Wall clock time and date at job start Tue Mar 31 2020 21:59:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08991 * 109.49939 * 2 1 4 4 C 1.53047 * 109.49659 * 239.93587 * 2 1 3 5 5 C 1.53039 * 109.53652 * 178.68601 * 4 2 1 6 6 C 1.53194 * 109.31392 * 61.36379 * 5 4 2 7 7 N 1.46926 * 108.77473 * 305.36583 * 6 5 4 8 8 C 1.34778 * 120.62820 * 233.58757 * 7 6 5 9 9 O 1.21349 * 119.99885 * 187.09074 * 8 7 6 10 10 C 1.49446 * 120.00134 * 7.08156 * 8 7 6 11 11 O 1.21353 * 120.00153 * 6.40525 * 10 8 7 12 12 N 1.34775 * 120.00167 * 186.39979 * 10 8 7 13 13 C 1.46510 * 120.00205 * 180.02562 * 12 10 8 14 14 H 1.09002 * 109.47023 * 35.00161 * 13 12 10 15 15 C 1.52995 * 109.47081 * 275.00408 * 13 12 10 16 16 C 1.53005 * 109.47144 * 180.02562 * 15 13 12 17 17 C 1.53002 * 109.46928 * 59.99740 * 16 15 13 18 18 C 1.52994 * 109.47113 * 300.00317 * 17 16 15 19 19 C 1.52997 * 109.47616 * 60.00192 * 18 17 16 20 20 H 1.09002 * 109.47057 * 59.99936 * 19 18 17 21 21 N 1.46494 * 109.47675 * 180.02562 * 19 18 17 22 22 C 1.36941 * 120.00038 * 275.00268 * 21 19 18 23 23 H 1.07997 * 119.99755 * 359.97438 * 22 21 19 24 24 C 1.38808 * 120.00075 * 179.97438 * 22 21 19 25 25 N 1.31623 * 120.00367 * 0.02562 * 24 22 21 26 26 Si 1.86808 * 120.00023 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46875 * 60.00016 * 26 24 22 28 28 H 1.48500 * 109.47238 * 180.02562 * 26 24 22 29 29 H 1.48506 * 109.46911 * 300.00072 * 26 24 22 30 30 C 1.46919 * 118.73935 * 53.86150 * 7 6 5 31 31 H 1.08997 * 109.47251 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47172 * 300.06439 * 1 2 3 33 33 H 1.08999 * 109.47089 * 60.06644 * 1 2 3 34 34 H 1.08999 * 109.45879 * 58.66139 * 4 2 1 35 35 H 1.08998 * 109.44889 * 298.69893 * 4 2 1 36 36 H 1.09001 * 109.49588 * 301.41139 * 5 4 2 37 37 H 1.09001 * 109.49848 * 181.31978 * 5 4 2 38 38 H 1.08999 * 109.58666 * 185.57513 * 6 5 4 39 39 H 1.08996 * 109.58650 * 65.15621 * 6 5 4 40 40 H 0.96999 * 119.99956 * 0.02562 * 12 10 8 41 41 H 1.09003 * 109.47598 * 59.99897 * 15 13 12 42 42 H 1.09002 * 109.46990 * 299.99773 * 15 13 12 43 43 H 1.09004 * 109.46707 * 300.00231 * 16 15 13 44 44 H 1.09002 * 109.46982 * 179.97438 * 16 15 13 45 45 H 1.09002 * 109.47263 * 60.00199 * 17 16 15 46 46 H 1.08999 * 109.46706 * 179.97438 * 17 16 15 47 47 H 1.09003 * 109.47290 * 180.02562 * 18 17 16 48 48 H 1.09004 * 109.47476 * 300.00094 * 18 17 16 49 49 H 0.97007 * 120.00356 * 94.99611 * 21 19 18 50 50 H 0.96994 * 120.00239 * 179.97438 * 25 24 22 51 51 H 1.08994 * 109.59014 * 65.92879 * 30 7 6 52 52 H 1.09009 * 109.58484 * 186.35282 * 30 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 6 2.0408 -0.7228 -1.2486 5 6 3.5708 -0.6947 -1.2662 6 6 4.1052 -1.4268 -0.0312 7 7 3.5045 -0.8295 1.1693 8 6 4.2811 -0.3871 2.1781 9 8 3.7739 -0.0151 3.2159 10 6 5.7667 -0.3549 2.0188 11 8 6.2675 -0.6156 0.9446 12 7 6.5502 -0.0361 3.0680 13 6 8.0066 -0.0039 2.9117 14 1 8.2570 0.3538 1.9129 15 6 8.5715 -1.4125 3.1053 16 6 10.0925 -1.3788 2.9427 17 6 10.6965 -0.4389 3.9880 18 6 10.1315 0.9697 3.7943 19 6 8.6105 0.9360 3.9570 20 1 8.3598 0.5781 4.9556 21 7 8.0695 2.2846 3.7710 22 6 8.0312 3.1584 4.8246 23 1 8.3996 2.8532 5.7929 24 6 7.5190 4.4364 4.6482 25 7 7.0696 4.8083 3.4683 26 14 7.4663 5.6282 6.0858 27 1 8.8446 5.8601 6.5873 28 1 6.8780 6.9166 5.6394 29 1 6.6336 5.0549 7.1737 30 6 2.0411 -0.7294 1.2518 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5148 0.8894 33 1 -0.3633 0.5128 -0.8906 34 1 1.6581 -0.2239 -2.1390 35 1 1.6967 -1.7569 -1.2356 36 1 3.9159 0.3391 -1.2540 37 1 3.9334 -1.1891 -2.1675 38 1 5.1895 -1.3248 0.0134 39 1 3.8375 -2.4819 -0.0875 40 1 6.1499 0.1720 3.9267 41 1 8.1409 -2.0823 2.3609 42 1 8.3211 -1.7703 4.1041 43 1 10.3432 -1.0208 1.9441 44 1 10.4950 -2.3823 3.0811 45 1 10.4457 -0.7968 4.9866 46 1 11.7800 -0.4153 3.8724 47 1 10.5621 1.6394 4.5387 48 1 10.3822 1.3277 2.7958 49 1 7.7383 2.5587 2.9013 50 1 6.7114 5.7012 3.3452 51 1 1.6084 -1.7287 1.2980 52 1 1.7630 -0.1669 2.1432 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085354362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:32 Heat of formation + Delta-G solvation = -66.027782 kcal Electronic energy + Delta-G solvation = -30962.801507 eV Core-core repulsion = 26962.006209 eV Total energy + Delta-G solvation = -4000.795298 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.85945 -39.25241 -37.87803 -37.56708 -34.37082 -34.02815 -33.36871 -31.90720 -31.15796 -29.53075 -27.89643 -27.20601 -26.05873 -23.82447 -23.55241 -22.37970 -21.65796 -21.09134 -20.36018 -19.93672 -19.21943 -17.57209 -17.02221 -16.82583 -15.89930 -15.62016 -15.43560 -15.20146 -14.66461 -14.46500 -14.39464 -14.08912 -13.95826 -13.73509 -13.61808 -13.31639 -12.99054 -12.95237 -12.74529 -12.71659 -12.32476 -12.19502 -12.15349 -11.89681 -11.44427 -11.19946 -11.07731 -10.98460 -10.93113 -10.89333 -10.77818 -10.63841 -10.55170 -10.45874 -10.35039 -10.19034 -9.77681 -9.66895 -8.98407 -8.83459 -8.79763 -8.67400 -6.99222 -5.76806 -3.07014 1.63556 2.50242 3.41667 3.44312 3.48928 3.49816 3.67342 4.47085 4.56488 4.63093 4.64514 4.75163 4.96426 5.00261 5.07532 5.18899 5.22329 5.29426 5.37204 5.45269 5.46530 5.51671 5.55277 5.58969 5.65034 5.66768 5.73462 5.80766 5.83354 5.88941 5.89972 5.92620 5.96726 6.00946 6.04734 6.09212 6.26080 6.27202 6.36622 6.40262 6.42511 6.49518 6.54251 6.80620 6.85607 7.01817 7.17318 7.54472 7.68420 7.97605 8.27126 8.40015 9.51882 10.06466 10.41270 11.45167 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009739 B = 0.003703 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.272770 B = 7558.928725 C = 9706.245638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.077 0.923 4 C -0.116 4.116 5 C -0.131 4.131 6 C 0.048 3.952 7 N -0.585 5.585 8 C 0.508 3.492 9 O -0.516 6.516 10 C 0.512 3.488 11 O -0.522 6.522 12 N -0.668 5.668 13 C 0.136 3.864 14 H 0.090 0.910 15 C -0.124 4.124 16 C -0.113 4.113 17 C -0.120 4.120 18 C -0.132 4.132 19 C 0.173 3.827 20 H 0.053 0.947 21 N -0.721 5.721 22 C -0.243 4.243 23 H 0.070 0.930 24 C -0.008 4.008 25 N -0.929 5.929 26 Si 0.906 3.094 27 H -0.286 1.286 28 H -0.292 1.292 29 H -0.286 1.286 30 C 0.113 3.887 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.068 0.932 37 H 0.073 0.927 38 H 0.160 0.840 39 H 0.058 0.942 40 H 0.416 0.584 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.059 0.941 45 H 0.058 0.942 46 H 0.055 0.945 47 H 0.067 0.933 48 H 0.057 0.943 49 H 0.384 0.616 50 H 0.256 0.744 51 H 0.068 0.932 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.626 -16.326 -7.793 18.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.128 4.128 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.169 4.169 6 C -0.073 4.073 7 N -0.318 5.318 8 C 0.291 3.709 9 O -0.391 6.391 10 C 0.294 3.706 11 O -0.402 6.402 12 N -0.317 5.317 13 C 0.032 3.968 14 H 0.108 0.892 15 C -0.163 4.163 16 C -0.151 4.151 17 C -0.159 4.159 18 C -0.173 4.173 19 C 0.062 3.938 20 H 0.071 0.929 21 N -0.362 5.362 22 C -0.374 4.374 23 H 0.088 0.912 24 C -0.205 4.205 25 N -0.577 5.577 26 Si 0.737 3.263 27 H -0.213 1.213 28 H -0.218 1.218 29 H -0.212 1.212 30 C -0.009 4.009 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.176 0.824 39 H 0.076 0.924 40 H 0.253 0.747 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.076 0.924 49 H 0.218 0.782 50 H 0.066 0.934 51 H 0.087 0.913 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.557 -16.170 -7.786 18.788 hybrid contribution -0.527 1.021 0.742 1.368 sum -6.084 -15.149 -7.044 17.780 Atomic orbital electron populations 1.21759 0.94386 1.01889 1.02155 1.21596 0.95879 1.00422 0.94860 0.90484 1.21627 0.95932 1.00427 0.97351 1.21855 0.95242 1.01871 0.97960 1.23269 1.05712 0.95543 0.82736 1.47906 1.06382 1.59165 1.18384 1.20189 0.88209 0.78669 0.83858 1.90775 1.75039 1.46314 1.26948 1.20002 0.87588 0.78296 0.84742 1.90246 1.74633 1.49880 1.25480 1.45803 1.07276 1.65194 1.13428 1.21532 0.77543 0.95670 1.02095 0.89214 1.21882 0.95987 0.96494 1.01981 1.21468 0.94489 0.99285 0.99836 1.21594 0.99354 0.96207 0.98718 1.22221 0.97869 0.95068 1.02186 1.20472 0.91580 0.86229 0.95525 0.92933 1.42397 1.73587 1.08578 1.11652 1.19141 1.34771 0.93035 0.90480 0.91184 1.24730 1.01412 0.97660 0.96676 1.69653 1.46898 1.19580 1.21560 0.86299 0.77566 0.80651 0.81824 1.21299 1.21758 1.21221 1.21848 0.79026 1.00808 0.99233 0.92579 0.92302 0.92297 0.91818 0.91985 0.91340 0.90809 0.82373 0.92356 0.74670 0.91773 0.91760 0.91851 0.92231 0.92306 0.92578 0.91430 0.92373 0.78171 0.93450 0.91327 0.88899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.17 9.20 37.16 0.34 -0.83 16 2 C -0.11 -1.11 2.89 -90.27 -0.26 -1.37 16 3 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 4 C -0.12 -1.05 5.17 -26.69 -0.14 -1.19 16 5 C -0.13 -1.37 6.08 -26.61 -0.16 -1.53 16 6 C 0.05 0.57 6.27 -3.71 -0.02 0.55 16 7 N -0.58 -8.07 2.97 -173.02 -0.51 -8.58 16 8 C 0.51 8.52 7.74 -11.59 -0.09 8.43 16 9 O -0.52 -9.93 15.94 5.50 0.09 -9.84 16 10 C 0.51 8.69 7.74 -11.59 -0.09 8.60 16 11 O -0.52 -8.91 12.76 5.49 0.07 -8.84 16 12 N -0.67 -11.38 4.90 -54.23 -0.27 -11.64 16 13 C 0.14 2.24 1.98 -67.93 -0.13 2.10 16 14 H 0.09 1.62 7.58 -51.93 -0.39 1.23 16 15 C -0.12 -1.66 5.49 -26.73 -0.15 -1.80 16 16 C -0.11 -1.36 5.92 -26.73 -0.16 -1.52 16 17 C -0.12 -1.57 5.92 -26.73 -0.16 -1.73 16 18 C -0.13 -2.22 5.50 -26.74 -0.15 -2.37 16 19 C 0.17 3.21 2.29 -67.93 -0.16 3.06 16 20 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 21 N -0.72 -17.34 4.95 -53.43 -0.26 -17.60 16 22 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 23 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 24 C -0.01 -0.23 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -28.02 13.06 55.49 0.72 -27.30 16 26 Si 0.91 22.36 29.55 -169.99 -5.02 17.33 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 29 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 30 C 0.11 1.33 5.72 -3.49 -0.02 1.31 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.16 2.19 3.78 -56.76 -0.21 1.97 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.42 7.43 8.09 -40.82 -0.33 7.10 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 48 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 49 H 0.38 10.17 7.80 -40.82 -0.32 9.85 16 50 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 51 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 52 H 0.09 1.23 7.05 -51.92 -0.37 0.87 16 LS Contribution 403.88 15.07 6.09 6.09 Total: -1.00 -30.45 403.88 -9.88 -40.33 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: -9.20 Total: 15.37 kcal Atomic # 6 Polarization: 6.27 SS G_CDS: -1.59 Total: 4.68 kcal Atomic # 7 Polarization: -64.80 SS G_CDS: -0.32 Total: -65.12 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.16 Total: -18.68 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -30.45 -9.88 -40.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085354362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.697 kcal (2) G-P(sol) polarization free energy of solvation -30.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds