Wall clock time and date at job start Tue Mar 31 2020 21:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.42197 * 2 1 4 4 C 1.54905 * 110.37741 * 237.68919 * 2 1 3 5 5 C 1.55134 * 101.65895 * 204.09910 * 4 2 1 6 6 C 1.54322 * 103.01581 * 35.64823 * 5 4 2 7 7 H 1.08998 * 109.88648 * 97.13051 * 6 5 4 8 8 C 1.53000 * 109.88931 * 218.30999 * 6 5 4 9 9 N 1.47436 * 107.23724 * 337.71914 * 6 5 4 10 10 C 1.46900 * 111.00045 * 236.74170 * 9 6 5 11 11 C 1.50700 * 109.47038 * 72.29835 * 10 9 6 12 12 O 1.21278 * 120.00037 * 353.75925 * 11 10 9 13 13 N 1.34776 * 119.99663 * 173.75688 * 11 10 9 14 14 C 1.47125 * 121.05465 * 0.02562 * 13 11 10 15 15 C 1.53226 * 108.73334 * 127.80858 * 14 13 11 16 16 O 1.43115 * 109.34326 * 54.12040 * 15 14 13 17 17 C 1.42490 * 113.96287 * 300.02905 * 16 15 14 18 18 C 1.53466 * 113.76318 * 286.84694 * 17 16 15 19 19 N 1.47674 * 85.96866 * 268.71326 * 18 17 16 20 20 C 1.36938 * 134.45988 * 155.72220 * 19 18 17 21 21 H 1.07993 * 120.00224 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99589 * 359.97438 * 20 19 18 23 23 N 1.31620 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99698 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46829 * 90.00354 * 24 22 20 26 26 H 1.48505 * 109.46869 * 209.99938 * 24 22 20 27 27 H 1.48495 * 109.47292 * 330.00337 * 24 22 20 28 28 C 1.47680 * 91.08659 * 335.70714 * 19 18 17 29 29 C 1.47342 * 121.04988 * 180.02562 * 13 11 10 30 30 H 1.08998 * 109.46956 * 301.39051 * 1 2 3 31 31 H 1.08994 * 109.47350 * 61.39818 * 1 2 3 32 32 H 1.09007 * 109.46923 * 181.39632 * 1 2 3 33 33 H 1.09001 * 110.99149 * 86.00142 * 4 2 1 34 34 H 1.09005 * 111.02353 * 322.20477 * 4 2 1 35 35 H 1.09000 * 110.70627 * 277.27228 * 5 4 2 36 36 H 1.08996 * 110.71261 * 154.03375 * 5 4 2 37 37 H 1.08997 * 109.47301 * 170.58748 * 8 6 5 38 38 H 1.08997 * 109.47233 * 290.58850 * 8 6 5 39 39 H 1.09004 * 109.46949 * 50.58989 * 8 6 5 40 40 H 1.08997 * 109.47061 * 312.29688 * 10 9 6 41 41 H 1.09001 * 109.47075 * 192.29619 * 10 9 6 42 42 H 1.08994 * 109.59194 * 8.03624 * 14 13 11 43 43 H 1.08994 * 109.59031 * 247.58255 * 14 13 11 44 44 H 1.09004 * 109.49348 * 294.16104 * 15 14 13 45 45 H 1.09002 * 109.49195 * 174.08019 * 15 14 13 46 46 H 1.09000 * 113.79446 * 22.97121 * 18 17 16 47 47 H 1.09001 * 113.79552 * 154.45126 * 18 17 16 48 48 H 0.96994 * 119.99945 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.78851 * 270.03377 * 28 19 18 50 50 H 1.08995 * 113.78978 * 138.56246 * 28 19 18 51 51 H 1.09003 * 109.75048 * 348.00646 * 29 13 11 52 52 H 1.09004 * 109.74355 * 108.68752 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7762 -1.2273 5 6 3.4786 -1.1994 -0.7359 6 6 3.2536 -1.4806 0.7647 7 1 3.1057 -2.5487 0.9237 8 6 4.4584 -0.9931 1.5720 9 7 2.0448 -0.7408 1.1713 10 6 2.3358 0.1717 2.2851 11 6 3.1507 1.3351 1.7816 12 8 3.5549 1.3425 0.6381 13 7 3.4304 2.3672 2.6019 14 6 2.9522 2.3818 3.9933 15 6 4.1428 2.6493 4.9199 16 8 4.8076 3.8466 4.5042 17 6 5.3111 3.7963 3.1721 18 6 6.5522 2.9077 3.0133 19 7 7.3343 4.1326 3.2751 20 6 8.5911 4.3833 3.7575 21 1 8.9386 5.4011 3.8563 22 6 9.4185 3.3292 4.1197 23 7 8.9949 2.0888 3.9999 24 14 11.1332 3.6711 4.7772 25 1 11.0782 3.8097 6.2548 26 1 12.0342 2.5464 4.4187 27 1 11.6503 4.9290 4.1810 28 6 6.2181 4.9790 2.8075 29 6 4.2245 3.5165 2.1338 30 1 -0.3633 0.5353 0.8772 31 1 -0.3634 0.4919 -0.9022 32 1 -0.3633 -1.0274 0.0250 33 1 2.1388 -0.1270 -2.1001 34 1 1.4518 -1.6488 -1.4404 35 1 4.1942 -0.3887 -0.8729 36 1 3.8120 -2.1003 -1.2510 37 1 4.2259 -1.0400 2.6359 38 1 5.3188 -1.6277 1.3598 39 1 4.6887 0.0358 1.2955 40 1 2.8975 -0.3600 3.0532 41 1 1.4006 0.5391 2.7077 42 1 2.5086 1.4167 4.2375 43 1 2.2092 3.1698 4.1161 44 1 4.8381 1.8113 4.8701 45 1 3.7876 2.7673 5.9437 46 1 6.6516 2.1484 3.7891 47 1 6.6822 2.5095 2.0070 48 1 9.5732 1.3523 4.2526 49 1 6.2487 5.1969 1.7400 50 1 6.0521 5.8654 3.4197 51 1 4.6844 3.2801 1.1742 52 1 3.5813 4.3902 2.0285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053541074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:13 Heat of formation + Delta-G solvation = 28.509373 kcal Electronic energy + Delta-G solvation = -32358.513811 eV Core-core repulsion = 28361.817952 eV Total energy + Delta-G solvation = -3996.695859 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.27169 -39.72841 -37.79550 -36.22699 -34.48802 -32.97871 -32.35244 -32.04709 -30.05005 -28.29198 -28.02432 -26.94116 -25.24915 -25.08904 -23.70779 -23.34681 -21.86864 -20.91671 -20.00777 -19.01067 -18.62505 -17.39752 -16.90171 -16.54480 -16.15328 -15.82747 -15.58695 -15.02838 -14.68211 -14.51172 -14.38247 -14.17304 -13.90981 -13.57308 -13.32689 -13.20890 -12.99490 -12.87746 -12.77712 -12.40212 -12.27354 -11.98324 -11.63577 -11.58773 -11.41284 -11.34871 -11.16716 -10.90366 -10.88693 -10.83866 -10.74640 -10.65974 -10.56950 -10.34806 -10.22376 -9.97656 -9.81560 -9.59063 -9.25084 -8.84087 -8.32791 -8.13406 -6.89375 -5.76414 -3.08628 2.56464 2.94416 3.39603 3.44050 3.46087 3.83640 4.01881 4.42993 4.48455 4.66145 4.70305 4.87430 4.96624 5.03455 5.09536 5.17549 5.21907 5.22643 5.26851 5.30426 5.36180 5.41931 5.50587 5.54743 5.56909 5.67751 5.70877 5.73891 5.78685 5.81490 5.89996 5.93840 5.97428 6.03870 6.10672 6.15591 6.25604 6.31254 6.37836 6.40613 6.46844 6.51890 6.59113 6.94966 6.97088 6.98089 7.16498 7.40376 7.48368 7.78491 7.96826 8.15430 9.03610 9.70392 10.56422 11.40628 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003448 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.949901 B = 8118.285220 C = 8870.578584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.045 3.955 3 H 0.094 0.906 4 C -0.116 4.116 5 C -0.130 4.130 6 C 0.077 3.923 7 H 0.079 0.921 8 C -0.197 4.197 9 N -0.499 5.499 10 C 0.021 3.979 11 C 0.491 3.509 12 O -0.529 6.529 13 N -0.606 5.606 14 C 0.073 3.927 15 C 0.047 3.953 16 O -0.341 6.341 17 C 0.050 3.950 18 C 0.154 3.846 19 N -0.603 5.603 20 C -0.219 4.219 21 H 0.081 0.919 22 C -0.007 4.007 23 N -0.922 5.922 24 Si 0.912 3.088 25 H -0.288 1.288 26 H -0.291 1.291 27 H -0.281 1.281 28 C 0.135 3.865 29 C 0.098 3.902 30 H 0.048 0.952 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.081 0.919 36 H 0.062 0.938 37 H 0.056 0.944 38 H 0.057 0.943 39 H 0.090 0.910 40 H 0.113 0.887 41 H 0.098 0.902 42 H 0.090 0.910 43 H 0.076 0.924 44 H 0.061 0.939 45 H 0.101 0.899 46 H 0.075 0.925 47 H 0.031 0.969 48 H 0.253 0.747 49 H 0.049 0.951 50 H 0.056 0.944 51 H 0.100 0.900 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.666 -5.148 -4.236 19.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.063 4.063 3 H 0.112 0.888 4 C -0.154 4.154 5 C -0.168 4.168 6 C -0.031 4.031 7 H 0.097 0.903 8 C -0.255 4.255 9 N -0.222 5.222 10 C -0.110 4.110 11 C 0.279 3.721 12 O -0.409 6.409 13 N -0.340 5.340 14 C -0.051 4.051 15 C -0.031 4.031 16 O -0.259 6.259 17 C 0.008 3.992 18 C 0.028 3.972 19 N -0.329 5.329 20 C -0.347 4.347 21 H 0.099 0.901 22 C -0.204 4.204 23 N -0.569 5.569 24 Si 0.743 3.257 25 H -0.215 1.215 26 H -0.217 1.217 27 H -0.207 1.207 28 C 0.009 3.991 29 C -0.026 4.026 30 H 0.067 0.933 31 H 0.073 0.927 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.100 0.900 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.076 0.924 39 H 0.108 0.892 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.119 0.881 46 H 0.093 0.907 47 H 0.049 0.951 48 H 0.063 0.937 49 H 0.067 0.933 50 H 0.074 0.926 51 H 0.119 0.881 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -18.484 -5.441 -4.412 19.767 hybrid contribution 1.584 0.400 0.077 1.635 sum -16.901 -5.040 -4.335 18.161 Atomic orbital electron populations 1.21731 0.94961 1.01765 1.00811 1.23074 0.94550 0.99659 0.88983 0.88830 1.22573 0.96184 0.99413 0.97192 1.22791 0.97702 1.01450 0.94846 1.22267 0.88395 0.97810 0.94624 0.90306 1.22950 0.97934 1.04984 0.99594 1.64041 1.27760 1.23299 1.07105 1.22614 0.99823 0.91555 0.97045 1.21745 0.80369 0.83857 0.86081 1.90612 1.52651 1.79304 1.18286 1.48366 1.53040 1.20532 1.12066 1.22469 0.97897 1.03073 0.81650 1.22869 0.92803 0.89932 0.97497 1.87939 1.73943 1.35153 1.28888 1.23680 0.91771 1.01587 0.82137 1.22650 0.84124 0.91617 0.98807 1.45776 1.12739 1.01359 1.73012 1.18997 0.88141 0.92844 1.34698 0.90131 1.24761 0.98593 0.95143 1.01866 1.69811 1.36255 0.97466 1.53398 0.86115 0.83833 0.77046 0.78732 1.21524 1.21679 1.20667 1.22492 0.85733 0.93726 0.97158 1.22247 0.93249 0.87547 0.99517 0.93260 0.92740 0.92434 0.91401 0.91650 0.90046 0.91935 0.92524 0.92355 0.89152 0.86924 0.88417 0.89145 0.90553 0.92093 0.88082 0.90652 0.95083 0.93731 0.93326 0.92619 0.88140 0.91458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.31 9.59 37.16 0.36 -0.95 16 2 C 0.04 0.52 2.41 -66.19 -0.16 0.36 16 3 H 0.09 1.31 4.72 -52.01 -0.25 1.07 16 4 C -0.12 -1.30 6.49 -24.60 -0.16 -1.46 16 5 C -0.13 -1.60 5.94 -24.91 -0.15 -1.75 16 6 C 0.08 0.95 3.72 -66.73 -0.25 0.70 16 7 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 8 C -0.20 -2.72 7.71 37.16 0.29 -2.43 16 9 N -0.50 -5.87 5.07 -216.96 -1.10 -6.97 16 10 C 0.02 0.23 3.97 -4.98 -0.02 0.21 16 11 C 0.49 6.69 5.16 -10.99 -0.06 6.63 16 12 O -0.53 -8.51 9.12 5.56 0.05 -8.46 16 13 N -0.61 -8.25 3.03 -172.45 -0.52 -8.77 16 14 C 0.07 0.79 6.46 -3.58 -0.02 0.77 16 15 C 0.05 0.66 6.88 37.27 0.26 0.92 16 16 O -0.34 -6.38 10.52 -35.23 -0.37 -6.75 16 17 C 0.05 0.95 1.21 -90.31 -0.11 0.84 16 18 C 0.15 3.66 6.65 -3.17 -0.02 3.64 16 19 N -0.60 -15.72 3.70 -180.30 -0.67 -16.38 16 20 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 21 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 22 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 23 N -0.92 -27.55 11.39 55.49 0.63 -26.92 16 24 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 25 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 27 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 28 C 0.14 2.80 8.33 -3.17 -0.03 2.78 16 29 C 0.10 1.53 5.78 -3.65 -0.02 1.51 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.67 8.06 -51.93 -0.42 0.25 16 35 H 0.08 1.19 6.76 -51.93 -0.35 0.84 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.72 5.83 -51.93 -0.30 0.42 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.09 1.49 4.19 -51.93 -0.22 1.27 16 40 H 0.11 1.17 5.55 -51.93 -0.29 0.88 16 41 H 0.10 0.88 7.68 -51.93 -0.40 0.49 16 42 H 0.09 0.73 6.05 -51.93 -0.31 0.42 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.06 0.98 7.19 -51.93 -0.37 0.60 16 45 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 46 H 0.08 2.00 6.30 -51.93 -0.33 1.67 16 47 H 0.03 0.78 7.94 -51.93 -0.41 0.37 16 48 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 49 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 50 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.10 1.72 6.91 -51.93 -0.36 1.36 16 52 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 LS Contribution 381.16 15.07 5.74 5.74 Total: -1.00 -32.69 381.16 -10.23 -42.92 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -8.62 Total: 3.17 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.35 Total: 5.04 kcal Atomic # 7 Polarization: -57.39 SS G_CDS: -1.66 Total: -59.04 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.32 Total: -15.21 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -32.69 -10.23 -42.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053541074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.427 kcal (2) G-P(sol) polarization free energy of solvation -32.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds