Wall clock time and date at job start Tue Mar 31 2020 21:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.53043 * 109.46215 * 2 1 4 4 C 1.53191 * 109.31233 * 181.38734 * 3 2 1 5 5 N 1.46926 * 108.77753 * 305.36134 * 4 3 2 6 6 C 1.34773 * 120.63468 * 233.58797 * 5 4 3 7 7 O 1.21343 * 120.00067 * 171.52744 * 6 5 4 8 8 C 1.49455 * 120.00058 * 351.53108 * 6 5 4 9 9 O 1.21359 * 119.99568 * 353.10416 * 8 6 5 10 10 N 1.34768 * 120.00140 * 173.10138 * 8 6 5 11 11 C 1.46501 * 119.99793 * 179.97438 * 10 8 6 12 12 H 1.08997 * 109.49701 * 34.94574 * 11 10 8 13 13 C 1.53052 * 109.49475 * 155.00612 * 11 10 8 14 14 C 1.53037 * 109.53686 * 58.58765 * 13 11 10 15 15 C 1.53187 * 109.31234 * 61.36712 * 14 13 11 16 16 H 1.09001 * 109.58850 * 65.15266 * 15 14 13 17 17 C 1.53007 * 109.58800 * 185.57618 * 15 14 13 18 18 N 1.46926 * 108.77553 * 305.36072 * 15 14 13 19 19 C 1.36943 * 120.63277 * 233.61057 * 18 15 14 20 20 H 1.08000 * 119.99880 * 51.88514 * 19 18 15 21 21 C 1.38811 * 119.99858 * 231.89398 * 19 18 15 22 22 N 1.31619 * 119.99817 * 177.61464 * 21 19 18 23 23 Si 1.86797 * 120.00160 * 357.61565 * 21 19 18 24 24 H 1.48491 * 109.47349 * 89.20255 * 23 21 19 25 25 H 1.48502 * 109.47038 * 209.20638 * 23 21 19 26 26 H 1.48505 * 109.46861 * 329.19702 * 23 21 19 27 27 C 1.46928 * 118.73673 * 53.61431 * 18 15 14 28 28 C 1.46933 * 118.73572 * 53.61198 * 5 4 3 29 29 C 1.53041 * 109.46194 * 120.06747 * 2 1 3 30 30 H 1.09005 * 109.47479 * 60.00082 * 1 2 3 31 31 H 1.09005 * 109.47479 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47243 * 299.99996 * 1 2 3 33 33 H 1.09002 * 109.45128 * 240.03243 * 2 1 3 34 34 H 1.08995 * 109.49707 * 61.43697 * 3 2 1 35 35 H 1.09001 * 109.49635 * 301.33468 * 3 2 1 36 36 H 1.08998 * 109.58646 * 65.15566 * 4 3 2 37 37 H 1.09009 * 109.58373 * 185.43585 * 4 3 2 38 38 H 0.96998 * 120.00194 * 0.02562 * 10 8 6 39 39 H 1.09001 * 109.45655 * 178.60957 * 13 11 10 40 40 H 1.08998 * 109.45547 * 298.56943 * 13 11 10 41 41 H 1.08999 * 109.49663 * 181.31844 * 14 13 11 42 42 H 1.09000 * 109.49611 * 301.41119 * 14 13 11 43 43 H 1.08997 * 109.46960 * 59.99490 * 17 15 14 44 44 H 1.08998 * 109.47643 * 179.97438 * 17 15 14 45 45 H 1.09002 * 109.46586 * 300.00240 * 17 15 14 46 46 H 0.97001 * 119.99839 * 179.97438 * 22 21 19 47 47 H 1.09001 * 109.58406 * 186.60587 * 27 18 15 48 48 H 1.08995 * 109.58624 * 66.17772 * 27 18 15 49 49 H 1.08999 * 109.58687 * 66.17887 * 28 5 4 50 50 H 1.08995 * 109.58296 * 186.60465 * 28 5 4 51 51 H 1.09001 * 109.49760 * 58.66279 * 29 2 1 52 52 H 1.08992 * 109.52281 * 298.58395 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0398 1.4430 0.0000 4 6 3.5713 1.4391 -0.0350 5 7 4.0679 0.6238 1.0818 6 6 4.9621 1.1274 1.9554 7 8 5.2486 0.5051 2.9569 8 6 5.6008 2.4524 1.6906 9 8 5.4114 3.0167 0.6330 10 7 6.3868 3.0206 2.6263 11 6 7.0133 4.3191 2.3665 12 1 6.3405 4.9346 1.7694 13 6 7.3038 5.0211 3.6952 14 6 8.2214 4.1423 4.5483 15 6 9.5484 3.9315 3.8126 16 1 10.0699 4.8842 3.7193 17 6 10.4165 2.9428 4.5936 18 7 9.2673 3.3908 2.4758 19 6 9.8705 2.2381 2.0483 20 1 9.8306 1.3489 2.6599 21 6 10.5334 2.2127 0.8290 22 7 11.1532 1.1187 0.4396 23 14 10.5461 3.7309 -0.2592 24 1 11.7100 4.5829 0.0933 25 1 10.6469 3.3191 -1.6824 26 1 9.2909 4.4976 -0.0536 27 6 8.3267 4.1104 1.6061 28 6 3.5713 -0.7514 1.2280 29 6 2.0398 -0.7230 1.2488 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8929 -0.5134 -0.8904 34 1 1.6978 1.9497 0.9024 35 1 1.6572 1.9640 -0.8776 36 1 3.9142 1.0143 -0.9784 37 1 3.9416 2.4598 0.0621 38 1 6.5384 2.5694 3.4715 39 1 7.7923 5.9762 3.5020 40 1 6.3681 5.1929 4.2272 41 1 8.4089 4.6322 5.5038 42 1 7.7439 3.1778 4.7210 43 1 9.8944 1.9899 4.6794 44 1 11.3599 2.7938 4.0684 45 1 10.6133 3.3401 5.5894 46 1 11.6161 1.1009 -0.4127 47 1 8.1389 3.5240 0.7067 48 1 8.7485 5.0775 1.3329 49 1 3.9142 -1.3549 0.3876 50 1 3.9416 -1.1763 2.1609 51 1 1.6572 -1.7435 1.2600 52 1 1.6977 -0.1964 2.1397 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071881344.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:31:17 Heat of formation + Delta-G solvation = -55.908176 kcal Electronic energy + Delta-G solvation = -31644.123969 eV Core-core repulsion = 27643.767491 eV Total energy + Delta-G solvation = -4000.356478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -42.07810 -40.50561 -39.16648 -38.80219 -36.06191 -34.91554 -34.41124 -32.67447 -32.27226 -32.14593 -29.49534 -28.11564 -26.84015 -25.93189 -24.36684 -24.29489 -23.52983 -22.09023 -21.75540 -20.61374 -20.59962 -18.84392 -18.52396 -17.93204 -17.39083 -17.08425 -16.62336 -16.44059 -15.87907 -15.68382 -15.59133 -15.28628 -15.08999 -15.05174 -14.95260 -14.52726 -14.43308 -14.34286 -14.18439 -13.90249 -13.63664 -13.33730 -13.11591 -12.80837 -12.73080 -12.72202 -12.61587 -12.51389 -12.40851 -12.21066 -12.10960 -11.85428 -11.65387 -11.55739 -11.45422 -11.35164 -11.25851 -11.15647 -10.59202 -10.25499 -9.97337 -9.81872 -8.42012 -8.10431 -5.76414 0.34577 1.32213 1.36960 1.41619 1.46341 2.11106 2.46790 2.51757 3.17749 3.30628 3.32067 3.78910 3.83080 3.86961 3.92038 4.03947 4.09492 4.13619 4.29264 4.35224 4.39694 4.52933 4.58421 4.61876 4.70402 4.75188 4.76247 4.80957 4.85605 4.88279 4.93520 4.97647 5.02164 5.04730 5.06749 5.08254 5.12727 5.15056 5.22105 5.28563 5.35765 5.37235 5.50138 5.56164 5.58319 5.65602 5.96642 6.02968 6.26159 6.31279 6.69983 6.97055 7.08575 7.64243 8.14915 9.02768 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.014439 B = 0.003579 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.668917 B = 7820.662675 C = 8352.761903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.094 4.094 3 C -0.121 4.121 4 C 0.065 3.935 5 N -0.578 5.578 6 C 0.502 3.498 7 O -0.552 6.552 8 C 0.504 3.496 9 O -0.535 6.535 10 N -0.665 5.665 11 C 0.124 3.876 12 H 0.098 0.902 13 C -0.110 4.110 14 C -0.126 4.126 15 C 0.160 3.840 16 H 0.044 0.956 17 C -0.125 4.125 18 N -0.611 5.611 19 C -0.235 4.235 20 H 0.030 0.970 21 C -0.021 4.021 22 N -0.963 5.963 23 Si 0.905 3.095 24 H -0.289 1.289 25 H -0.317 1.317 26 H -0.188 1.188 27 C 0.121 3.879 28 C 0.099 3.901 29 C -0.118 4.118 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.127 0.873 38 H 0.410 0.590 39 H 0.095 0.905 40 H 0.088 0.912 41 H 0.094 0.906 42 H 0.048 0.952 43 H 0.032 0.968 44 H 0.029 0.971 45 H 0.077 0.923 46 H 0.257 0.743 47 H 0.038 0.962 48 H 0.053 0.947 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.096 0.904 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.629 5.221 3.569 22.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.113 4.113 3 C -0.159 4.159 4 C -0.056 4.056 5 N -0.311 5.311 6 C 0.285 3.715 7 O -0.430 6.430 8 C 0.285 3.715 9 O -0.415 6.415 10 N -0.315 5.315 11 C 0.019 3.981 12 H 0.116 0.884 13 C -0.148 4.148 14 C -0.165 4.165 15 C 0.055 3.945 16 H 0.061 0.939 17 C -0.183 4.183 18 N -0.337 5.337 19 C -0.365 4.365 20 H 0.047 0.953 21 C -0.217 4.217 22 N -0.608 5.608 23 Si 0.732 3.268 24 H -0.216 1.216 25 H -0.246 1.246 26 H -0.111 1.111 27 C -0.005 4.005 28 C -0.022 4.022 29 C -0.156 4.156 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.072 0.928 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.247 0.753 39 H 0.114 0.886 40 H 0.107 0.893 41 H 0.113 0.887 42 H 0.066 0.934 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.096 0.904 46 H 0.066 0.934 47 H 0.057 0.943 48 H 0.071 0.929 49 H 0.098 0.902 50 H 0.097 0.903 51 H 0.114 0.886 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -21.516 5.233 3.263 22.382 hybrid contribution 1.075 -0.607 -0.707 1.423 sum -20.441 4.626 2.556 21.113 Atomic orbital electron populations 1.21771 0.93555 1.02363 1.02121 1.21179 0.96807 0.95357 0.97961 1.21972 0.93143 0.97535 1.03210 1.22918 0.95583 0.99342 0.87773 1.48080 1.40160 1.15131 1.27735 1.20277 0.80646 0.87031 0.83534 1.90711 1.62795 1.61868 1.27634 1.20126 0.80730 0.85962 0.84634 1.90448 1.62086 1.64306 1.24703 1.45820 1.45246 1.21741 1.18707 1.21800 0.94249 0.82837 0.99233 0.88422 1.21714 1.00866 0.98955 0.93238 1.22001 0.95731 0.99551 0.99244 1.20849 0.94366 0.95165 0.84085 0.93870 1.21657 0.98972 0.98653 0.98990 1.44374 1.48724 1.26111 1.14535 1.18297 1.26094 0.88846 1.03266 0.95260 1.26503 0.95163 0.99147 1.00862 1.69954 1.37938 1.30396 1.22462 0.86889 0.81947 0.81761 0.76166 1.21635 1.24576 1.11101 1.22150 0.89388 0.95921 0.92993 1.21927 0.96023 0.81106 1.03166 1.21926 0.92428 1.02499 0.98733 0.91869 0.91827 0.92843 0.90549 0.92078 0.88893 0.91381 0.85568 0.75264 0.88614 0.89331 0.88730 0.93355 0.94903 0.95142 0.90434 0.93420 0.94349 0.92900 0.90195 0.90311 0.88556 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.19 71.98 0.66 -0.94 16 2 C -0.09 -1.41 2.68 -10.77 -0.03 -1.43 16 3 C -0.12 -2.11 5.36 30.67 0.16 -1.94 16 4 C 0.06 1.59 5.98 86.36 0.52 2.10 16 5 N -0.58 -16.61 2.97 -820.46 -2.44 -19.05 16 6 C 0.50 17.76 7.73 87.27 0.67 18.43 16 7 O -0.55 -21.96 15.93 -3.23 -0.05 -22.01 16 8 C 0.50 18.12 7.71 87.27 0.67 18.79 16 9 O -0.54 -19.79 12.84 -3.27 -0.04 -19.83 16 10 N -0.66 -22.52 4.91 -443.48 -2.18 -24.70 16 11 C 0.12 3.83 2.81 45.07 0.13 3.96 16 12 H 0.10 2.81 7.58 -2.39 -0.02 2.79 16 13 C -0.11 -2.55 5.59 30.62 0.17 -2.38 16 14 C -0.13 -3.35 5.21 30.67 0.16 -3.19 16 15 C 0.16 5.67 3.50 44.98 0.16 5.83 16 16 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 17 C -0.13 -4.65 8.18 71.98 0.59 -4.06 16 18 N -0.61 -27.09 2.41 -675.23 -1.63 -28.73 16 19 C -0.23 -13.21 8.37 84.03 0.70 -12.51 16 20 H 0.03 1.91 7.23 -2.91 -0.02 1.88 16 21 C -0.02 -1.26 5.47 84.86 0.46 -0.80 16 22 N -0.96 -62.71 13.97 21.65 0.30 -62.41 16 23 Si 0.90 45.06 26.35 68.60 1.81 46.86 16 24 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 25 H -0.32 -16.56 7.11 99.48 0.71 -15.86 16 26 H -0.19 -8.13 3.62 99.48 0.36 -7.77 16 27 C 0.12 4.81 3.48 86.36 0.30 5.12 16 28 C 0.10 2.34 6.44 86.36 0.56 2.90 16 29 C -0.12 -1.98 5.36 30.67 0.16 -1.82 16 30 H 0.06 0.64 8.14 -2.38 -0.02 0.62 16 31 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 32 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 33 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.13 3.60 4.32 -47.45 -0.20 3.40 16 38 H 0.41 13.98 6.26 -92.71 -0.58 13.40 16 39 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 40 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.05 1.42 6.40 -2.39 -0.02 1.40 16 43 H 0.03 1.33 7.46 -2.39 -0.02 1.31 16 44 H 0.03 1.30 7.71 -2.39 -0.02 1.29 16 45 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 47 H 0.04 1.80 6.00 -2.39 -0.01 1.78 16 48 H 0.05 1.98 6.53 -2.39 -0.02 1.96 16 49 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 50 H 0.08 2.12 7.00 -2.39 -0.02 2.10 16 51 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 52 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -74.04 387.21 1.61 -72.43 By element: Atomic # 1 Polarization: 29.60 SS G_CDS: -0.21 Total: 29.39 kcal Atomic # 6 Polarization: 22.00 SS G_CDS: 6.05 Total: 28.05 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -5.94 Total: -134.89 kcal Atomic # 8 Polarization: -41.75 SS G_CDS: -0.09 Total: -41.85 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 1.81 Total: 46.86 kcal Total: -74.04 1.61 -72.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071881344.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.521 kcal (2) G-P(sol) polarization free energy of solvation -74.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds