0.005 4.005 30 O -0.260 6.260 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.087 0.913 39 H 0.089 0.911 40 H 0.100 0.900 41 H 0.110 0.890 42 H 0.043 0.957 43 H 0.081 0.919 44 H 0.045 0.955 45 H 0.105 0.895 46 H 0.064 0.936 47 H 0.044 0.956 48 H 0.074 0.926 49 H 0.082 0.918 50 H 0.047 0.953 51 H 0.100 0.900 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -17.557 16.704 -10.699 26.490 hybrid contribution 0.421 -1.299 -1.025 1.707 sum -17.137 15.404 -11.724 25.854 Atomic orbital electron populations 1.21796 0.92785 1.03210 1.02565 1.23088 0.95809 0.95398 0.84879 0.91003 1.23022 0.97436 0.99871 0.98380 1.22914 0.99396 1.02274 0.93608 1.22745 0.87044 0.96076 0.93861 0.88881 1.19799 0.80393 0.84309 0.83454 1.90743 1.53075 1.58229 1.37392 1.48340 1.10260 1.34974 1.41591 1.22177 0.88310 0.98300 0.93743 1.22758 0.95988 0.95075 1.02226 1.22816 0.92042 0.94948 0.94278 0.93161 1.62017 1.06619 1.27833 1.28113 1.22920 0.92590 0.97809 0.95935 1.20843 0.92073 0.90054 0.91682 1.44091 1.25791 1.12287 1.49670 1.19193 0.89515 0.84817 1.44630 0.91737 1.25088 0.96274 0.96952 1.01317 1.70006 1.04457 1.27013 1.53365 0.86271 0.78597 0.83839 0.77939 1.21515 1.21709 1.20456 1.20970 0.87135 0.97330 0.92319 1.22684 0.97917 0.90874 0.97353 1.22258 0.94458 0.88451 0.95317 1.89300 1.24890 1.74194 1.37653 0.91628 0.91005 0.91594 0.90161 0.90046 0.89422 0.90113 0.91319 0.91136 0.89992 0.89003 0.95680 0.91919 0.95467 0.89495 0.93620 0.95592 0.92568 0.91817 0.95312 0.89983 0.90587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.52 37.16 0.35 -0.61 16 2 C 0.07 0.51 3.92 -25.95 -0.10 0.40 16 3 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.15 -0.91 6.63 -25.16 -0.17 -1.08 16 5 C -0.14 -1.04 5.60 -25.16 -0.14 -1.18 16 6 C 0.06 0.64 3.08 -27.11 -0.08 0.56 16 7 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 8 C 0.53 7.20 7.12 -10.98 -0.08 7.12 16 9 O -0.52 -9.40 16.81 -13.63 -0.23 -9.63 16 10 N -0.62 -7.27 3.33 -170.52 -0.57 -7.84 16 11 C 0.10 0.83 6.24 -3.06 -0.02 0.82 16 12 C -0.12 -1.25 5.46 -24.68 -0.13 -1.39 16 13 C 0.07 0.91 2.72 -65.35 -0.18 0.73 16 14 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 15 N -0.52 -8.66 4.53 -223.52 -1.01 -9.67 16 16 C 0.04 0.67 5.49 -3.70 -0.02 0.65 16 17 C 0.18 4.20 5.39 -3.61 -0.02 4.18 16 18 N -0.60 -14.88 3.03 -172.02 -0.52 -15.40 16 19 C -0.25 -6.89 9.62 -15.06 -0.14 -7.03 16 20 H 0.06 1.74 7.87 -52.49 -0.41 1.33 16 21 C 0.00 0.06 4.98 -17.43 -0.09 -0.02 16 22 N -0.90 -25.96 11.17 55.49 0.62 -25.34 16 23 Si 0.90 21.57 29.58 -169.99 -5.03 16.54 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 26 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 27 C 0.15 3.16 6.69 -3.60 -0.02 3.13 16 28 C 0.04 0.72 5.46 -3.70 -0.02 0.70 16 29 C 0.12 1.57 5.23 -2.53 -0.01 1.56 16 30 O -0.34 -4.11 10.61 -54.42 -0.58 -4.69 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 34 H 0.08 0.49 7.86 -51.93 -0.41 0.08 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.09 0.43 7.28 -51.93 -0.38 0.05 16 37 H 0.08 0.68 7.86 -51.93 -0.41 0.27 16 38 H 0.07 0.46 6.53 -51.93 -0.34 0.12 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.08 0.74 7.95 -51.93 -0.41 0.33 16 41 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.06 1.00 6.94 -51.93 -0.36 0.64 16 44 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 2.26 6.22 -51.93 -0.32 1.93 16 46 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 49 H 0.06 1.00 6.73 -51.93 -0.35 0.65 16 50 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 51 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 52 H 0.08 1.10 7.74 -51.93 -0.40 0.70 16 LS Contribution 396.74 15.07 5.98 5.98 Total: -1.00 -33.23 396.74 -11.47 -44.70 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: -9.26 Total: -3.19 kcal Atomic # 6 Polarization: 9.41 SS G_CDS: -0.88 Total: 8.53 kcal Atomic # 7 Polarization: -56.77 SS G_CDS: -1.48 Total: -58.25 kcal Atomic # 8 Polarization: -13.51 SS G_CDS: -0.81 Total: -14.32 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.23 -11.47 -44.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052091621.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.848 kcal (2) G-P(sol) polarization free energy of solvation -33.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds