Wall clock time and date at job start Tue Mar 31 2020 22:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 115.55669 * 2 1 4 4 C 1.53001 * 117.52020 * 214.29479 * 2 1 3 5 5 C 1.53003 * 60.00277 * 252.52525 * 4 2 1 6 6 H 1.08991 * 117.52112 * 107.47829 * 5 4 2 7 7 C 1.50705 * 117.49156 * 252.51365 * 5 4 2 8 8 O 1.21276 * 120.00374 * 68.62383 * 7 5 4 9 9 N 1.34778 * 119.99371 * 248.61400 * 7 5 4 10 10 C 1.47019 * 125.65277 * 359.97438 * 9 7 5 11 11 C 1.54321 * 107.27531 * 178.97403 * 10 9 7 12 12 H 1.09002 * 110.72109 * 96.17040 * 11 10 9 13 13 C 1.53003 * 110.72129 * 219.26706 * 11 10 9 14 14 C 1.55157 * 103.10033 * 337.71659 * 11 10 9 15 15 H 1.09001 * 111.00741 * 277.51995 * 14 11 10 16 16 C 1.53000 * 111.00230 * 153.66249 * 14 11 10 17 17 C 1.53007 * 109.46856 * 174.99947 * 16 14 11 18 18 N 1.46901 * 109.46799 * 179.97438 * 17 16 14 19 19 C 1.46900 * 110.99598 * 180.02562 * 18 17 16 20 20 C 1.50702 * 109.46982 * 180.02562 * 19 18 17 21 21 O 1.21290 * 119.99920 * 0.02562 * 20 19 18 22 22 N 1.34777 * 120.00004 * 179.97438 * 20 19 18 23 23 C 1.37094 * 120.00049 * 180.02562 * 22 20 19 24 24 H 1.08003 * 120.00060 * 0.02562 * 23 22 20 25 25 C 1.38954 * 120.00222 * 180.02562 * 23 22 20 26 26 N 1.31414 * 119.99617 * 0.02562 * 25 23 22 27 27 Si 1.86795 * 120.00164 * 180.02562 * 25 23 22 28 28 H 1.48507 * 109.47253 * 89.99907 * 27 25 23 29 29 H 1.48500 * 109.47623 * 209.99956 * 27 25 23 30 30 H 1.48505 * 109.47454 * 329.99999 * 27 25 23 31 31 C 1.47431 * 125.64579 * 180.02562 * 9 7 5 32 32 H 1.08996 * 109.47203 * 274.33379 * 1 2 3 33 33 H 1.09000 * 109.46932 * 34.33011 * 1 2 3 34 34 H 1.08995 * 109.47404 * 154.32797 * 1 2 3 35 35 H 1.08991 * 117.50436 * 145.03323 * 4 2 1 36 36 H 1.09002 * 117.49411 * 0.02562 * 4 2 1 37 37 H 1.09001 * 109.88251 * 59.55144 * 10 9 7 38 38 H 1.09004 * 109.88394 * 298.39057 * 10 9 7 39 39 H 1.08995 * 109.46744 * 56.15366 * 13 11 10 40 40 H 1.09003 * 109.46886 * 176.15524 * 13 11 10 41 41 H 1.08993 * 109.46803 * 296.15500 * 13 11 10 42 42 H 1.08995 * 109.47545 * 294.99634 * 16 14 11 43 43 H 1.08993 * 109.47160 * 55.00331 * 16 14 11 44 44 H 1.08993 * 109.47522 * 300.00197 * 17 16 14 45 45 H 1.09003 * 109.46991 * 60.00326 * 17 16 14 46 46 H 1.00895 * 111.00544 * 303.95567 * 18 17 16 47 47 H 1.09001 * 109.47645 * 300.00372 * 19 18 17 48 48 H 1.09000 * 109.47155 * 60.00723 * 19 18 17 49 49 H 0.97003 * 120.00295 * 0.02562 * 22 20 19 50 50 H 0.97004 * 119.99046 * 180.02562 * 26 25 23 51 51 H 1.08999 * 110.36190 * 322.93058 * 31 9 7 52 52 H 1.08998 * 110.36491 * 85.14737 * 31 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0002 0.9834 0.0000 4 6 2.2369 -1.1210 -0.7645 5 6 2.2364 -1.1208 0.7655 6 1 1.6111 -1.8580 1.2690 7 6 3.5290 -0.7805 1.4616 8 8 3.9713 0.3471 1.4020 9 7 4.1933 -1.7295 2.1506 10 6 3.7722 -3.1296 2.3044 11 6 4.8508 -3.8426 3.1469 12 1 4.5631 -3.8708 4.1979 13 6 5.1034 -5.2563 2.6188 14 6 6.1030 -2.9491 2.9442 15 1 6.6109 -3.1939 2.0114 16 6 7.0584 -3.0660 4.1335 17 6 8.3336 -2.2718 3.8431 18 7 9.2507 -2.3836 4.9852 19 6 10.4887 -1.6312 4.7418 20 6 11.4028 -1.7695 5.9319 21 8 11.0572 -2.4303 6.8885 22 7 12.6048 -1.1598 5.9328 23 6 13.4366 -1.2861 7.0152 24 1 13.1289 -1.8745 7.8670 25 6 14.6757 -0.6571 7.0164 26 7 15.0498 0.0592 5.9802 27 14 15.8093 -0.8297 8.4909 28 1 16.6876 -2.0126 8.3043 29 1 16.6445 0.3915 8.6191 30 1 14.9974 -1.0054 9.7219 31 6 5.4621 -1.5350 2.8757 32 1 -0.3633 0.0777 1.0247 33 1 -0.3633 0.8487 -0.5796 34 1 -0.3634 -0.9262 -0.4452 35 1 3.1721 -0.8752 -1.2675 36 1 1.6120 -1.8585 -1.2681 37 1 3.6936 -3.6028 1.3256 38 1 2.8117 -3.1736 2.8180 39 1 5.3772 -5.2068 1.5650 40 1 5.9145 -5.7156 3.1839 41 1 4.1985 -5.8532 2.7316 42 1 6.5775 -2.6672 5.0266 43 1 7.3118 -4.1138 4.2943 44 1 8.8146 -2.6705 2.9501 45 1 8.0802 -1.2239 3.6823 46 1 8.8051 -2.0798 5.8380 47 1 10.9851 -2.0253 3.8550 48 1 10.2499 -0.5790 4.5871 49 1 12.8814 -0.6317 5.1676 50 1 15.9150 0.4980 5.9809 51 1 6.1108 -0.8511 2.3283 52 1 5.2711 -1.1544 3.8791 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001104497409.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:14 Heat of formation + Delta-G solvation = -85.428272 kcal Electronic energy + Delta-G solvation = -28382.523309 eV Core-core repulsion = 24380.886743 eV Total energy + Delta-G solvation = -4001.636566 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.43669 -40.18843 -39.57288 -37.64114 -37.05837 -35.90491 -34.33181 -33.29652 -32.62149 -30.12415 -29.26654 -27.72841 -27.29026 -26.06676 -24.71350 -23.58283 -22.09254 -21.65972 -21.23923 -20.93169 -20.06939 -19.91174 -18.33380 -17.82104 -17.42719 -17.08200 -16.68742 -16.50386 -16.01030 -15.81470 -15.51431 -15.33360 -14.94397 -14.91045 -14.66113 -14.44543 -14.41404 -14.04141 -13.81317 -13.57324 -13.54445 -13.39454 -13.36525 -13.15019 -12.91570 -12.88218 -12.67278 -12.47191 -12.42772 -12.33007 -12.14102 -12.12490 -11.66039 -11.57573 -11.51430 -11.37235 -11.29871 -11.08308 -10.85581 -10.36330 -10.03265 -9.73010 -9.34812 -8.47831 -5.97029 1.37676 1.38417 1.41319 1.54414 1.87213 2.03163 2.28507 2.81256 2.89313 3.19243 3.30743 3.48544 3.55632 3.69217 3.74756 3.78794 3.84110 4.12070 4.19071 4.23680 4.28215 4.34876 4.37723 4.40018 4.47841 4.52098 4.56740 4.60838 4.67072 4.68581 4.72340 4.83210 4.85426 4.88810 4.92364 4.92975 5.00855 5.10913 5.19383 5.20238 5.24003 5.27229 5.39519 5.40066 5.43116 5.51943 5.87925 6.09131 6.39557 6.44611 6.58343 7.05638 7.10837 7.54176 8.09194 8.69592 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.021719 B = 0.001605 C = 0.001526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1288.866341 B =17441.397568 C =18347.957037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.133 4.133 3 H 0.088 0.912 4 C -0.133 4.133 5 C -0.190 4.190 6 H 0.148 0.852 7 C 0.545 3.455 8 O -0.594 6.594 9 N -0.615 5.615 10 C 0.103 3.897 11 C -0.093 4.093 12 H 0.092 0.908 13 C -0.139 4.139 14 C -0.082 4.082 15 H 0.090 0.910 16 C -0.095 4.095 17 C 0.059 3.941 18 N -0.681 5.681 19 C 0.064 3.936 20 C 0.437 3.563 21 O -0.622 6.622 22 N -0.573 5.573 23 C -0.336 4.336 24 H 0.080 0.920 25 C -0.013 4.013 26 N -0.921 5.921 27 Si 0.995 3.005 28 H -0.270 1.270 29 H -0.271 1.271 30 H -0.272 1.272 31 C 0.104 3.896 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.135 0.865 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.060 0.940 40 H 0.060 0.940 41 H 0.073 0.927 42 H 0.065 0.935 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.029 0.971 46 H 0.343 0.657 47 H 0.103 0.897 48 H 0.062 0.938 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.057 0.943 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.007 -7.502 -15.573 34.630 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 H 0.106 0.894 4 C -0.171 4.171 5 C -0.210 4.210 6 H 0.166 0.834 7 C 0.336 3.664 8 O -0.476 6.476 9 N -0.347 5.347 10 C -0.019 4.019 11 C -0.112 4.112 12 H 0.110 0.890 13 C -0.196 4.196 14 C -0.101 4.101 15 H 0.109 0.891 16 C -0.133 4.133 17 C -0.070 4.070 18 N -0.314 5.314 19 C -0.069 4.069 20 C 0.225 3.775 21 O -0.509 6.509 22 N -0.210 5.210 23 C -0.466 4.466 24 H 0.098 0.902 25 C -0.213 4.213 26 N -0.561 5.561 27 Si 0.818 3.182 28 H -0.195 1.195 29 H -0.195 1.195 30 H -0.197 1.197 31 C -0.018 4.018 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.103 0.897 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.104 0.896 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.095 0.905 45 H 0.047 0.953 46 H 0.162 0.838 47 H 0.121 0.879 48 H 0.079 0.921 49 H 0.230 0.770 50 H 0.087 0.913 51 H 0.075 0.925 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -29.611 -7.789 -15.260 34.210 hybrid contribution 1.018 1.621 0.617 2.011 sum -28.593 -6.168 -14.643 32.711 Atomic orbital electron populations 1.21388 0.90089 1.03447 1.02546 1.22422 0.96754 0.94024 1.01952 0.89384 1.23190 1.02789 1.01430 0.89653 1.22325 0.96021 1.06189 0.96509 0.83396 1.20047 0.85436 0.83177 0.77731 1.90684 1.70189 1.22898 1.63806 1.48508 1.23928 1.11543 1.50740 1.22390 0.98767 0.79185 1.01523 1.22262 0.92927 0.95426 1.00604 0.89017 1.21739 1.02692 0.93943 1.01252 1.22414 0.95445 0.92738 0.99538 0.89130 1.21392 0.93138 1.01604 0.97162 1.22103 0.92916 0.98516 0.93473 1.60112 1.05446 1.59730 1.06076 1.21535 0.91544 0.97667 0.96129 1.20863 0.83534 0.83013 0.90118 1.90481 1.76167 1.45382 1.38860 1.41944 1.14974 1.45644 1.18475 1.19699 0.98074 1.31112 0.97700 0.90223 1.26073 0.98593 0.95461 1.01158 1.69683 1.22763 1.32661 1.31043 0.84900 0.77599 0.78167 0.77489 1.19537 1.19536 1.19714 1.22450 0.84816 0.98435 0.96148 0.91926 0.91262 0.90440 0.89682 0.84678 0.89427 0.89585 0.92111 0.92133 0.90826 0.91593 0.90028 0.90473 0.95281 0.83818 0.87871 0.92056 0.77014 0.91282 0.92473 0.91825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.96 10.19 71.98 0.73 -0.23 16 2 C -0.13 -1.84 5.92 -10.79 -0.06 -1.90 16 3 H 0.09 1.74 7.67 -2.39 -0.02 1.72 16 4 C -0.13 -1.45 9.88 30.60 0.30 -1.15 16 5 C -0.19 -2.61 5.26 -11.53 -0.06 -2.67 16 6 H 0.15 1.21 7.74 -2.39 -0.02 1.19 16 7 C 0.55 12.10 7.63 87.66 0.67 12.77 16 8 O -0.59 -19.02 16.51 -3.02 -0.05 -19.07 16 9 N -0.62 -11.00 3.33 -810.79 -2.70 -13.70 16 10 C 0.10 1.02 5.88 86.73 0.51 1.53 16 11 C -0.09 -0.94 3.00 -9.60 -0.03 -0.97 16 12 H 0.09 0.91 8.04 -2.39 -0.02 0.89 16 13 C -0.14 -1.08 9.14 71.98 0.66 -0.42 16 14 C -0.08 -1.19 2.47 -9.23 -0.02 -1.21 16 15 H 0.09 1.31 8.05 -2.39 -0.02 1.29 16 16 C -0.09 -1.69 4.99 30.60 0.15 -1.54 16 17 C 0.06 1.35 5.59 86.31 0.48 1.83 16 18 N -0.68 -21.74 6.13 -517.92 -3.17 -24.91 16 19 C 0.06 2.27 6.17 85.56 0.53 2.80 16 20 C 0.44 21.36 7.82 87.66 0.69 22.05 16 21 O -0.62 -35.13 15.78 -3.06 -0.05 -35.17 16 22 N -0.57 -30.16 5.29 -306.98 -1.62 -31.78 16 23 C -0.34 -19.46 9.68 84.04 0.81 -18.65 16 24 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 25 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 26 N -0.92 -50.45 13.05 21.66 0.28 -50.17 16 27 Si 1.00 43.44 29.55 68.60 2.03 45.46 16 28 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 29 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 30 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 31 C 0.10 2.02 5.90 87.03 0.51 2.53 16 32 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.08 0.35 7.90 -2.39 -0.02 0.33 16 35 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 36 H 0.14 0.66 8.05 -2.39 -0.02 0.64 16 37 H 0.09 0.63 7.80 -2.39 -0.02 0.61 16 38 H 0.09 0.59 8.06 -2.38 -0.02 0.57 16 39 H 0.06 0.46 8.12 -2.39 -0.02 0.44 16 40 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 41 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 42 H 0.07 1.19 7.98 -2.39 -0.02 1.18 16 43 H 0.08 1.49 8.13 -2.39 -0.02 1.47 16 44 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 45 H 0.03 0.67 7.77 -2.39 -0.02 0.65 16 46 H 0.34 11.48 8.43 -89.70 -0.76 10.73 16 47 H 0.10 3.33 8.14 -2.39 -0.02 3.31 16 48 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.40 19.83 7.90 -92.71 -0.73 19.10 16 50 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 51 H 0.06 1.35 8.04 -2.39 -0.02 1.33 16 52 H 0.06 1.30 7.93 -2.39 -0.02 1.28 16 Total: -1.00 -75.93 424.16 0.48 -75.46 By element: Atomic # 1 Polarization: 39.95 SS G_CDS: -0.58 Total: 39.37 kcal Atomic # 6 Polarization: 8.19 SS G_CDS: 6.34 Total: 14.53 kcal Atomic # 7 Polarization: -113.35 SS G_CDS: -7.21 Total: -120.56 kcal Atomic # 8 Polarization: -54.15 SS G_CDS: -0.10 Total: -54.25 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 2.03 Total: 45.46 kcal Total: -75.93 0.48 -75.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001104497409.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.972 kcal (2) G-P(sol) polarization free energy of solvation -75.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.456 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds