Wall clock time and date at job start Tue Mar 31 2020 22:39:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.46306 * 2 1 4 4 C 1.53032 * 109.45501 * 119.97348 * 2 1 3 5 5 C 1.53123 * 109.27520 * 179.18695 * 4 2 1 6 6 H 1.09005 * 109.57388 * 62.29334 * 5 4 2 7 7 C 1.50705 * 109.52243 * 182.44388 * 5 4 2 8 8 O 1.21280 * 119.99908 * 89.46942 * 7 5 4 9 9 N 1.34777 * 120.00025 * 269.74921 * 7 5 4 10 10 C 1.47059 * 120.11755 * 4.02610 * 9 7 5 11 11 C 1.53951 * 107.14105 * 130.18586 * 10 9 7 12 12 O 1.42654 * 108.30006 * 55.82268 * 11 10 9 13 13 C 1.42768 * 115.68825 * 295.42172 * 12 11 10 14 14 H 1.09007 * 112.74184 * 290.33388 * 13 12 11 15 15 C 1.55401 * 107.08891 * 166.05285 * 13 12 11 16 16 N 1.47485 * 104.78462 * 281.68481 * 15 13 12 17 17 C 1.36931 * 125.68685 * 155.63145 * 16 15 13 18 18 H 1.08000 * 120.00454 * 335.06984 * 17 16 15 19 19 C 1.38819 * 120.00012 * 155.07195 * 17 16 15 20 20 N 1.31615 * 120.00211 * 157.85305 * 19 17 16 21 21 Si 1.86804 * 119.99636 * 337.85288 * 19 17 16 22 22 H 1.48500 * 109.47315 * 84.81512 * 21 19 17 23 23 H 1.48498 * 109.47143 * 204.81731 * 21 19 17 24 24 H 1.48505 * 109.46914 * 324.81940 * 21 19 17 25 25 C 1.47216 * 108.62102 * 335.60423 * 16 15 13 26 26 C 1.45662 * 120.12026 * 184.30060 * 9 7 5 27 27 H 1.09005 * 109.95402 * 345.46087 * 26 9 7 28 28 C 1.53115 * 109.16543 * 302.34615 * 5 4 2 29 29 C 1.53045 * 109.27365 * 57.65772 * 28 5 4 30 30 N 1.46845 * 109.52169 * 300.81746 * 29 28 5 31 31 C 1.46901 * 110.99815 * 185.83845 * 30 29 28 32 32 H 1.08996 * 109.47445 * 179.97438 * 1 2 3 33 33 H 1.09001 * 109.47256 * 299.97611 * 1 2 3 34 34 H 1.09004 * 109.47612 * 59.97532 * 1 2 3 35 35 H 1.09000 * 109.50230 * 59.25512 * 4 2 1 36 36 H 1.08998 * 109.50647 * 299.13289 * 4 2 1 37 37 H 1.08999 * 109.87428 * 249.70292 * 10 9 7 38 38 H 1.08994 * 109.87972 * 10.78002 * 10 9 7 39 39 H 1.09003 * 109.82590 * 296.06759 * 11 10 9 40 40 H 1.09001 * 109.65438 * 175.48195 * 11 10 9 41 41 H 1.08991 * 110.37969 * 40.51483 * 15 13 12 42 42 H 1.09007 * 110.37668 * 162.75580 * 15 13 12 43 43 H 0.97000 * 119.99886 * 180.02562 * 20 19 17 44 44 H 1.09000 * 109.95612 * 241.88637 * 25 16 15 45 45 H 1.08993 * 109.96089 * 120.65100 * 25 16 15 46 46 H 1.08995 * 109.50493 * 177.59156 * 28 5 4 47 47 H 1.08992 * 109.50633 * 297.71731 * 28 5 4 48 48 H 1.08999 * 109.46159 * 60.83360 * 29 28 5 49 49 H 1.08999 * 109.45756 * 180.80495 * 29 28 5 50 50 H 1.09005 * 109.46960 * 56.05102 * 31 30 29 51 51 H 1.08998 * 109.46930 * 176.04502 * 31 30 29 52 52 H 1.08996 * 109.47262 * 296.04472 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0397 -0.7209 1.2500 5 6 3.5707 -0.7363 1.2356 6 1 3.9466 0.2864 1.2679 7 6 4.0780 -1.4972 2.4335 8 8 4.2588 -2.6941 2.3595 9 7 4.3254 -0.8484 3.5886 10 6 4.0181 0.5845 3.7106 11 6 3.2066 0.7658 5.0063 12 8 3.9633 0.2254 6.0881 13 6 4.1955 -1.1824 6.0384 14 1 3.2898 -1.7651 6.2066 15 6 5.3079 -1.4986 7.0764 16 7 6.5644 -1.1002 6.4148 17 6 7.7248 -0.7474 7.0504 18 1 7.6921 -0.3569 8.0568 19 6 8.9433 -0.8915 6.4011 20 7 9.9831 -0.1836 6.7883 21 14 9.1070 -2.0902 4.9778 22 1 8.6728 -1.4288 3.7211 23 1 10.5240 -2.5154 4.8493 24 1 8.2544 -3.2793 5.2315 25 6 6.3630 -1.1457 4.9572 26 6 4.9037 -1.5626 4.7188 27 1 4.8333 -2.6379 4.5546 28 6 4.0546 -1.4191 -0.0466 29 6 3.4864 -0.6778 -1.2590 30 7 2.0192 -0.6917 -1.1994 31 6 1.4374 -0.1104 -2.4166 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5135 0.8902 34 1 -0.3634 0.5142 -0.8898 35 1 1.6656 -1.7447 1.2576 36 1 1.6893 -0.1982 2.1399 37 1 4.9430 1.1585 3.7660 38 1 3.4286 0.9114 2.8541 39 1 2.2559 0.2389 4.9239 40 1 3.0244 1.8265 5.1794 41 1 5.1560 -0.9159 7.9849 42 1 5.3199 -2.5639 7.3072 43 1 10.8344 -0.2841 6.3344 44 1 7.0368 -1.8774 4.5113 45 1 6.5441 -0.1613 4.5257 46 1 5.1436 -1.3951 -0.0830 47 1 3.7121 -2.4538 -0.0594 48 1 3.8404 0.3531 -1.2530 49 1 3.8174 -1.1701 -2.1735 50 1 1.8130 -0.6442 -3.2896 51 1 0.3516 -0.1968 -2.3773 52 1 1.7159 0.9411 -2.4860 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083176460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:39:36 Heat of formation + Delta-G solvation = -52.620683 kcal Electronic energy + Delta-G solvation = -31855.634601 eV Core-core repulsion = 27855.420679 eV Total energy + Delta-G solvation = -4000.213922 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 6.07 seconds Orbital eigenvalues (eV) -42.12863 -40.60308 -39.32281 -37.62898 -36.08661 -34.85255 -34.30063 -33.39390 -31.85505 -29.90229 -29.41381 -28.47057 -27.42366 -26.17175 -24.64379 -24.37696 -23.43740 -22.39499 -21.61527 -20.77129 -19.77461 -19.17425 -18.62405 -17.90989 -17.66830 -16.98804 -16.82202 -16.38668 -16.19117 -16.04920 -15.94340 -15.46352 -15.44322 -15.09865 -14.96985 -14.85126 -14.38583 -14.19321 -13.96492 -13.63693 -13.58654 -13.30063 -13.24517 -13.15331 -12.97222 -12.88565 -12.76765 -12.66806 -12.56685 -12.41280 -12.15242 -12.06961 -11.92382 -11.75000 -11.61192 -11.50686 -11.44032 -11.06625 -10.81621 -10.70945 -9.65441 -9.24216 -9.08432 -8.27655 -5.55543 1.18914 1.27575 1.36781 1.41063 1.68200 2.31307 2.70295 2.93300 2.95095 3.22235 3.28503 3.40461 3.63434 3.66361 3.72029 3.89413 3.93100 4.02150 4.03917 4.10838 4.17122 4.25908 4.30345 4.37297 4.45672 4.47553 4.48942 4.53497 4.58349 4.68010 4.68745 4.75420 4.79408 4.83808 4.85019 4.89726 4.92547 4.96021 4.96427 5.03443 5.08081 5.16577 5.24664 5.33477 5.42424 5.64290 6.04189 6.13656 6.18718 6.21509 6.30967 6.66630 6.98154 7.44202 8.02579 8.92843 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016951 B = 0.003488 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.434615 B = 8026.626493 C = 8990.073208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.084 3.916 3 H 0.054 0.946 4 C -0.093 4.093 5 C -0.100 4.100 6 H 0.110 0.890 7 C 0.516 3.484 8 O -0.579 6.579 9 N -0.601 5.601 10 C 0.065 3.935 11 C 0.047 3.953 12 O -0.384 6.384 13 C 0.089 3.911 14 H 0.117 0.883 15 C 0.129 3.871 16 N -0.617 5.617 17 C -0.228 4.228 18 H 0.067 0.933 19 C -0.023 4.023 20 N -0.946 5.946 21 Si 0.941 3.059 22 H -0.288 1.288 23 H -0.301 1.301 24 H -0.279 1.279 25 C 0.124 3.876 26 C 0.107 3.893 27 H 0.097 0.903 28 C -0.100 4.100 29 C 0.065 3.935 30 N -0.556 5.556 31 C 0.022 3.978 32 H 0.055 0.945 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.061 0.939 36 H 0.092 0.908 37 H 0.065 0.935 38 H 0.134 0.866 39 H 0.077 0.923 40 H 0.132 0.868 41 H 0.065 0.935 42 H 0.056 0.944 43 H 0.264 0.736 44 H 0.004 0.996 45 H 0.027 0.973 46 H 0.059 0.941 47 H 0.062 0.938 48 H 0.044 0.956 49 H 0.084 0.916 50 H 0.069 0.931 51 H 0.081 0.919 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.516 4.409 -17.120 30.225 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 H 0.072 0.928 4 C -0.131 4.131 5 C -0.121 4.121 6 H 0.128 0.872 7 C 0.306 3.694 8 O -0.458 6.458 9 N -0.333 5.333 10 C -0.057 4.057 11 C -0.029 4.029 12 O -0.303 6.303 13 C 0.030 3.970 14 H 0.135 0.865 15 C 0.005 3.995 16 N -0.344 5.344 17 C -0.357 4.357 18 H 0.084 0.916 19 C -0.218 4.218 20 N -0.593 5.593 21 Si 0.773 3.227 22 H -0.216 1.216 23 H -0.229 1.229 24 H -0.205 1.205 25 C -0.002 4.002 26 C 0.001 3.999 27 H 0.115 0.885 28 C -0.139 4.139 29 C -0.063 4.063 30 N -0.282 5.282 31 C -0.125 4.125 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.111 0.889 37 H 0.083 0.917 38 H 0.152 0.848 39 H 0.095 0.905 40 H 0.149 0.851 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.073 0.927 44 H 0.022 0.978 45 H 0.045 0.955 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.062 0.938 49 H 0.102 0.898 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -24.280 3.477 -16.943 29.810 hybrid contribution 1.542 -0.169 -0.688 1.697 sum -22.738 3.307 -17.631 28.962 Atomic orbital electron populations 1.21898 0.92745 1.02533 1.03052 1.21640 0.96496 0.95309 0.88920 0.92789 1.21595 0.90435 1.02138 0.98921 1.21467 0.98900 1.00390 0.91319 0.87192 1.21433 0.76152 0.87556 0.84245 1.90665 1.54199 1.16971 1.84002 1.47833 1.61882 1.11472 1.12130 1.22963 1.01474 0.79335 1.01917 1.23287 0.93368 1.01619 0.84669 1.87892 1.74699 1.21247 1.46435 1.23626 0.97325 0.83338 0.92685 0.86538 1.22045 0.83606 0.98323 0.95526 1.44676 1.09752 1.79411 1.00565 1.18576 0.82748 1.34361 0.99999 0.91556 1.25578 0.95255 1.00212 1.00789 1.69926 1.02630 1.41327 1.45369 0.86002 0.74885 0.81543 0.80311 1.21560 1.22913 1.20530 1.21659 0.94870 0.97464 0.86210 1.21950 0.92109 0.97963 0.87865 0.88470 1.21425 0.99703 1.00139 0.92588 1.22007 0.87403 0.99037 0.97846 1.61930 1.06981 1.56043 1.03211 1.22453 1.01129 0.97424 0.91506 0.92622 0.90644 0.91314 0.92044 0.88929 0.91676 0.84790 0.90519 0.85066 0.91718 0.92636 0.92659 0.97831 0.95470 0.92202 0.91953 0.93753 0.89784 0.91232 0.90042 0.95065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 8.76 71.98 0.63 -0.74 16 2 C 0.08 1.05 2.44 44.93 0.11 1.16 16 3 H 0.05 0.58 8.14 -2.38 -0.02 0.56 16 4 C -0.09 -1.43 4.48 30.65 0.14 -1.29 16 5 C -0.10 -2.00 1.73 -11.46 -0.02 -2.02 16 6 H 0.11 1.76 6.45 -2.38 -0.02 1.74 16 7 C 0.52 15.19 6.73 87.66 0.59 15.78 16 8 O -0.58 -22.14 15.53 -3.03 -0.05 -22.18 16 9 N -0.60 -17.53 2.72 -792.47 -2.16 -19.68 16 10 C 0.06 1.37 6.07 86.59 0.53 1.89 16 11 C 0.05 0.93 7.04 72.30 0.51 1.44 16 12 O -0.38 -11.81 10.09 -148.98 -1.50 -13.31 16 13 C 0.09 2.82 4.12 31.93 0.13 2.95 16 14 H 0.12 2.88 8.14 -2.38 -0.02 2.87 16 15 C 0.13 5.08 6.81 87.02 0.59 5.67 16 16 N -0.62 -30.91 3.12 -691.71 -2.16 -33.07 16 17 C -0.23 -13.51 10.54 84.04 0.89 -12.62 16 18 H 0.07 4.19 8.06 -2.91 -0.02 4.16 16 19 C -0.02 -1.38 5.43 84.86 0.46 -0.92 16 20 N -0.95 -60.86 13.97 21.65 0.30 -60.56 16 21 Si 0.94 50.77 24.53 68.60 1.68 52.45 16 22 H -0.29 -15.29 6.79 99.48 0.68 -14.62 16 23 H -0.30 -16.00 7.11 99.48 0.71 -15.29 16 24 H -0.28 -14.94 7.05 99.48 0.70 -14.24 16 25 C 0.12 5.76 5.20 86.46 0.45 6.21 16 26 C 0.11 3.87 3.11 45.88 0.14 4.01 16 27 H 0.10 3.76 7.03 -2.38 -0.02 3.75 16 28 C -0.10 -2.16 5.02 30.65 0.15 -2.01 16 29 C 0.06 1.03 5.46 86.33 0.47 1.50 16 30 N -0.56 -8.27 4.75 -897.17 -4.26 -12.53 16 31 C 0.02 0.24 9.06 127.69 1.16 1.39 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.53 6.32 -2.38 -0.02 0.51 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.09 1.05 7.55 -2.39 -0.02 1.03 16 37 H 0.06 1.66 7.55 -2.39 -0.02 1.64 16 38 H 0.13 1.68 5.08 -2.39 -0.01 1.67 16 39 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 40 H 0.13 1.87 8.14 -2.39 -0.02 1.85 16 41 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 42 H 0.06 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.26 16.13 8.31 -92.71 -0.77 15.36 16 44 H 0.00 0.22 3.50 -2.39 -0.01 0.21 16 45 H 0.03 1.33 7.23 -2.39 -0.02 1.32 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.06 1.64 7.78 -2.39 -0.02 1.62 16 48 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 49 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 50 H 0.07 0.71 8.10 -2.38 -0.02 0.69 16 51 H 0.08 0.73 6.20 -2.39 -0.01 0.71 16 52 H 0.03 0.29 8.14 -2.39 -0.02 0.27 16 Total: -1.00 -79.06 382.60 -0.35 -79.40 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: 0.86 Total: 7.08 kcal Atomic # 6 Polarization: 15.48 SS G_CDS: 6.93 Total: 22.41 kcal Atomic # 7 Polarization: -117.57 SS G_CDS: -8.27 Total: -125.84 kcal Atomic # 8 Polarization: -33.95 SS G_CDS: -1.55 Total: -35.50 kcal Atomic # 14 Polarization: 50.77 SS G_CDS: 1.68 Total: 52.45 kcal Total: -79.06 -0.35 -79.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083176460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.783 kcal (2) G-P(sol) polarization free energy of solvation -79.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.274 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.621 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.07 seconds