Wall clock time and date at job start Tue Mar 31 2020 21:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08994 * 110.01031 * 2 1 4 4 C 1.54322 * 109.88521 * 121.11155 * 2 1 3 5 5 C 1.55143 * 103.01663 * 141.69152 * 4 2 1 6 6 C 1.54909 * 101.65491 * 324.34577 * 5 4 2 7 7 H 1.08999 * 110.37263 * 278.24494 * 6 5 4 8 8 C 1.52994 * 110.37262 * 155.90031 * 6 5 4 9 9 N 1.47438 * 109.89113 * 238.88119 * 2 1 3 10 10 C 1.46907 * 111.00010 * 3.85221 * 9 2 1 11 11 C 1.50701 * 109.46975 * 166.62723 * 10 9 2 12 12 O 1.21276 * 120.00411 * 344.48594 * 11 10 9 13 13 N 1.34773 * 119.99510 * 164.48471 * 11 10 9 14 14 C 1.47123 * 121.06915 * 0.02562 * 13 11 10 15 15 C 1.53231 * 108.75545 * 232.30339 * 14 13 11 16 16 O 1.43134 * 109.33554 * 305.80829 * 15 14 13 17 17 C 1.42363 * 113.98832 * 59.77569 * 16 15 14 18 18 C 1.52923 * 114.28251 * 74.89897 * 17 16 15 19 19 N 1.47172 * 87.91421 * 88.32236 * 18 17 16 20 20 C 1.36932 * 136.00116 * 206.61026 * 19 18 17 21 21 H 1.08001 * 120.00204 * 359.97438 * 20 19 18 22 22 C 1.38811 * 120.00024 * 179.97438 * 20 19 18 23 23 N 1.31621 * 120.00447 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 120.00170 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46829 * 0.02562 * 24 22 20 26 26 H 1.48504 * 109.46995 * 120.00251 * 24 22 20 27 27 H 1.48497 * 109.47451 * 240.00238 * 24 22 20 28 28 C 1.47174 * 87.99691 * 26.60519 * 19 18 17 29 29 C 1.47368 * 121.06460 * 180.02562 * 13 11 10 30 30 H 1.09001 * 109.47188 * 174.89537 * 1 2 3 31 31 H 1.08990 * 109.47422 * 294.89619 * 1 2 3 32 32 H 1.09001 * 109.47150 * 54.89769 * 1 2 3 33 33 H 1.08991 * 110.70765 * 23.30849 * 4 2 1 34 34 H 1.09003 * 110.70472 * 260.06945 * 4 2 1 35 35 H 1.08998 * 110.99127 * 206.25217 * 5 4 2 36 36 H 1.09008 * 110.99227 * 82.43705 * 5 4 2 37 37 H 1.09003 * 109.47170 * 292.09510 * 8 6 5 38 38 H 1.09001 * 109.47371 * 52.09899 * 8 6 5 39 39 H 1.09011 * 109.46991 * 172.09722 * 8 6 5 40 40 H 1.08997 * 109.46717 * 46.62684 * 10 9 2 41 41 H 1.09003 * 109.46583 * 286.62509 * 10 9 2 42 42 H 1.08998 * 109.59049 * 112.52518 * 14 13 11 43 43 H 1.08999 * 109.71449 * 352.16111 * 14 13 11 44 44 H 1.08995 * 109.49491 * 185.84652 * 15 14 13 45 45 H 1.09002 * 109.48954 * 65.75964 * 15 14 13 46 46 H 1.08999 * 113.49358 * 333.54676 * 18 17 16 47 47 H 1.08996 * 113.49277 * 203.09552 * 18 17 16 48 48 H 0.97000 * 120.00722 * 179.97438 * 23 22 20 49 49 H 1.08994 * 113.48728 * 88.10865 * 28 19 18 50 50 H 1.08998 * 113.48960 * 218.54855 * 28 19 18 51 51 H 1.09003 * 109.74878 * 12.11187 * 29 13 11 52 52 H 1.08996 * 109.75084 * 251.38350 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9030 1.0241 0.0000 4 6 2.0549 -0.7498 1.2425 5 6 3.2892 -1.5134 0.6942 6 6 2.8190 -1.8834 -0.7346 7 1 2.1940 -2.7760 -0.7092 8 6 4.0238 -2.1010 -1.6522 9 7 2.0317 -0.7165 -1.1869 10 6 0.9240 -1.1341 -2.0569 11 6 1.4699 -1.5611 -3.3951 12 8 2.6032 -1.2657 -3.7100 13 7 0.6985 -2.2711 -4.2420 14 6 -0.6796 -2.6417 -3.8843 15 6 -0.8494 -4.1524 -4.0771 16 8 -0.4638 -4.5064 -5.4093 17 6 0.8867 -4.1855 -5.7255 18 6 1.9194 -5.1214 -5.0961 19 7 1.7819 -5.9828 -6.2814 20 6 1.9488 -7.3138 -6.5566 21 1 2.2589 -7.9920 -5.7754 22 6 1.7195 -7.7914 -7.8396 23 7 1.3420 -6.9649 -8.7919 24 14 1.9478 -9.6070 -8.2151 25 1 2.3737 -10.3176 -6.9827 26 1 0.6644 -10.1781 -8.6969 27 1 2.9863 -9.7688 -9.2642 28 6 1.3862 -4.7862 -7.0413 29 6 1.2085 -2.7013 -5.5560 30 1 -0.3633 -1.0236 -0.0914 31 1 -0.3634 0.4326 0.9321 32 1 -0.3633 0.5909 -0.8408 33 1 1.3055 -1.4470 1.6170 34 1 2.3514 -0.0463 2.0205 35 1 3.4882 -2.4084 1.2838 36 1 4.1658 -0.8664 0.6615 37 1 4.5359 -1.1520 -1.8107 38 1 4.7093 -2.8111 -1.1895 39 1 3.6844 -2.4952 -2.6102 40 1 0.2359 -0.3001 -2.1945 41 1 0.3957 -1.9692 -1.5968 42 1 -1.3799 -2.1102 -4.5286 43 1 -0.8717 -2.3823 -2.8432 44 1 -1.8923 -4.4247 -3.9157 45 1 -0.2197 -4.6831 -3.3630 46 1 1.5753 -5.5917 -4.1750 47 1 2.9082 -4.6736 -4.9969 48 1 1.1821 -7.2986 -9.6886 49 1 2.2295 -4.2463 -7.4717 50 1 0.5923 -4.9735 -7.7643 51 1 2.2873 -2.5511 -5.5996 52 1 0.7239 -2.1267 -6.3453 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053541072.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:53 Heat of formation + Delta-G solvation = -8.476807 kcal Electronic energy + Delta-G solvation = -31636.345109 eV Core-core repulsion = 27638.045409 eV Total energy + Delta-G solvation = -3998.299700 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.89433 -40.91445 -39.46320 -37.82070 -35.71863 -34.35037 -33.90577 -33.01034 -31.55455 -29.57536 -29.06288 -28.51116 -26.74428 -26.54701 -24.77292 -24.58585 -23.57862 -21.85471 -21.10353 -20.39104 -19.61655 -18.83447 -18.47467 -17.62609 -17.15899 -17.10319 -16.72132 -16.38836 -16.22859 -15.97841 -15.73146 -15.33926 -15.06795 -15.02550 -14.81523 -14.50279 -14.17546 -13.91915 -13.74186 -13.61918 -13.49080 -13.35628 -13.07671 -12.97502 -12.86765 -12.78476 -12.60395 -12.50840 -12.22511 -12.13166 -12.09096 -11.93623 -11.71484 -11.59454 -11.55707 -11.50835 -11.23492 -11.02137 -10.71651 -10.60583 -9.48479 -9.20856 -8.97495 -7.93659 -5.28136 1.43394 1.45685 1.55755 1.65696 1.84771 2.43647 2.66696 2.92941 3.26827 3.32615 3.45699 3.55306 3.66824 3.78530 3.83941 3.98701 4.07006 4.07724 4.20205 4.24912 4.29136 4.35288 4.43919 4.46761 4.49183 4.54172 4.58859 4.65551 4.66798 4.71733 4.79125 4.81410 4.84883 4.87143 4.94661 5.00760 5.01988 5.11226 5.16752 5.16954 5.23347 5.28934 5.33026 5.42416 5.45814 5.52768 5.85982 6.02860 6.12368 6.37692 6.46927 6.85588 7.26193 7.54418 8.52972 9.24170 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.019699 B = 0.002892 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1421.014946 B = 9678.899221 C =10200.909563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.067 3.933 3 H 0.083 0.917 4 C -0.131 4.131 5 C -0.123 4.123 6 C 0.070 3.930 7 H 0.048 0.952 8 C -0.127 4.127 9 N -0.525 5.525 10 C 0.038 3.962 11 C 0.505 3.495 12 O -0.550 6.550 13 N -0.616 5.616 14 C 0.077 3.923 15 C 0.036 3.964 16 O -0.364 6.364 17 C 0.081 3.919 18 C 0.106 3.894 19 N -0.631 5.631 20 C -0.233 4.233 21 H 0.083 0.917 22 C -0.065 4.065 23 N -0.951 5.951 24 Si 0.984 3.016 25 H -0.265 1.265 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.169 3.831 29 C 0.116 3.884 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.087 0.913 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.132 0.868 41 H 0.082 0.918 42 H 0.094 0.906 43 H 0.128 0.872 44 H 0.131 0.869 45 H 0.045 0.955 46 H 0.042 0.958 47 H 0.040 0.960 48 H 0.250 0.750 49 H 0.038 0.962 50 H 0.048 0.952 51 H 0.085 0.915 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.143 16.121 22.424 28.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.040 4.040 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.161 4.161 6 C -0.037 4.037 7 H 0.066 0.934 8 C -0.185 4.185 9 N -0.250 5.250 10 C -0.092 4.092 11 C 0.294 3.706 12 O -0.427 6.427 13 N -0.351 5.351 14 C -0.045 4.045 15 C -0.041 4.041 16 O -0.282 6.282 17 C 0.038 3.962 18 C -0.020 4.020 19 N -0.356 5.356 20 C -0.360 4.360 21 H 0.100 0.900 22 C -0.258 4.258 23 N -0.599 5.599 24 Si 0.812 3.188 25 H -0.190 1.190 26 H -0.215 1.215 27 H -0.217 1.217 28 C 0.042 3.958 29 C -0.008 4.008 30 H 0.083 0.917 31 H 0.095 0.905 32 H 0.086 0.914 33 H 0.097 0.903 34 H 0.106 0.894 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.060 0.940 40 H 0.150 0.850 41 H 0.100 0.900 42 H 0.112 0.888 43 H 0.146 0.854 44 H 0.149 0.851 45 H 0.063 0.937 46 H 0.061 0.939 47 H 0.058 0.942 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.066 0.934 51 H 0.103 0.897 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.339 16.227 21.677 27.599 hybrid contribution 0.186 -1.590 -0.444 1.661 sum -5.153 14.637 21.232 26.298 Atomic orbital electron populations 1.22393 0.94064 1.02710 1.03489 1.22525 0.95234 0.98402 0.87874 0.89855 1.22859 0.97128 0.99533 0.97390 1.22735 0.98669 1.00892 0.93815 1.22591 0.94791 0.91464 0.94896 0.93442 1.21740 0.97162 1.00738 0.98878 1.63270 1.20969 1.23615 1.17129 1.22380 0.94419 1.02533 0.89893 1.21268 0.85148 0.77272 0.86923 1.90669 1.19657 1.55533 1.76888 1.48323 1.15213 1.54600 1.16966 1.22629 0.81951 0.95525 1.04388 1.23258 1.02509 0.94686 0.83600 1.87971 1.25446 1.83216 1.31616 1.22765 0.83219 0.91923 0.98244 1.22916 0.96454 0.90997 0.91591 1.45719 1.79602 1.02392 1.07927 1.19309 1.39332 0.82232 0.95165 0.89965 1.25682 1.02053 1.02606 0.95458 1.70015 1.53143 1.35024 1.01731 0.84936 0.77000 0.79002 0.77901 1.18974 1.21536 1.21665 1.21955 0.95979 0.85184 0.92659 1.21754 1.00958 0.92531 0.85545 0.91709 0.90476 0.91391 0.90341 0.89393 0.89946 0.91080 0.93400 0.92898 0.94007 0.85048 0.90014 0.88780 0.85394 0.85088 0.93659 0.93950 0.94195 0.94069 0.94474 0.93384 0.89669 0.89858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.36 7.80 71.98 0.56 -0.80 16 2 C 0.07 0.88 4.02 45.26 0.18 1.06 16 3 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 4 C -0.13 -1.44 6.47 31.78 0.21 -1.24 16 5 C -0.12 -1.87 6.49 31.98 0.21 -1.67 16 6 C 0.07 1.46 2.85 45.38 0.13 1.59 16 7 H 0.05 0.99 7.57 -2.39 -0.02 0.97 16 8 C -0.13 -3.40 8.28 71.98 0.60 -2.81 16 9 N -0.52 -10.27 4.50 -840.30 -3.78 -14.05 16 10 C 0.04 0.66 2.99 85.56 0.26 0.92 16 11 C 0.50 13.29 7.01 87.66 0.61 13.90 16 12 O -0.55 -19.12 12.56 -3.02 -0.04 -19.16 16 13 N -0.62 -15.80 3.03 -817.93 -2.48 -18.27 16 14 C 0.08 1.39 6.48 86.34 0.56 1.94 16 15 C 0.04 0.89 6.91 72.06 0.50 1.38 16 16 O -0.36 -13.85 10.54 -148.98 -1.57 -15.42 16 17 C 0.08 3.20 1.29 -10.87 -0.01 3.18 16 18 C 0.11 4.72 7.90 83.31 0.66 5.38 16 19 N -0.63 -34.68 3.79 -738.47 -2.80 -37.48 16 20 C -0.23 -13.77 10.74 84.03 0.90 -12.87 16 21 H 0.08 4.67 7.83 -2.91 -0.02 4.65 16 22 C -0.06 -3.83 5.50 84.86 0.47 -3.37 16 23 N -0.95 -59.27 11.51 21.65 0.25 -59.02 16 24 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 25 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 26 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 27 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 28 C 0.17 8.51 6.82 83.35 0.57 9.07 16 29 C 0.12 3.80 5.84 86.15 0.50 4.30 16 30 H 0.06 0.47 6.71 -2.39 -0.02 0.45 16 31 H 0.08 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.07 0.52 6.68 -2.39 -0.02 0.50 16 33 H 0.08 0.73 7.85 -2.39 -0.02 0.71 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.17 8.06 -2.38 -0.02 1.15 16 37 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 39 H 0.04 1.38 5.56 -2.38 -0.01 1.36 16 40 H 0.13 1.68 5.97 -2.39 -0.01 1.67 16 41 H 0.08 1.08 5.48 -2.39 -0.01 1.07 16 42 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.13 1.26 5.72 -2.39 -0.01 1.24 16 44 H 0.13 2.40 8.14 -2.39 -0.02 2.38 16 45 H 0.05 1.17 7.30 -2.39 -0.02 1.15 16 46 H 0.04 1.82 7.35 -2.39 -0.02 1.80 16 47 H 0.04 1.78 7.93 -2.39 -0.02 1.77 16 48 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 49 H 0.04 1.88 8.09 -2.39 -0.02 1.86 16 50 H 0.05 2.74 7.14 -2.39 -0.02 2.72 16 51 H 0.08 3.08 6.90 -2.39 -0.02 3.06 16 52 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 Total: -1.00 -78.19 387.91 -0.59 -78.78 By element: Atomic # 1 Polarization: 14.60 SS G_CDS: 0.90 Total: 15.50 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 6.89 Total: 19.98 kcal Atomic # 7 Polarization: -120.02 SS G_CDS: -8.81 Total: -128.82 kcal Atomic # 8 Polarization: -32.97 SS G_CDS: -1.61 Total: -34.58 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -78.19 -0.59 -78.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053541072.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.301 kcal (2) G-P(sol) polarization free energy of solvation -78.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.778 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds