Wall clock time and date at job start Tue Mar 31 2020 22:39:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46306 * 2 1 4 4 C 1.53032 * 109.45501 * 119.97348 * 2 1 3 5 5 C 1.53123 * 109.27520 * 179.18695 * 4 2 1 6 6 H 1.09005 * 109.57388 * 62.29334 * 5 4 2 7 7 C 1.50705 * 109.52243 * 182.44388 * 5 4 2 8 8 O 1.21280 * 119.99908 * 89.46942 * 7 5 4 9 9 N 1.34777 * 120.00025 * 269.74921 * 7 5 4 10 10 C 1.47059 * 120.11755 * 4.02610 * 9 7 5 11 11 C 1.53951 * 107.14105 * 130.18586 * 10 9 7 12 12 O 1.42654 * 108.30006 * 55.82268 * 11 10 9 13 13 C 1.42768 * 115.68825 * 295.42172 * 12 11 10 14 14 H 1.09007 * 112.74184 * 290.33388 * 13 12 11 15 15 C 1.55401 * 107.08891 * 166.05285 * 13 12 11 16 16 N 1.47485 * 104.78462 * 281.68481 * 15 13 12 17 17 C 1.36931 * 125.68685 * 155.63145 * 16 15 13 18 18 H 1.08000 * 120.00454 * 335.06984 * 17 16 15 19 19 C 1.38819 * 120.00012 * 155.07195 * 17 16 15 20 20 N 1.31615 * 120.00211 * 157.85305 * 19 17 16 21 21 Si 1.86804 * 119.99636 * 337.85288 * 19 17 16 22 22 H 1.48500 * 109.47315 * 84.81512 * 21 19 17 23 23 H 1.48498 * 109.47143 * 204.81731 * 21 19 17 24 24 H 1.48505 * 109.46914 * 324.81940 * 21 19 17 25 25 C 1.47216 * 108.62102 * 335.60423 * 16 15 13 26 26 C 1.45662 * 120.12026 * 184.30060 * 9 7 5 27 27 H 1.09005 * 109.95402 * 345.46087 * 26 9 7 28 28 C 1.53115 * 109.16543 * 302.34615 * 5 4 2 29 29 C 1.53045 * 109.27365 * 57.65772 * 28 5 4 30 30 N 1.46845 * 109.52169 * 300.81746 * 29 28 5 31 31 C 1.46901 * 110.99815 * 185.83845 * 30 29 28 32 32 H 1.08996 * 109.47445 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47256 * 299.97611 * 1 2 3 34 34 H 1.09004 * 109.47612 * 59.97532 * 1 2 3 35 35 H 1.09000 * 109.50230 * 59.25512 * 4 2 1 36 36 H 1.08998 * 109.50647 * 299.13289 * 4 2 1 37 37 H 1.08999 * 109.87428 * 249.70292 * 10 9 7 38 38 H 1.08994 * 109.87972 * 10.78002 * 10 9 7 39 39 H 1.09003 * 109.82590 * 296.06759 * 11 10 9 40 40 H 1.09001 * 109.65438 * 175.48195 * 11 10 9 41 41 H 1.08991 * 110.37969 * 40.51483 * 15 13 12 42 42 H 1.09007 * 110.37668 * 162.75580 * 15 13 12 43 43 H 0.97000 * 119.99886 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.95612 * 241.88637 * 25 16 15 45 45 H 1.08993 * 109.96089 * 120.65100 * 25 16 15 46 46 H 1.08995 * 109.50493 * 177.59156 * 28 5 4 47 47 H 1.08992 * 109.50633 * 297.71731 * 28 5 4 48 48 H 1.08999 * 109.46159 * 60.83360 * 29 28 5 49 49 H 1.08999 * 109.45756 * 180.80495 * 29 28 5 50 50 H 1.09005 * 109.46960 * 56.05102 * 31 30 29 51 51 H 1.08998 * 109.46930 * 176.04502 * 31 30 29 52 52 H 1.08996 * 109.47262 * 296.04472 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7363 1.2356 6 1 3.9466 0.2864 1.2679 7 6 4.0780 -1.4972 2.4335 8 8 4.2588 -2.6941 2.3595 9 7 4.3254 -0.8484 3.5886 10 6 4.0181 0.5845 3.7106 11 6 3.2066 0.7658 5.0063 12 8 3.9633 0.2254 6.0881 13 6 4.1955 -1.1824 6.0384 14 1 3.2898 -1.7651 6.2066 15 6 5.3079 -1.4986 7.0764 16 7 6.5644 -1.1002 6.4148 17 6 7.7248 -0.7474 7.0504 18 1 7.6921 -0.3569 8.0568 19 6 8.9433 -0.8915 6.4011 20 7 9.9831 -0.1836 6.7883 21 14 9.1070 -2.0902 4.9778 22 1 8.6728 -1.4288 3.7211 23 1 10.5240 -2.5154 4.8493 24 1 8.2544 -3.2793 5.2315 25 6 6.3630 -1.1457 4.9572 26 6 4.9037 -1.5626 4.7188 27 1 4.8333 -2.6379 4.5546 28 6 4.0546 -1.4191 -0.0466 29 6 3.4864 -0.6778 -1.2590 30 7 2.0192 -0.6917 -1.1994 31 6 1.4374 -0.1104 -2.4166 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5135 0.8902 34 1 -0.3634 0.5142 -0.8898 35 1 1.6656 -1.7447 1.2576 36 1 1.6893 -0.1982 2.1399 37 1 4.9430 1.1585 3.7660 38 1 3.4286 0.9114 2.8541 39 1 2.2559 0.2389 4.9239 40 1 3.0244 1.8265 5.1794 41 1 5.1560 -0.9159 7.9849 42 1 5.3199 -2.5639 7.3072 43 1 10.8344 -0.2841 6.3344 44 1 7.0368 -1.8774 4.5113 45 1 6.5441 -0.1613 4.5257 46 1 5.1436 -1.3951 -0.0830 47 1 3.7121 -2.4538 -0.0594 48 1 3.8404 0.3531 -1.2530 49 1 3.8174 -1.1701 -2.1735 50 1 1.8130 -0.6442 -3.2896 51 1 0.3516 -0.1968 -2.3773 52 1 1.7159 0.9411 -2.4860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083176460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:41 Heat of formation + Delta-G solvation = -26.713914 kcal Electronic energy + Delta-G solvation = -31854.511199 eV Core-core repulsion = 27855.420679 eV Total energy + Delta-G solvation = -3999.090520 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.94555 -39.59197 -38.23303 -36.03606 -34.83170 -33.91154 -32.76587 -32.30613 -30.21827 -28.65500 -27.96674 -27.51118 -26.73471 -24.41708 -23.52264 -23.47582 -22.48615 -20.80262 -20.38234 -19.95589 -18.59785 -17.43823 -17.20504 -16.57190 -16.22322 -15.93936 -15.71025 -15.53664 -15.15939 -14.82285 -14.72189 -14.47287 -14.21819 -13.84637 -13.60476 -13.43188 -12.98185 -12.93436 -12.72224 -12.58066 -12.45841 -12.29991 -12.18565 -12.01813 -11.96458 -11.74663 -11.58206 -11.32523 -11.27151 -11.17227 -11.03190 -10.83397 -10.72860 -10.63763 -10.24732 -10.08735 -9.84996 -9.53932 -9.45546 -8.65697 -8.57754 -8.34981 -7.00005 -5.95706 -3.28544 2.59568 2.87647 3.37218 3.50308 3.52537 3.55032 3.87729 4.20205 4.42808 4.47270 4.56123 4.62831 4.69394 4.78568 4.85292 4.94357 4.96318 5.04339 5.05550 5.06477 5.11450 5.16394 5.19521 5.24104 5.26879 5.36383 5.39291 5.44349 5.46730 5.47732 5.58066 5.61094 5.64352 5.70359 5.71880 5.78401 5.82813 5.93652 5.99396 6.14381 6.29109 6.39402 6.50038 6.55580 6.73220 6.76186 6.77495 7.39228 7.46928 7.74859 8.18346 8.32144 8.83190 9.68494 10.17752 11.20626 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.003488 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.434615 B = 8026.626493 C = 8990.073208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.084 3.916 3 H 0.042 0.958 4 C -0.099 4.099 5 C -0.108 4.108 6 H 0.089 0.911 7 C 0.520 3.480 8 O -0.536 6.536 9 N -0.600 5.600 10 C 0.067 3.933 11 C 0.051 3.949 12 O -0.357 6.357 13 C 0.069 3.931 14 H 0.080 0.920 15 C 0.139 3.861 16 N -0.600 5.600 17 C -0.239 4.239 18 H 0.092 0.908 19 C 0.027 3.973 20 N -0.905 5.905 21 Si 0.884 3.116 22 H -0.288 1.288 23 H -0.302 1.302 24 H -0.277 1.277 25 C 0.123 3.877 26 C 0.099 3.901 27 H 0.109 0.891 28 C -0.101 4.101 29 C 0.058 3.942 30 N -0.539 5.539 31 C 0.022 3.978 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.043 0.957 43 H 0.263 0.737 44 H 0.030 0.970 45 H 0.043 0.957 46 H 0.071 0.929 47 H 0.086 0.914 48 H 0.034 0.966 49 H 0.079 0.921 50 H 0.067 0.933 51 H 0.073 0.927 52 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.157 3.219 -15.505 26.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.025 4.025 3 H 0.060 0.940 4 C -0.137 4.137 5 C -0.129 4.129 6 H 0.107 0.893 7 C 0.308 3.692 8 O -0.412 6.412 9 N -0.333 5.333 10 C -0.055 4.055 11 C -0.027 4.027 12 O -0.275 6.275 13 C 0.009 3.991 14 H 0.097 0.903 15 C 0.013 3.987 16 N -0.328 5.328 17 C -0.366 4.366 18 H 0.110 0.890 19 C -0.172 4.172 20 N -0.548 5.548 21 Si 0.716 3.284 22 H -0.216 1.216 23 H -0.230 1.230 24 H -0.203 1.203 25 C -0.003 4.003 26 C -0.005 4.005 27 H 0.127 0.873 28 C -0.139 4.139 29 C -0.070 4.070 30 N -0.264 5.264 31 C -0.126 4.126 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.110 0.890 39 H 0.069 0.931 40 H 0.121 0.879 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.073 0.927 44 H 0.047 0.953 45 H 0.061 0.939 46 H 0.090 0.910 47 H 0.105 0.895 48 H 0.052 0.948 49 H 0.098 0.902 50 H 0.086 0.914 51 H 0.091 0.909 52 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -20.866 2.270 -15.314 25.982 hybrid contribution 0.559 0.161 -1.221 1.353 sum -20.307 2.431 -16.535 26.299 Atomic orbital electron populations 1.21921 0.93964 1.02853 1.01869 1.21600 0.95582 0.95230 0.90046 0.93963 1.21595 0.92373 1.02679 0.97063 1.21416 0.97420 1.00324 0.93785 0.89278 1.20624 0.77175 0.87815 0.83596 1.90686 1.52373 1.14793 1.83360 1.47713 1.62502 1.10175 1.12923 1.22701 1.01471 0.81720 0.99652 1.22933 0.93250 0.99866 0.86613 1.87939 1.73539 1.21717 1.44309 1.23779 0.97403 0.82253 0.95636 0.90283 1.21806 0.84553 0.97647 0.94682 1.44575 1.09454 1.79402 0.99335 1.18601 0.81104 1.35994 1.00927 0.89043 1.25091 0.95214 0.98685 0.98208 1.69836 1.02043 1.39555 1.43387 0.86932 0.75300 0.83537 0.82674 1.21582 1.22998 1.20296 1.21718 0.91941 0.99097 0.87563 1.22278 0.94584 0.98212 0.85459 0.87316 1.21470 1.00316 1.00993 0.91129 1.22103 0.86925 0.98913 0.99033 1.61942 1.07335 1.55054 1.02098 1.22423 1.00730 0.97151 0.92334 0.91559 0.91974 0.92293 0.90041 0.90998 0.89823 0.88952 0.93121 0.87875 0.91642 0.93956 0.92671 0.95266 0.93888 0.91000 0.89530 0.94794 0.90223 0.91416 0.90877 0.95765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 8.76 37.16 0.33 -0.64 16 2 C 0.08 0.67 2.44 -67.73 -0.17 0.50 16 3 H 0.04 0.33 8.14 -51.93 -0.42 -0.09 16 4 C -0.10 -0.92 4.48 -26.65 -0.12 -1.04 16 5 C -0.11 -1.21 1.73 -91.65 -0.16 -1.36 16 6 H 0.09 0.88 6.45 -51.93 -0.33 0.54 16 7 C 0.52 7.98 6.73 -10.98 -0.07 7.91 16 8 O -0.54 -10.21 15.53 5.56 0.09 -10.12 16 9 N -0.60 -9.32 2.72 -164.41 -0.45 -9.77 16 10 C 0.07 0.82 6.07 -3.24 -0.02 0.81 16 11 C 0.05 0.61 7.04 37.65 0.26 0.88 16 12 O -0.36 -5.98 10.09 -35.23 -0.36 -6.33 16 13 C 0.07 1.16 4.12 -24.66 -0.10 1.06 16 14 H 0.08 1.14 8.14 -51.92 -0.42 0.71 16 15 C 0.14 2.78 6.81 -2.23 -0.02 2.77 16 16 N -0.60 -14.91 3.12 -169.99 -0.53 -15.44 16 17 C -0.24 -6.90 10.54 -15.06 -0.16 -7.06 16 18 H 0.09 2.78 8.06 -52.49 -0.42 2.35 16 19 C 0.03 0.81 5.43 -17.43 -0.09 0.72 16 20 N -0.91 -28.29 13.97 55.49 0.78 -27.51 16 21 Si 0.88 23.75 24.53 -169.99 -4.17 19.58 16 22 H -0.29 -7.64 6.79 56.52 0.38 -7.25 16 23 H -0.30 -8.11 7.11 56.52 0.40 -7.70 16 24 H -0.28 -7.42 7.05 56.52 0.40 -7.02 16 25 C 0.12 2.83 5.20 -3.32 -0.02 2.81 16 26 C 0.10 1.84 3.11 -67.26 -0.21 1.64 16 27 H 0.11 2.13 7.03 -51.93 -0.37 1.76 16 28 C -0.10 -1.13 5.02 -26.65 -0.13 -1.26 16 29 C 0.06 0.52 5.46 -3.83 -0.02 0.50 16 30 N -0.54 -4.70 4.75 -234.93 -1.12 -5.82 16 31 C 0.02 0.15 9.06 60.07 0.54 0.69 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.34 6.32 -51.93 -0.33 0.01 16 35 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 36 H 0.07 0.58 7.55 -51.93 -0.39 0.19 16 37 H 0.08 1.15 7.55 -51.93 -0.39 0.76 16 38 H 0.09 0.81 5.08 -51.93 -0.26 0.54 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.10 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 42 H 0.04 0.81 8.14 -51.92 -0.42 0.38 16 43 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 44 H 0.03 0.76 3.50 -51.93 -0.18 0.57 16 45 H 0.04 1.04 7.23 -51.93 -0.38 0.66 16 46 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.09 1.12 7.78 -51.93 -0.40 0.72 16 48 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.08 0.65 8.09 -51.93 -0.42 0.23 16 50 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 51 H 0.07 0.44 6.20 -51.93 -0.32 0.12 16 52 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 382.60 15.07 5.77 5.77 Total: -1.00 -34.75 382.60 -9.00 -43.75 By element: Atomic # 1 Polarization: 5.84 SS G_CDS: -8.85 Total: -3.01 kcal Atomic # 6 Polarization: 9.06 SS G_CDS: -0.15 Total: 8.91 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -1.32 Total: -58.53 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.27 Total: -16.45 kcal Atomic # 14 Polarization: 23.75 SS G_CDS: -4.17 Total: 19.58 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.75 -9.00 -43.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083176460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.036 kcal (2) G-P(sol) polarization free energy of solvation -34.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds