Wall clock time and date at job start Tue Mar 31 2020 21:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00105 * 2 1 4 4 N 1.34781 * 120.00204 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62980 * 354.97627 * 4 2 1 6 6 C 1.53195 * 108.77369 * 233.63320 * 5 4 2 7 7 C 1.53035 * 109.30925 * 305.35978 * 6 5 4 8 8 C 1.50704 * 109.46007 * 181.38531 * 7 6 5 9 9 O 1.21277 * 119.99657 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99760 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.50096 * 34.93438 * 11 10 8 13 13 C 1.53041 * 109.49822 * 155.00213 * 11 10 8 14 14 C 1.53046 * 109.53941 * 181.31409 * 13 11 10 15 15 C 1.53198 * 109.31191 * 298.63337 * 14 13 11 16 16 H 1.09003 * 109.58444 * 294.85166 * 15 14 13 17 17 C 1.52993 * 109.58601 * 174.41949 * 15 14 13 18 18 N 1.46923 * 108.77425 * 54.62973 * 15 14 13 19 19 C 1.36940 * 120.62724 * 126.39038 * 18 15 14 20 20 H 1.08000 * 120.00278 * 330.16315 * 19 18 15 21 21 C 1.38816 * 120.00060 * 150.16507 * 19 18 15 22 22 N 1.31617 * 120.00016 * 347.55421 * 21 19 18 23 23 Si 1.86802 * 120.00216 * 167.55764 * 21 19 18 24 24 H 1.48503 * 109.47030 * 89.99840 * 23 21 19 25 25 H 1.48495 * 109.46837 * 209.99832 * 23 21 19 26 26 H 1.48503 * 109.47027 * 330.00092 * 23 21 19 27 27 C 1.46926 * 118.74646 * 306.39706 * 18 15 14 28 28 C 1.53047 * 109.52832 * 61.37543 * 7 6 5 29 29 C 1.46923 * 120.63020 * 174.99940 * 4 2 1 30 30 H 1.08997 * 109.47447 * 264.90123 * 1 2 3 31 31 H 1.09002 * 109.46915 * 24.90235 * 1 2 3 32 32 H 1.09000 * 109.47162 * 144.90055 * 1 2 3 33 33 H 1.08990 * 109.58716 * 113.84038 * 5 4 2 34 34 H 1.09003 * 109.69925 * 353.48268 * 5 4 2 35 35 H 1.09000 * 109.49377 * 185.41438 * 6 5 4 36 36 H 1.09000 * 109.52263 * 65.33029 * 6 5 4 37 37 H 1.08997 * 109.46406 * 301.36279 * 7 6 5 38 38 H 0.96998 * 120.00388 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.46204 * 61.29320 * 13 11 10 40 40 H 1.08997 * 109.46054 * 301.32903 * 13 11 10 41 41 H 1.08998 * 109.49715 * 178.68063 * 14 13 11 42 42 H 1.08996 * 109.49647 * 58.58016 * 14 13 11 43 43 H 1.09004 * 109.46857 * 60.00491 * 17 15 14 44 44 H 1.09005 * 109.46902 * 179.97438 * 17 15 14 45 45 H 1.08996 * 109.47616 * 299.99817 * 17 15 14 46 46 H 0.96993 * 120.00372 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.58230 * 293.81939 * 27 18 15 48 48 H 1.08997 * 109.59216 * 173.39489 * 27 18 15 49 49 H 1.09007 * 109.49324 * 58.57746 * 28 7 6 50 50 H 1.09000 * 109.49750 * 178.67180 * 28 7 6 51 51 H 1.09001 * 109.58119 * 246.15486 * 29 4 2 52 52 H 1.08995 * 109.58989 * 6.43820 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4646 -2.4452 0.1118 6 6 2.0608 -3.2450 1.2744 7 6 3.5707 -3.3867 1.0694 8 6 4.1558 -4.2021 2.1937 9 8 3.4362 -4.6274 3.0723 10 7 5.4785 -4.4586 2.2226 11 6 6.0471 -5.2517 3.3152 12 1 5.3339 -6.0185 3.6176 13 6 7.3424 -5.9164 2.8436 14 6 7.9200 -6.7715 3.9739 15 6 8.2454 -5.8743 5.1723 16 1 9.0412 -5.1797 4.9033 17 6 8.6921 -6.7382 6.3534 18 7 7.0387 -5.1216 5.5411 19 6 6.5635 -5.1507 6.8251 20 1 6.7212 -6.0247 7.4396 21 6 5.8791 -4.0568 7.3368 22 7 5.8956 -2.9096 6.6917 23 14 4.9348 -4.2127 8.9410 24 1 5.8284 -3.8708 10.0767 25 1 3.7763 -3.2839 8.9256 26 1 4.4491 -5.6075 9.0959 27 6 6.3513 -4.3373 4.5062 28 6 4.2175 -1.9996 1.0555 29 6 3.6459 -1.1858 -0.1097 30 1 -0.3634 -0.0913 1.0235 31 1 -0.3633 0.9321 -0.4327 32 1 -0.3633 -0.8408 -0.5909 33 1 1.5762 -3.0085 -0.8145 34 1 0.4074 -2.2586 0.3009 35 1 1.6038 -4.2340 1.3077 36 1 1.8682 -2.7234 2.2119 37 1 3.7630 -3.8865 0.1200 38 1 6.0541 -4.1181 1.5200 39 1 8.0638 -5.1485 2.5643 40 1 7.1329 -6.5486 1.9808 41 1 8.8299 -7.2630 3.6297 42 1 7.1893 -7.5239 4.2707 43 1 9.5800 -7.3051 6.0735 44 1 8.9236 -6.0980 7.2047 45 1 7.8914 -7.4267 6.6233 46 1 5.4177 -2.1451 7.0494 47 1 6.9927 -3.5174 4.1828 48 1 5.4199 -3.9387 4.9081 49 1 4.0044 -1.4895 1.9949 50 1 5.2957 -2.1022 0.9330 51 1 3.9354 -1.6465 -1.0542 52 1 4.0284 -0.1660 -0.0681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001072061534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:09 Heat of formation + Delta-G solvation = -61.778859 kcal Electronic energy + Delta-G solvation = -30867.538886 eV Core-core repulsion = 26866.927835 eV Total energy + Delta-G solvation = -4000.611050 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.71 seconds Orbital eigenvalues (eV) -40.54079 -39.46915 -37.86095 -36.90417 -34.40918 -33.35263 -32.78461 -31.59754 -30.69099 -29.84638 -29.50112 -26.52024 -25.56702 -24.78003 -23.36767 -22.29105 -21.85322 -20.59622 -19.89485 -19.32084 -19.02192 -17.48508 -16.63485 -16.41672 -16.07206 -15.66043 -15.59629 -15.02014 -14.80886 -14.12585 -14.00857 -13.98312 -13.78086 -13.58683 -13.47198 -13.37119 -13.19968 -12.88353 -12.60141 -12.37675 -12.34604 -12.22175 -12.01681 -11.77729 -11.44501 -11.40618 -11.11617 -10.91526 -10.87740 -10.77554 -10.69041 -10.50047 -10.38988 -10.25369 -9.97404 -9.94735 -9.73136 -9.44707 -9.29117 -8.84721 -8.50871 -8.39922 -6.58003 -5.71608 -3.17985 2.43789 2.78861 3.02954 3.41903 3.49500 3.51112 3.54590 4.34120 4.44338 4.54212 4.73266 4.73597 4.84556 4.94117 4.99654 5.07026 5.16184 5.25707 5.34142 5.37504 5.38158 5.45962 5.54808 5.56926 5.57987 5.61063 5.64528 5.72417 5.85369 5.97940 6.04413 6.10962 6.20269 6.27655 6.30733 6.32169 6.39546 6.46100 6.52161 6.63253 6.76185 6.97779 7.05131 7.13468 7.18418 7.35262 7.79020 7.86808 7.95644 7.97739 8.52978 8.67360 9.27165 9.90791 10.45995 11.36050 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.003130 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.094380 B = 8943.763883 C =10203.265832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.513 3.487 3 O -0.549 6.549 4 N -0.614 5.614 5 C 0.107 3.893 6 C -0.116 4.116 7 C -0.105 4.105 8 C 0.513 3.487 9 O -0.532 6.532 10 N -0.720 5.720 11 C 0.116 3.884 12 H 0.080 0.920 13 C -0.116 4.116 14 C -0.126 4.126 15 C 0.165 3.835 16 H 0.024 0.976 17 C -0.136 4.136 18 N -0.584 5.584 19 C -0.252 4.252 20 H 0.069 0.931 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.901 3.099 24 H -0.288 1.288 25 H -0.290 1.290 26 H -0.279 1.279 27 C 0.169 3.831 28 C -0.126 4.126 29 C 0.113 3.887 30 H 0.094 0.906 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.070 0.930 34 H 0.090 0.910 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.391 0.609 39 H 0.058 0.942 40 H 0.049 0.951 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.037 0.963 44 H 0.061 0.939 45 H 0.053 0.947 46 H 0.252 0.748 47 H 0.015 0.985 48 H 0.097 0.903 49 H 0.078 0.922 50 H 0.081 0.919 51 H 0.068 0.932 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.496 -1.587 -17.891 18.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.302 3.698 3 O -0.427 6.427 4 N -0.349 5.349 5 C -0.016 4.016 6 C -0.155 4.155 7 C -0.126 4.126 8 C 0.298 3.702 9 O -0.408 6.408 10 N -0.370 5.370 11 C 0.011 3.989 12 H 0.098 0.902 13 C -0.154 4.154 14 C -0.166 4.166 15 C 0.058 3.942 16 H 0.042 0.958 17 C -0.194 4.194 18 N -0.307 5.307 19 C -0.381 4.381 20 H 0.087 0.913 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.731 3.269 24 H -0.215 1.215 25 H -0.216 1.216 26 H -0.204 1.204 27 C 0.042 3.958 28 C -0.165 4.165 29 C -0.009 4.009 30 H 0.112 0.888 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.224 0.776 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.056 0.944 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.063 0.937 47 H 0.033 0.967 48 H 0.115 0.885 49 H 0.097 0.903 50 H 0.100 0.900 51 H 0.087 0.913 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.781 -1.188 -17.164 18.151 hybrid contribution -0.158 0.063 0.473 0.503 sum -5.939 -1.125 -16.691 17.752 Atomic orbital electron populations 1.21955 0.91882 1.04839 1.04788 1.20822 0.90666 0.83024 0.75283 1.90714 1.70746 1.31113 1.50093 1.48200 1.07420 1.06281 1.72976 1.21850 0.96840 0.83994 0.98905 1.21740 0.93546 1.01353 0.98823 1.21307 0.96686 0.96223 0.98433 1.20388 0.82480 0.80511 0.86813 1.90739 1.59678 1.51772 1.38580 1.46089 1.07885 1.55280 1.27767 1.21986 0.93907 0.95042 0.87988 0.90187 1.21677 0.96909 0.98930 0.97887 1.22048 0.99603 0.98520 0.96430 1.20489 0.89545 0.91920 0.92232 0.95805 1.21798 0.99091 0.99364 0.99123 1.44022 1.24855 1.55668 1.06200 1.19134 1.31714 0.97996 0.89305 0.91298 1.25099 1.01491 0.94806 0.97856 1.69962 1.44552 1.00384 1.39703 0.86320 0.79595 0.77467 0.83536 1.21458 1.21623 1.20435 1.21098 0.98900 0.90243 0.85572 1.21920 1.00307 0.94144 1.00105 1.21598 0.79318 1.02313 0.97713 0.88759 0.89011 0.89889 0.91126 0.89171 0.89678 0.90338 0.88802 0.77630 0.92361 0.93208 0.92745 0.92127 0.94368 0.92035 0.92782 0.93744 0.96706 0.88523 0.90348 0.90009 0.91329 0.88630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.26 9.12 36.00 0.33 -0.94 16 2 C 0.51 5.91 7.80 -10.99 -0.09 5.82 16 3 O -0.55 -8.71 16.52 5.56 0.09 -8.62 16 4 N -0.61 -6.16 2.97 -172.78 -0.51 -6.67 16 5 C 0.11 0.82 6.15 -3.71 -0.02 0.79 16 6 C -0.12 -1.24 4.65 -26.61 -0.12 -1.36 16 7 C -0.10 -1.17 2.49 -91.73 -0.23 -1.40 16 8 C 0.51 8.31 7.12 -10.99 -0.08 8.24 16 9 O -0.53 -11.29 15.64 5.56 0.09 -11.20 16 10 N -0.72 -11.09 4.97 -53.69 -0.27 -11.35 16 11 C 0.12 2.21 2.61 -67.81 -0.18 2.03 16 12 H 0.08 1.76 7.58 -51.93 -0.39 1.36 16 13 C -0.12 -1.83 5.35 -26.69 -0.14 -1.97 16 14 C -0.13 -2.13 5.37 -26.60 -0.14 -2.27 16 15 C 0.16 3.37 3.50 -67.60 -0.24 3.13 16 16 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 17 C -0.14 -2.55 7.95 37.15 0.30 -2.26 16 18 N -0.58 -14.53 2.99 -164.77 -0.49 -15.02 16 19 C -0.25 -6.91 8.60 -15.06 -0.13 -7.04 16 20 H 0.07 1.84 6.21 -52.49 -0.33 1.52 16 21 C 0.01 0.18 5.02 -17.43 -0.09 0.09 16 22 N -0.90 -26.82 11.04 55.49 0.61 -26.20 16 23 Si 0.90 22.49 29.57 -169.99 -5.03 17.46 16 24 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 26 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 27 C 0.17 4.06 4.85 -3.71 -0.02 4.04 16 28 C -0.13 -1.39 5.27 -26.61 -0.14 -1.53 16 29 C 0.11 1.12 6.44 -3.72 -0.02 1.10 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.08 0.39 6.76 -51.93 -0.35 0.04 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.09 0.52 5.83 -51.93 -0.30 0.22 16 35 H 0.08 0.90 8.07 -51.93 -0.42 0.48 16 36 H 0.08 1.05 8.13 -51.93 -0.42 0.62 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 4.65 8.00 -40.82 -0.33 4.33 16 39 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 42 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 43 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 44 H 0.06 1.24 7.67 -51.93 -0.40 0.85 16 45 H 0.05 1.03 7.40 -51.93 -0.38 0.65 16 46 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 47 H 0.01 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.10 2.76 6.04 -51.93 -0.31 2.45 16 49 H 0.08 1.10 8.14 -51.92 -0.42 0.68 16 50 H 0.08 0.79 7.53 -51.93 -0.39 0.40 16 51 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 52 H 0.10 1.11 7.00 -51.93 -0.36 0.75 16 LS Contribution 397.66 15.07 5.99 5.99 Total: -1.00 -35.51 397.66 -9.55 -45.06 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -9.02 Total: 4.09 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: -1.01 Total: 6.46 kcal Atomic # 7 Polarization: -58.59 SS G_CDS: -0.66 Total: -59.25 kcal Atomic # 8 Polarization: -19.99 SS G_CDS: 0.18 Total: -19.82 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.03 Total: 17.46 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -35.51 -9.55 -45.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072061534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.718 kcal (2) G-P(sol) polarization free energy of solvation -35.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.71 seconds