Wall clock time and date at job start Tue Mar 31 2020 21:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 110.42197 * 2 1 4 4 C 1.54905 * 110.37741 * 237.68919 * 2 1 3 5 5 C 1.55134 * 101.65895 * 204.09910 * 4 2 1 6 6 C 1.54322 * 103.01581 * 35.64823 * 5 4 2 7 7 H 1.08998 * 109.88648 * 97.13051 * 6 5 4 8 8 C 1.53000 * 109.88931 * 218.30999 * 6 5 4 9 9 N 1.47436 * 107.23724 * 337.71914 * 6 5 4 10 10 C 1.46900 * 111.00045 * 236.74170 * 9 6 5 11 11 C 1.50700 * 109.47038 * 72.29835 * 10 9 6 12 12 O 1.21278 * 120.00037 * 353.75925 * 11 10 9 13 13 N 1.34776 * 119.99663 * 173.75688 * 11 10 9 14 14 C 1.47125 * 121.05465 * 0.02562 * 13 11 10 15 15 C 1.53226 * 108.73334 * 127.80858 * 14 13 11 16 16 O 1.43115 * 109.34326 * 54.12040 * 15 14 13 17 17 C 1.42490 * 113.96287 * 300.02905 * 16 15 14 18 18 C 1.53466 * 113.76318 * 286.84694 * 17 16 15 19 19 N 1.47674 * 85.96866 * 268.71326 * 18 17 16 20 20 C 1.36938 * 134.45988 * 155.72220 * 19 18 17 21 21 H 1.07993 * 120.00224 * 179.97438 * 20 19 18 22 22 C 1.38815 * 119.99589 * 359.97438 * 20 19 18 23 23 N 1.31620 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86803 * 119.99698 * 179.97438 * 22 20 19 25 25 H 1.48508 * 109.46829 * 90.00354 * 24 22 20 26 26 H 1.48505 * 109.46869 * 209.99938 * 24 22 20 27 27 H 1.48495 * 109.47292 * 330.00337 * 24 22 20 28 28 C 1.47680 * 91.08659 * 335.70714 * 19 18 17 29 29 C 1.47342 * 121.04988 * 180.02562 * 13 11 10 30 30 H 1.08998 * 109.46956 * 301.39051 * 1 2 3 31 31 H 1.08994 * 109.47350 * 61.39818 * 1 2 3 32 32 H 1.09007 * 109.46923 * 181.39632 * 1 2 3 33 33 H 1.09001 * 110.99149 * 86.00142 * 4 2 1 34 34 H 1.09005 * 111.02353 * 322.20477 * 4 2 1 35 35 H 1.09000 * 110.70627 * 277.27228 * 5 4 2 36 36 H 1.08996 * 110.71261 * 154.03375 * 5 4 2 37 37 H 1.08997 * 109.47301 * 170.58748 * 8 6 5 38 38 H 1.08997 * 109.47233 * 290.58850 * 8 6 5 39 39 H 1.09004 * 109.46949 * 50.58989 * 8 6 5 40 40 H 1.08997 * 109.47061 * 312.29688 * 10 9 6 41 41 H 1.09001 * 109.47075 * 192.29619 * 10 9 6 42 42 H 1.08994 * 109.59194 * 8.03624 * 14 13 11 43 43 H 1.08994 * 109.59031 * 247.58255 * 14 13 11 44 44 H 1.09004 * 109.49348 * 294.16104 * 15 14 13 45 45 H 1.09002 * 109.49195 * 174.08019 * 15 14 13 46 46 H 1.09000 * 113.79446 * 22.97121 * 18 17 16 47 47 H 1.09001 * 113.79552 * 154.45126 * 18 17 16 48 48 H 0.96994 * 119.99945 * 179.97438 * 23 22 20 49 49 H 1.09000 * 113.78851 * 270.03377 * 28 19 18 50 50 H 1.08995 * 113.78978 * 138.56246 * 28 19 18 51 51 H 1.09003 * 109.75048 * 348.00646 * 29 13 11 52 52 H 1.09004 * 109.74355 * 108.68752 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9103 1.0215 0.0000 4 6 2.0693 -0.7762 -1.2273 5 6 3.4786 -1.1994 -0.7359 6 6 3.2536 -1.4806 0.7647 7 1 3.1057 -2.5487 0.9237 8 6 4.4584 -0.9931 1.5720 9 7 2.0448 -0.7408 1.1713 10 6 2.3358 0.1717 2.2851 11 6 3.1507 1.3351 1.7816 12 8 3.5549 1.3425 0.6381 13 7 3.4304 2.3672 2.6019 14 6 2.9522 2.3818 3.9933 15 6 4.1428 2.6493 4.9199 16 8 4.8076 3.8466 4.5042 17 6 5.3111 3.7963 3.1721 18 6 6.5522 2.9077 3.0133 19 7 7.3343 4.1326 3.2751 20 6 8.5911 4.3833 3.7575 21 1 8.9386 5.4011 3.8563 22 6 9.4185 3.3292 4.1197 23 7 8.9949 2.0888 3.9999 24 14 11.1332 3.6711 4.7772 25 1 11.0782 3.8097 6.2548 26 1 12.0342 2.5464 4.4187 27 1 11.6503 4.9290 4.1810 28 6 6.2181 4.9790 2.8075 29 6 4.2245 3.5165 2.1338 30 1 -0.3633 0.5353 0.8772 31 1 -0.3634 0.4919 -0.9022 32 1 -0.3633 -1.0274 0.0250 33 1 2.1388 -0.1270 -2.1001 34 1 1.4518 -1.6488 -1.4404 35 1 4.1942 -0.3887 -0.8729 36 1 3.8120 -2.1003 -1.2510 37 1 4.2259 -1.0400 2.6359 38 1 5.3188 -1.6277 1.3598 39 1 4.6887 0.0358 1.2955 40 1 2.8975 -0.3600 3.0532 41 1 1.4006 0.5391 2.7077 42 1 2.5086 1.4167 4.2375 43 1 2.2092 3.1698 4.1161 44 1 4.8381 1.8113 4.8701 45 1 3.7876 2.7673 5.9437 46 1 6.6516 2.1484 3.7891 47 1 6.6822 2.5095 2.0070 48 1 9.5732 1.3523 4.2526 49 1 6.2487 5.1969 1.7400 50 1 6.0521 5.8654 3.4197 51 1 4.6844 3.2801 1.1742 52 1 3.5813 4.3902 2.0285 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053541074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:33:08 Heat of formation + Delta-G solvation = 5.174390 kcal Electronic energy + Delta-G solvation = -32359.525691 eV Core-core repulsion = 28361.817952 eV Total energy + Delta-G solvation = -3997.707740 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.33885 -41.11598 -38.95937 -37.69438 -35.73610 -34.34210 -33.87496 -33.09812 -31.49772 -29.51642 -29.04719 -28.49265 -26.90571 -26.50735 -24.69739 -24.59437 -23.52507 -21.84835 -21.19487 -20.42622 -19.69253 -18.85889 -18.43373 -17.76130 -17.31504 -17.07683 -16.89748 -16.66388 -16.02264 -15.75300 -15.62698 -15.50756 -15.15110 -14.93004 -14.77474 -14.39995 -14.17947 -13.99783 -13.90554 -13.75956 -13.38398 -13.22908 -13.05114 -12.90453 -12.79343 -12.57684 -12.56766 -12.51569 -12.28451 -12.07990 -11.97616 -11.86435 -11.77004 -11.66333 -11.49009 -11.36746 -11.26455 -10.98863 -10.93010 -10.77151 -9.53095 -9.14924 -8.97371 -7.94010 -5.28378 1.41536 1.44350 1.52528 1.53324 1.89037 2.43000 2.64128 2.92447 3.23822 3.31618 3.49683 3.62052 3.72267 3.77941 3.80840 3.97822 4.06380 4.14734 4.24895 4.32584 4.33759 4.43178 4.45549 4.48253 4.59431 4.60003 4.60795 4.65829 4.68108 4.74450 4.79245 4.85196 4.87313 4.90799 4.95069 5.03600 5.04238 5.09675 5.18873 5.20703 5.23121 5.27816 5.31434 5.42788 5.51543 5.54141 5.85798 5.98582 6.04700 6.32762 6.38986 6.85727 7.11621 7.55385 8.48504 9.22353 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016683 B = 0.003448 C = 0.003156 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.949901 B = 8118.285220 C = 8870.578584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.043 3.957 3 H 0.071 0.929 4 C -0.113 4.113 5 C -0.131 4.131 6 C 0.078 3.922 7 H 0.092 0.908 8 C -0.192 4.192 9 N -0.494 5.494 10 C 0.024 3.976 11 C 0.487 3.513 12 O -0.557 6.557 13 N -0.611 5.611 14 C 0.078 3.922 15 C 0.039 3.961 16 O -0.363 6.363 17 C 0.081 3.919 18 C 0.157 3.843 19 N -0.635 5.635 20 C -0.235 4.235 21 H 0.086 0.914 22 C -0.067 4.067 23 N -0.954 5.954 24 Si 0.981 3.019 25 H -0.283 1.283 26 H -0.295 1.295 27 H -0.268 1.268 28 C 0.132 3.868 29 C 0.110 3.890 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.074 0.926 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.121 0.879 41 H 0.129 0.871 42 H 0.126 0.874 43 H 0.103 0.897 44 H 0.032 0.968 45 H 0.133 0.867 46 H 0.040 0.960 47 H 0.006 0.994 48 H 0.247 0.753 49 H 0.068 0.932 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.346 -5.023 -3.508 22.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.064 4.064 3 H 0.089 0.911 4 C -0.151 4.151 5 C -0.169 4.169 6 C -0.030 4.030 7 H 0.110 0.890 8 C -0.250 4.250 9 N -0.216 5.216 10 C -0.107 4.107 11 C 0.277 3.723 12 O -0.438 6.438 13 N -0.345 5.345 14 C -0.044 4.044 15 C -0.038 4.038 16 O -0.282 6.282 17 C 0.039 3.961 18 C 0.031 3.969 19 N -0.361 5.361 20 C -0.363 4.363 21 H 0.103 0.897 22 C -0.260 4.260 23 N -0.603 5.603 24 Si 0.809 3.191 25 H -0.210 1.210 26 H -0.221 1.221 27 H -0.192 1.192 28 C 0.007 3.993 29 C -0.015 4.015 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.139 0.861 41 H 0.147 0.853 42 H 0.144 0.856 43 H 0.121 0.879 44 H 0.050 0.950 45 H 0.151 0.849 46 H 0.058 0.942 47 H 0.024 0.976 48 H 0.056 0.944 49 H 0.086 0.914 50 H 0.084 0.916 51 H 0.098 0.902 52 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -21.206 -5.291 -3.682 22.164 hybrid contribution 2.429 0.369 -0.151 2.461 sum -18.777 -4.922 -3.832 19.786 Atomic orbital electron populations 1.21673 0.92997 1.02305 1.01570 1.23058 0.95973 0.98339 0.89045 0.91109 1.22584 0.95451 0.99917 0.97099 1.22748 0.97888 1.00834 0.95459 1.22280 0.88047 0.98525 0.94105 0.88983 1.22875 0.98612 1.03011 1.00460 1.64144 1.26902 1.23260 1.07304 1.22760 1.00793 0.90288 0.96871 1.22303 0.80158 0.84147 0.85716 1.90622 1.53671 1.79712 1.19809 1.48471 1.52770 1.19936 1.13315 1.22641 0.96629 1.06050 0.79035 1.23178 0.93178 0.87324 1.00124 1.87890 1.74489 1.37318 1.28492 1.23134 0.91215 0.98114 0.83656 1.22457 0.87356 0.91055 0.96043 1.46186 1.13073 1.03462 1.73396 1.19432 0.89463 0.93186 1.34206 0.89672 1.25649 1.02590 0.94986 1.02778 1.70024 1.37336 0.98187 1.54787 0.85047 0.78966 0.77056 0.78064 1.21005 1.22109 1.19233 1.22722 0.84193 0.94262 0.98154 1.21930 0.92871 0.89526 0.97144 0.92551 0.92018 0.91913 0.91633 0.90077 0.93179 0.90781 0.91580 0.93175 0.92039 0.86100 0.85322 0.85613 0.87898 0.94998 0.84928 0.94177 0.97630 0.94409 0.91432 0.91634 0.90153 0.88795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.11 9.59 71.98 0.69 -1.42 16 2 C 0.04 0.94 2.41 45.38 0.11 1.05 16 3 H 0.07 1.93 4.72 -3.65 -0.02 1.91 16 4 C -0.11 -2.41 6.49 31.98 0.21 -2.21 16 5 C -0.13 -3.24 5.94 31.77 0.19 -3.05 16 6 C 0.08 1.87 3.72 45.26 0.17 2.03 16 7 H 0.09 1.98 8.14 -2.39 -0.02 1.96 16 8 C -0.19 -5.40 7.71 71.98 0.56 -4.84 16 9 N -0.49 -10.57 5.07 -840.33 -4.26 -14.83 16 10 C 0.02 0.47 3.97 85.56 0.34 0.81 16 11 C 0.49 12.82 5.16 87.66 0.45 13.27 16 12 O -0.56 -18.30 9.12 -3.02 -0.03 -18.33 16 13 N -0.61 -15.77 3.03 -817.89 -2.48 -18.24 16 14 C 0.08 1.47 6.46 86.34 0.56 2.03 16 15 C 0.04 1.04 6.88 72.06 0.50 1.53 16 16 O -0.36 -13.35 10.52 -148.98 -1.57 -14.91 16 17 C 0.08 3.09 1.21 -10.50 -0.01 3.08 16 18 C 0.16 7.87 6.65 86.31 0.57 8.44 16 19 N -0.63 -34.15 3.70 -729.23 -2.70 -36.85 16 20 C -0.23 -13.71 10.70 84.03 0.90 -12.81 16 21 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 23 N -0.95 -59.53 11.39 21.65 0.25 -59.29 16 24 Si 0.98 47.06 29.55 68.60 2.03 49.08 16 25 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 26 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 27 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 28 C 0.13 5.48 8.33 86.30 0.72 6.20 16 29 C 0.11 3.37 5.78 86.18 0.50 3.87 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.06 0.99 8.14 -2.38 -0.02 0.97 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.08 1.49 8.06 -2.38 -0.02 1.47 16 35 H 0.05 1.55 6.76 -2.39 -0.02 1.54 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 37 H 0.07 1.67 5.83 -2.39 -0.01 1.66 16 38 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.06 2.13 4.19 -2.39 -0.01 2.12 16 40 H 0.12 2.19 5.55 -2.39 -0.01 2.18 16 41 H 0.13 1.74 7.68 -2.39 -0.02 1.73 16 42 H 0.13 1.49 6.05 -2.39 -0.01 1.47 16 43 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 44 H 0.03 1.04 7.19 -2.39 -0.02 1.02 16 45 H 0.13 2.67 8.14 -2.39 -0.02 2.65 16 46 H 0.04 2.27 6.30 -2.39 -0.02 2.26 16 47 H 0.01 0.32 7.94 -2.39 -0.02 0.30 16 48 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 49 H 0.07 2.56 8.09 -2.39 -0.02 2.55 16 50 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 51 H 0.08 2.82 6.91 -2.39 -0.02 2.81 16 52 H 0.09 2.43 8.14 -2.38 -0.02 2.41 16 Total: -1.00 -75.31 381.16 -0.94 -76.25 By element: Atomic # 1 Polarization: 21.74 SS G_CDS: 0.90 Total: 22.64 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: 6.91 Total: 14.49 kcal Atomic # 7 Polarization: -120.03 SS G_CDS: -9.19 Total: -129.21 kcal Atomic # 8 Polarization: -31.65 SS G_CDS: -1.59 Total: -33.24 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.08 kcal Total: -75.31 -0.94 -76.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053541074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.423 kcal (2) G-P(sol) polarization free energy of solvation -75.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds