Wall clock time and date at job start Tue Mar 31 2020 22:17:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 115.55669 * 2 1 4 4 C 1.53001 * 117.52020 * 214.29479 * 2 1 3 5 5 C 1.53003 * 60.00277 * 252.52525 * 4 2 1 6 6 H 1.08991 * 117.52112 * 107.47829 * 5 4 2 7 7 C 1.50705 * 117.49156 * 252.51365 * 5 4 2 8 8 O 1.21276 * 120.00374 * 68.62383 * 7 5 4 9 9 N 1.34778 * 119.99371 * 248.61400 * 7 5 4 10 10 C 1.47019 * 125.65277 * 359.97438 * 9 7 5 11 11 C 1.54321 * 107.27531 * 178.97403 * 10 9 7 12 12 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 13 13 C 1.53003 * 110.72129 * 219.26706 * 11 10 9 14 14 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 15 15 H 1.09001 * 111.00741 * 277.51995 * 14 11 10 16 16 C 1.53000 * 111.00230 * 153.66249 * 14 11 10 17 17 C 1.53007 * 109.46856 * 174.99947 * 16 14 11 18 18 N 1.46901 * 109.46799 * 179.97438 * 17 16 14 19 19 C 1.46900 * 110.99598 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.46982 * 180.02562 * 19 18 17 21 21 O 1.21290 * 119.99920 * 0.02562 * 20 19 18 22 22 N 1.34777 * 120.00004 * 179.97438 * 20 19 18 23 23 C 1.37094 * 120.00049 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00060 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00222 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99617 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00164 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47253 * 89.99907 * 27 25 23 29 29 H 1.48500 * 109.47623 * 209.99956 * 27 25 23 30 30 H 1.48505 * 109.47454 * 329.99999 * 27 25 23 31 31 C 1.47431 * 125.64579 * 180.02562 * 9 7 5 32 32 H 1.08996 * 109.47203 * 274.33379 * 1 2 3 33 33 H 1.09000 * 109.46932 * 34.33011 * 1 2 3 34 34 H 1.08995 * 109.47404 * 154.32797 * 1 2 3 35 35 H 1.08991 * 117.50436 * 145.03323 * 4 2 1 36 36 H 1.09002 * 117.49411 * 0.02562 * 4 2 1 37 37 H 1.09001 * 109.88251 * 59.55144 * 10 9 7 38 38 H 1.09004 * 109.88394 * 298.39057 * 10 9 7 39 39 H 1.08995 * 109.46744 * 56.15366 * 13 11 10 40 40 H 1.09003 * 109.46886 * 176.15524 * 13 11 10 41 41 H 1.08993 * 109.46803 * 296.15500 * 13 11 10 42 42 H 1.08995 * 109.47545 * 294.99634 * 16 14 11 43 43 H 1.08993 * 109.47160 * 55.00331 * 16 14 11 44 44 H 1.08993 * 109.47522 * 300.00197 * 17 16 14 45 45 H 1.09003 * 109.46991 * 60.00326 * 17 16 14 46 46 H 1.00895 * 111.00544 * 303.95567 * 18 17 16 47 47 H 1.09001 * 109.47645 * 300.00372 * 19 18 17 48 48 H 1.09000 * 109.47155 * 60.00723 * 19 18 17 49 49 H 0.97003 * 120.00295 * 0.02562 * 22 20 19 50 50 H 0.97004 * 119.99046 * 180.02562 * 26 25 23 51 51 H 1.08999 * 110.36190 * 322.93058 * 31 9 7 52 52 H 1.08998 * 110.36491 * 85.14737 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 1.6111 -1.8580 1.2690 7 6 3.5290 -0.7805 1.4616 8 8 3.9713 0.3471 1.4020 9 7 4.1933 -1.7295 2.1506 10 6 3.7722 -3.1296 2.3044 11 6 4.8508 -3.8426 3.1469 12 1 4.5631 -3.8708 4.1979 13 6 5.1034 -5.2563 2.6188 14 6 6.1030 -2.9491 2.9442 15 1 6.6109 -3.1939 2.0114 16 6 7.0584 -3.0660 4.1335 17 6 8.3336 -2.2718 3.8431 18 7 9.2507 -2.3836 4.9852 19 6 10.4887 -1.6312 4.7418 20 6 11.4028 -1.7695 5.9319 21 8 11.0572 -2.4303 6.8885 22 7 12.6048 -1.1598 5.9328 23 6 13.4366 -1.2861 7.0152 24 1 13.1289 -1.8745 7.8670 25 6 14.6757 -0.6571 7.0164 26 7 15.0498 0.0592 5.9802 27 14 15.8093 -0.8297 8.4909 28 1 16.6876 -2.0126 8.3043 29 1 16.6445 0.3915 8.6191 30 1 14.9974 -1.0054 9.7219 31 6 5.4621 -1.5350 2.8757 32 1 -0.3633 0.0777 1.0247 33 1 -0.3633 0.8487 -0.5796 34 1 -0.3634 -0.9262 -0.4452 35 1 3.1721 -0.8752 -1.2675 36 1 1.6120 -1.8585 -1.2681 37 1 3.6936 -3.6028 1.3256 38 1 2.8117 -3.1736 2.8180 39 1 5.3772 -5.2068 1.5650 40 1 5.9145 -5.7156 3.1839 41 1 4.1985 -5.8532 2.7316 42 1 6.5775 -2.6672 5.0266 43 1 7.3118 -4.1138 4.2943 44 1 8.8146 -2.6705 2.9501 45 1 8.0802 -1.2239 3.6823 46 1 8.8051 -2.0798 5.8380 47 1 10.9851 -2.0253 3.8550 48 1 10.2499 -0.5790 4.5871 49 1 12.8814 -0.6317 5.1676 50 1 15.9150 0.4980 5.9809 51 1 6.1108 -0.8511 2.3283 52 1 5.2711 -1.1544 3.8791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001104497409.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:17 Heat of formation + Delta-G solvation = -62.507703 kcal Electronic energy + Delta-G solvation = -28381.529399 eV Core-core repulsion = 24380.886743 eV Total energy + Delta-G solvation = -4000.642655 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.70200 -38.94832 -38.23181 -36.93414 -35.83229 -33.93223 -33.44296 -31.88093 -31.17011 -29.46572 -28.37335 -26.81374 -26.26746 -24.66651 -23.63286 -22.71726 -21.33239 -21.10700 -20.46433 -19.39292 -19.18298 -17.86152 -17.63078 -16.69991 -16.13042 -15.91917 -15.65523 -15.09579 -14.81506 -14.49861 -14.35993 -14.26964 -14.09614 -13.91124 -13.63167 -13.54045 -13.45781 -13.26431 -13.00488 -12.75872 -12.68221 -12.36114 -12.26675 -11.98908 -11.93886 -11.82752 -11.51804 -11.47120 -11.37984 -11.04930 -11.03174 -10.82036 -10.79053 -10.60216 -10.51506 -10.37889 -10.19766 -10.08913 -9.49011 -8.97642 -8.43742 -8.02998 -7.93640 -6.39767 -3.80560 2.15935 2.56932 3.19429 3.27834 3.33766 3.37796 3.89531 3.93524 4.05813 4.12105 4.23851 4.30089 4.33167 4.36422 4.52037 4.67781 4.80864 4.86608 4.94562 5.04038 5.07394 5.08684 5.14575 5.22458 5.24760 5.24890 5.26383 5.29671 5.37899 5.41605 5.48407 5.50194 5.57771 5.59878 5.63252 5.68151 5.79043 5.82782 5.85158 5.88642 5.98650 6.00966 6.12277 6.16847 6.30115 7.17512 7.24747 7.57025 7.69404 7.85858 8.08448 8.63514 9.19848 9.56620 10.08150 10.78013 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.001605 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.866341 B =17441.397568 C =18347.957037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.122 4.122 3 H 0.117 0.883 4 C -0.148 4.148 5 C -0.188 4.188 6 H 0.122 0.878 7 C 0.557 3.443 8 O -0.540 6.540 9 N -0.616 5.616 10 C 0.105 3.895 11 C -0.100 4.100 12 H 0.088 0.912 13 C -0.142 4.142 14 C -0.093 4.093 15 H 0.088 0.912 16 C -0.104 4.104 17 C 0.057 3.943 18 N -0.670 5.670 19 C 0.050 3.950 20 C 0.441 3.559 21 O -0.584 6.584 22 N -0.564 5.564 23 C -0.300 4.300 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.902 5.902 27 Si 0.931 3.069 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 C 0.108 3.892 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.104 0.896 37 H 0.071 0.929 38 H 0.067 0.933 39 H 0.057 0.943 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.070 0.930 45 H 0.026 0.974 46 H 0.348 0.652 47 H 0.085 0.915 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.079 0.921 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.525 -5.908 -14.693 32.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.141 4.141 3 H 0.135 0.865 4 C -0.185 4.185 5 C -0.210 4.210 6 H 0.140 0.860 7 C 0.346 3.654 8 O -0.417 6.417 9 N -0.350 5.350 10 C -0.018 4.018 11 C -0.119 4.119 12 H 0.107 0.893 13 C -0.200 4.200 14 C -0.113 4.113 15 H 0.106 0.894 16 C -0.142 4.142 17 C -0.072 4.072 18 N -0.302 5.302 19 C -0.082 4.082 20 C 0.226 3.774 21 O -0.468 6.468 22 N -0.201 5.201 23 C -0.429 4.429 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.543 5.543 27 Si 0.758 3.242 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.194 1.194 31 C -0.014 4.014 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.117 0.883 36 H 0.123 0.877 37 H 0.089 0.911 38 H 0.085 0.915 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.084 0.916 43 H 0.099 0.901 44 H 0.089 0.911 45 H 0.044 0.956 46 H 0.167 0.833 47 H 0.103 0.897 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.097 0.903 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -28.115 -6.165 -14.351 32.163 hybrid contribution 0.568 1.117 0.360 1.304 sum -27.547 -5.048 -13.991 31.306 Atomic orbital electron populations 1.21401 0.92111 1.02291 1.02260 1.22403 0.95296 0.95129 1.01263 0.86454 1.23103 1.03187 1.01579 0.90640 1.22274 0.97496 1.05379 0.95802 0.86036 1.19345 0.84479 0.83708 0.77890 1.90717 1.68598 1.20622 1.61731 1.48381 1.24427 1.10394 1.51755 1.22161 0.98086 0.81190 1.00324 1.22277 0.94201 0.95212 1.00213 0.89343 1.21761 1.02150 0.94739 1.01330 1.22541 0.95059 0.93470 1.00210 0.89374 1.21487 0.94092 1.02185 0.96485 1.22002 0.92641 0.97754 0.94836 1.60077 1.05284 1.59965 1.04865 1.21668 0.91765 0.96042 0.98758 1.19826 0.83689 0.84782 0.89063 1.90515 1.75426 1.44039 1.36822 1.41868 1.14379 1.45037 1.18796 1.19711 0.96508 1.29626 0.97096 0.87922 1.25265 0.97849 0.96403 0.98443 1.69620 1.22176 1.32733 1.29791 0.85851 0.79672 0.77590 0.81123 1.20395 1.20952 1.19436 1.22480 0.84442 0.97703 0.96789 0.91918 0.91557 0.92327 0.88252 0.87719 0.91086 0.91469 0.92359 0.91491 0.92357 0.91570 0.90068 0.91133 0.95560 0.83253 0.89657 0.93906 0.77452 0.91892 0.90279 0.91180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 10.19 37.16 0.38 -0.24 16 2 C -0.12 -0.88 5.92 -90.62 -0.54 -1.42 16 3 H 0.12 1.07 7.67 -51.93 -0.40 0.67 16 4 C -0.15 -0.93 9.88 -26.73 -0.26 -1.19 16 5 C -0.19 -1.43 5.26 -91.76 -0.48 -1.91 16 6 H 0.12 0.69 7.74 -51.93 -0.40 0.29 16 7 C 0.56 6.15 7.63 -10.98 -0.08 6.06 16 8 O -0.54 -8.14 16.51 5.56 0.09 -8.05 16 9 N -0.62 -5.74 3.33 -170.20 -0.57 -6.31 16 10 C 0.11 0.66 5.88 -3.07 -0.02 0.64 16 11 C -0.10 -0.62 3.00 -88.78 -0.27 -0.89 16 12 H 0.09 0.55 8.04 -51.93 -0.42 0.13 16 13 C -0.14 -0.75 9.14 37.16 0.34 -0.42 16 14 C -0.09 -0.73 2.47 -88.20 -0.22 -0.95 16 15 H 0.09 0.71 8.05 -51.93 -0.42 0.29 16 16 C -0.10 -0.98 4.99 -26.73 -0.13 -1.12 16 17 C 0.06 0.68 5.59 -3.82 -0.02 0.66 16 18 N -0.67 -10.85 6.13 -115.05 -0.70 -11.55 16 19 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 20 C 0.44 10.61 7.82 -10.98 -0.09 10.53 16 21 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 22 N -0.56 -14.56 5.29 -10.96 -0.06 -14.62 16 23 C -0.30 -8.49 9.68 -14.93 -0.14 -8.63 16 24 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 25 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 26 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 27 Si 0.93 21.27 29.55 -169.99 -5.02 16.24 16 28 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 30 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 31 C 0.11 1.04 5.90 -2.26 -0.01 1.03 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.23 7.90 -51.93 -0.41 -0.18 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.10 0.44 8.05 -51.93 -0.42 0.03 16 37 H 0.07 0.38 7.80 -51.93 -0.41 -0.02 16 38 H 0.07 0.35 8.06 -51.93 -0.42 -0.07 16 39 H 0.06 0.31 8.12 -51.93 -0.42 -0.12 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 42 H 0.07 0.63 7.98 -51.93 -0.41 0.21 16 43 H 0.08 0.80 8.13 -51.93 -0.42 0.38 16 44 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 45 H 0.03 0.31 7.77 -51.93 -0.40 -0.09 16 46 H 0.35 5.81 8.43 -39.29 -0.33 5.48 16 47 H 0.09 1.43 8.14 -51.93 -0.42 1.01 16 48 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 49 H 0.39 9.69 7.90 -40.82 -0.32 9.36 16 50 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 51 H 0.08 0.88 8.04 -51.93 -0.42 0.47 16 52 H 0.07 0.70 7.93 -51.93 -0.41 0.29 16 LS Contribution 424.16 15.07 6.39 6.39 Total: -1.00 -33.93 424.16 -10.06 -43.98 By element: Atomic # 1 Polarization: 19.80 SS G_CDS: -9.32 Total: 10.48 kcal Atomic # 6 Polarization: 5.22 SS G_CDS: -1.68 Total: 3.54 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.60 Total: -56.60 kcal Atomic # 8 Polarization: -24.22 SS G_CDS: 0.18 Total: -24.04 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.39 Total: 6.39 kcal Total: -33.93 -10.06 -43.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104497409.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.523 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds