Wall clock time and date at job start Tue Mar 31 2020 21:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.21282 * 120.00105 * 2 1 4 4 N 1.34781 * 120.00204 * 179.97438 * 2 1 3 5 5 C 1.46927 * 120.62980 * 354.97627 * 4 2 1 6 6 C 1.53195 * 108.77369 * 233.63320 * 5 4 2 7 7 C 1.53035 * 109.30925 * 305.35978 * 6 5 4 8 8 C 1.50704 * 109.46007 * 181.38531 * 7 6 5 9 9 O 1.21277 * 119.99657 * 359.97438 * 8 7 6 10 10 N 1.34771 * 120.00039 * 179.97438 * 8 7 6 11 11 C 1.46500 * 119.99760 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.50096 * 34.93438 * 11 10 8 13 13 C 1.53041 * 109.49822 * 155.00213 * 11 10 8 14 14 C 1.53046 * 109.53941 * 181.31409 * 13 11 10 15 15 C 1.53198 * 109.31191 * 298.63337 * 14 13 11 16 16 H 1.09003 * 109.58444 * 294.85166 * 15 14 13 17 17 C 1.52993 * 109.58601 * 174.41949 * 15 14 13 18 18 N 1.46923 * 108.77425 * 54.62973 * 15 14 13 19 19 C 1.36940 * 120.62724 * 126.39038 * 18 15 14 20 20 H 1.08000 * 120.00278 * 330.16315 * 19 18 15 21 21 C 1.38816 * 120.00060 * 150.16507 * 19 18 15 22 22 N 1.31617 * 120.00016 * 347.55421 * 21 19 18 23 23 Si 1.86802 * 120.00216 * 167.55764 * 21 19 18 24 24 H 1.48503 * 109.47030 * 89.99840 * 23 21 19 25 25 H 1.48495 * 109.46837 * 209.99832 * 23 21 19 26 26 H 1.48503 * 109.47027 * 330.00092 * 23 21 19 27 27 C 1.46926 * 118.74646 * 306.39706 * 18 15 14 28 28 C 1.53047 * 109.52832 * 61.37543 * 7 6 5 29 29 C 1.46923 * 120.63020 * 174.99940 * 4 2 1 30 30 H 1.08997 * 109.47447 * 264.90123 * 1 2 3 31 31 H 1.09002 * 109.46915 * 24.90235 * 1 2 3 32 32 H 1.09000 * 109.47162 * 144.90055 * 1 2 3 33 33 H 1.08990 * 109.58716 * 113.84038 * 5 4 2 34 34 H 1.09003 * 109.69925 * 353.48268 * 5 4 2 35 35 H 1.09000 * 109.49377 * 185.41438 * 6 5 4 36 36 H 1.09000 * 109.52263 * 65.33029 * 6 5 4 37 37 H 1.08997 * 109.46406 * 301.36279 * 7 6 5 38 38 H 0.96998 * 120.00388 * 0.02562 * 10 8 7 39 39 H 1.09004 * 109.46204 * 61.29320 * 13 11 10 40 40 H 1.08997 * 109.46054 * 301.32903 * 13 11 10 41 41 H 1.08998 * 109.49715 * 178.68063 * 14 13 11 42 42 H 1.08996 * 109.49647 * 58.58016 * 14 13 11 43 43 H 1.09004 * 109.46857 * 60.00491 * 17 15 14 44 44 H 1.09005 * 109.46902 * 179.97438 * 17 15 14 45 45 H 1.08996 * 109.47616 * 299.99817 * 17 15 14 46 46 H 0.96993 * 120.00372 * 180.02562 * 22 21 19 47 47 H 1.09001 * 109.58230 * 293.81939 * 27 18 15 48 48 H 1.08997 * 109.59216 * 173.39489 * 27 18 15 49 49 H 1.09007 * 109.49324 * 58.57746 * 28 7 6 50 50 H 1.09000 * 109.49750 * 178.67180 * 28 7 6 51 51 H 1.09001 * 109.58119 * 246.15486 * 29 4 2 52 52 H 1.08995 * 109.58989 * 6.43820 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4646 -2.4452 0.1118 6 6 2.0608 -3.2450 1.2744 7 6 3.5707 -3.3867 1.0694 8 6 4.1558 -4.2021 2.1937 9 8 3.4362 -4.6274 3.0723 10 7 5.4785 -4.4586 2.2226 11 6 6.0471 -5.2517 3.3152 12 1 5.3339 -6.0185 3.6176 13 6 7.3424 -5.9164 2.8436 14 6 7.9200 -6.7715 3.9739 15 6 8.2454 -5.8743 5.1723 16 1 9.0412 -5.1797 4.9033 17 6 8.6921 -6.7382 6.3534 18 7 7.0387 -5.1216 5.5411 19 6 6.5635 -5.1507 6.8251 20 1 6.7212 -6.0247 7.4396 21 6 5.8791 -4.0568 7.3368 22 7 5.8956 -2.9096 6.6917 23 14 4.9348 -4.2127 8.9410 24 1 5.8284 -3.8708 10.0767 25 1 3.7763 -3.2839 8.9256 26 1 4.4491 -5.6075 9.0959 27 6 6.3513 -4.3373 4.5062 28 6 4.2175 -1.9996 1.0555 29 6 3.6459 -1.1858 -0.1097 30 1 -0.3634 -0.0913 1.0235 31 1 -0.3633 0.9321 -0.4327 32 1 -0.3633 -0.8408 -0.5909 33 1 1.5762 -3.0085 -0.8145 34 1 0.4074 -2.2586 0.3009 35 1 1.6038 -4.2340 1.3077 36 1 1.8682 -2.7234 2.2119 37 1 3.7630 -3.8865 0.1200 38 1 6.0541 -4.1181 1.5200 39 1 8.0638 -5.1485 2.5643 40 1 7.1329 -6.5486 1.9808 41 1 8.8299 -7.2630 3.6297 42 1 7.1893 -7.5239 4.2707 43 1 9.5800 -7.3051 6.0735 44 1 8.9236 -6.0980 7.2047 45 1 7.8914 -7.4267 6.6233 46 1 5.4177 -2.1451 7.0494 47 1 6.9927 -3.5174 4.1828 48 1 5.4199 -3.9387 4.9081 49 1 4.0044 -1.4895 1.9949 50 1 5.2957 -2.1022 0.9330 51 1 3.9354 -1.6465 -1.0542 52 1 4.0284 -0.1660 -0.0681 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001072061534.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:08 Heat of formation + Delta-G solvation = -87.064692 kcal Electronic energy + Delta-G solvation = -30868.635362 eV Core-core repulsion = 26866.927835 eV Total energy + Delta-G solvation = -4001.707526 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.55605 -40.68335 -39.36691 -38.01168 -35.99615 -34.70201 -34.28471 -32.40406 -32.13617 -31.70390 -30.28883 -27.91698 -27.16640 -26.20696 -24.24674 -23.97728 -22.96115 -22.03665 -21.26804 -20.80364 -19.95452 -18.48218 -18.34808 -17.74189 -17.33656 -16.85947 -16.67048 -16.49257 -16.02041 -15.78793 -15.42808 -15.13896 -14.98380 -14.97731 -14.83424 -14.49009 -14.31450 -14.08731 -13.97888 -13.57747 -13.49199 -13.11974 -13.06913 -12.96276 -12.84317 -12.76678 -12.71019 -12.54736 -12.30197 -12.25601 -12.13665 -11.98882 -11.81977 -11.69397 -11.65129 -11.39665 -11.14595 -10.88384 -10.67043 -10.55900 -10.02124 -9.69706 -8.62032 -7.86296 -5.34340 1.38218 1.41772 1.49428 1.57673 1.71111 2.05304 2.28226 2.48997 3.30167 3.53065 3.60776 3.66429 3.79887 3.87265 3.99471 4.03560 4.09903 4.20549 4.28548 4.30911 4.38015 4.39920 4.48690 4.58461 4.61772 4.67162 4.70448 4.73236 4.77046 4.81513 4.84600 4.89160 4.92591 5.00101 5.07071 5.09271 5.13655 5.18806 5.30716 5.31712 5.36183 5.52511 5.52967 5.54678 5.61184 5.68473 5.83208 6.39644 6.40244 6.68782 7.13845 7.14935 7.40714 7.89379 8.37838 9.17932 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013062 B = 0.003130 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2143.094380 B = 8943.763883 C =10203.265832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.501 3.499 3 O -0.604 6.604 4 N -0.615 5.615 5 C 0.112 3.888 6 C -0.116 4.116 7 C -0.092 4.092 8 C 0.505 3.495 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.131 3.869 12 H 0.049 0.951 13 C -0.107 4.107 14 C -0.118 4.118 15 C 0.152 3.848 16 H 0.020 0.980 17 C -0.129 4.129 18 N -0.604 5.604 19 C -0.249 4.249 20 H 0.074 0.926 21 C -0.055 4.055 22 N -0.936 5.936 23 Si 0.957 3.043 24 H -0.279 1.279 25 H -0.301 1.301 26 H -0.270 1.270 27 C 0.181 3.819 28 C -0.119 4.119 29 C 0.115 3.885 30 H 0.101 0.899 31 H 0.093 0.907 32 H 0.116 0.884 33 H 0.108 0.892 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.038 0.962 37 H 0.141 0.859 38 H 0.412 0.588 39 H 0.071 0.929 40 H 0.087 0.913 41 H 0.095 0.905 42 H 0.051 0.949 43 H 0.079 0.921 44 H 0.037 0.963 45 H 0.045 0.955 46 H 0.243 0.757 47 H -0.007 1.007 48 H 0.042 0.958 49 H 0.033 0.967 50 H 0.097 0.903 51 H 0.107 0.893 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.115 -4.024 -21.078 22.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.292 3.708 3 O -0.486 6.486 4 N -0.348 5.348 5 C -0.009 4.009 6 C -0.155 4.155 7 C -0.113 4.113 8 C 0.293 3.707 9 O -0.469 6.469 10 N -0.360 5.360 11 C 0.025 3.975 12 H 0.067 0.933 13 C -0.145 4.145 14 C -0.158 4.158 15 C 0.047 3.953 16 H 0.038 0.962 17 C -0.187 4.187 18 N -0.329 5.329 19 C -0.379 4.379 20 H 0.092 0.908 21 C -0.250 4.250 22 N -0.582 5.582 23 Si 0.786 3.214 24 H -0.205 1.205 25 H -0.228 1.228 26 H -0.194 1.194 27 C 0.054 3.946 28 C -0.158 4.158 29 C -0.007 4.007 30 H 0.119 0.881 31 H 0.112 0.888 32 H 0.135 0.865 33 H 0.126 0.874 34 H 0.131 0.869 35 H 0.107 0.893 36 H 0.057 0.943 37 H 0.159 0.841 38 H 0.249 0.751 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.056 0.944 45 H 0.064 0.936 46 H 0.052 0.948 47 H 0.011 0.989 48 H 0.061 0.939 49 H 0.052 0.948 50 H 0.115 0.885 51 H 0.125 0.875 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -5.362 -3.678 -20.392 21.403 hybrid contribution -0.203 0.776 1.500 1.701 sum -5.565 -2.901 -18.892 19.907 Atomic orbital electron populations 1.21986 0.88507 1.06471 1.05845 1.21648 0.92431 0.82531 0.74170 1.90687 1.72130 1.33065 1.52758 1.48380 1.07610 1.06944 1.71879 1.22036 0.97470 0.82521 0.98886 1.21730 0.93496 1.01650 0.98574 1.21345 0.96588 0.95333 0.98023 1.21390 0.82265 0.79799 0.87265 1.90716 1.61042 1.54079 1.41078 1.45927 1.08192 1.54665 1.27211 1.21463 0.95247 0.93375 0.87432 0.93313 1.21641 0.94709 0.99452 0.98660 1.21951 1.01272 0.97603 0.94930 1.20818 0.87586 0.92220 0.94658 0.96195 1.21733 1.00521 0.98780 0.97655 1.44332 1.26843 1.56044 1.05650 1.19485 1.30417 0.97615 0.90410 0.90795 1.25830 1.03294 0.94825 1.01010 1.70148 1.45974 1.00887 1.41226 0.85418 0.78063 0.77389 0.80564 1.20509 1.22830 1.19436 1.20771 0.95770 0.90809 0.87293 1.21852 1.01480 0.93828 0.98651 1.21605 0.79528 1.01092 0.98510 0.88104 0.88846 0.86550 0.87407 0.86875 0.89316 0.94326 0.84133 0.75100 0.90999 0.89422 0.88630 0.92985 0.90224 0.94428 0.93551 0.94842 0.98885 0.93925 0.94849 0.88469 0.87549 0.90861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.12 9.12 71.23 0.65 -1.47 16 2 C 0.50 11.24 7.80 87.66 0.68 11.93 16 3 O -0.60 -19.81 16.52 -3.03 -0.05 -19.86 16 4 N -0.62 -11.33 2.97 -818.93 -2.43 -13.77 16 5 C 0.11 1.36 6.15 86.36 0.53 1.89 16 6 C -0.12 -2.37 4.65 30.67 0.14 -2.22 16 7 C -0.09 -1.92 2.49 -11.51 -0.03 -1.95 16 8 C 0.51 16.54 7.12 87.66 0.62 17.16 16 9 O -0.59 -26.35 15.64 -3.02 -0.05 -26.40 16 10 N -0.71 -21.37 4.97 -442.16 -2.20 -23.57 16 11 C 0.13 5.00 2.61 45.07 0.12 5.12 16 12 H 0.05 2.19 7.58 -2.39 -0.02 2.17 16 13 C -0.11 -3.04 5.35 30.62 0.16 -2.88 16 14 C -0.12 -3.62 5.37 30.68 0.16 -3.45 16 15 C 0.15 6.06 3.50 44.97 0.16 6.22 16 16 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 17 C -0.13 -4.67 7.95 71.98 0.57 -4.10 16 18 N -0.60 -30.86 2.99 -675.22 -2.02 -32.88 16 19 C -0.25 -14.10 8.60 84.03 0.72 -13.37 16 20 H 0.07 4.03 6.21 -2.91 -0.02 4.01 16 21 C -0.05 -3.26 5.02 84.86 0.43 -2.83 16 22 N -0.94 -59.14 11.04 21.65 0.24 -58.90 16 23 Si 0.96 48.14 29.57 68.60 2.03 50.17 16 24 H -0.28 -13.47 7.11 99.48 0.71 -12.77 16 25 H -0.30 -15.57 7.11 99.48 0.71 -14.86 16 26 H -0.27 -12.97 7.11 99.48 0.71 -12.26 16 27 C 0.18 9.10 4.85 86.36 0.42 9.52 16 28 C -0.12 -2.59 5.27 30.67 0.16 -2.43 16 29 C 0.12 2.13 6.44 86.36 0.56 2.68 16 30 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.12 0.66 6.76 -2.39 -0.02 0.64 16 33 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.11 0.89 5.83 -2.39 -0.01 0.88 16 35 H 0.09 1.77 8.07 -2.39 -0.02 1.75 16 36 H 0.04 1.09 8.13 -2.39 -0.02 1.07 16 37 H 0.14 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.41 8.85 8.00 -92.71 -0.74 8.11 16 39 H 0.07 1.91 8.14 -2.38 -0.02 1.89 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.04 1.50 7.67 -2.38 -0.02 1.48 16 45 H 0.05 1.72 7.40 -2.39 -0.02 1.70 16 46 H 0.24 15.13 8.31 -92.71 -0.77 14.36 16 47 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 48 H 0.04 2.61 6.04 -2.39 -0.01 2.60 16 49 H 0.03 1.01 8.14 -2.38 -0.02 1.00 16 50 H 0.10 1.76 7.53 -2.39 -0.02 1.75 16 51 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 52 H 0.07 1.73 7.00 -2.39 -0.02 1.71 16 Total: -1.00 -87.68 397.66 1.75 -85.93 By element: Atomic # 1 Polarization: 19.29 SS G_CDS: 0.17 Total: 19.46 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 6.06 Total: 19.82 kcal Atomic # 7 Polarization: -122.70 SS G_CDS: -6.41 Total: -129.11 kcal Atomic # 8 Polarization: -46.17 SS G_CDS: -0.10 Total: -46.26 kcal Atomic # 14 Polarization: 48.14 SS G_CDS: 2.03 Total: 50.17 kcal Total: -87.68 1.75 -85.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001072061534.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.139 kcal (2) G-P(sol) polarization free energy of solvation -87.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds