Wall clock time and date at job start Tue Mar 31 2020 19:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50697 * 109.47423 * 2 1 4 4 O 1.21290 * 119.99955 * 0.02562 * 3 2 1 5 5 N 1.34776 * 120.00529 * 179.97438 * 3 2 1 6 6 C 1.46500 * 120.00508 * 180.02562 * 5 3 2 7 7 H 1.08992 * 110.66518 * 32.04681 * 6 5 3 8 8 C 1.56679 * 110.60128 * 268.06019 * 6 5 3 9 9 C 1.55847 * 103.67362 * 241.62755 * 8 6 5 10 10 H 1.09007 * 116.14405 * 159.46696 * 9 8 6 11 11 C 1.56221 * 105.11194 * 288.49441 * 9 8 6 12 12 C 1.54839 * 103.34281 * 71.63884 * 11 9 8 13 13 C 1.55843 * 103.65987 * 0.11182 * 12 11 9 14 14 H 1.09001 * 115.58246 * 158.81179 * 13 12 11 15 15 N 1.50645 * 101.03007 * 33.22838 * 9 8 6 16 16 C 1.46898 * 110.99672 * 189.76256 * 15 9 8 17 17 C 1.50700 * 109.47204 * 298.08816 * 16 15 9 18 18 O 1.21281 * 119.99832 * 0.02562 * 17 16 15 19 19 N 1.34776 * 119.99850 * 180.02562 * 17 16 15 20 20 C 1.46492 * 120.00327 * 0.02562 * 19 17 16 21 21 C 1.52998 * 109.47474 * 89.99988 * 20 19 17 22 22 C 1.46503 * 119.99541 * 180.02562 * 19 17 16 23 23 C 1.50700 * 109.47216 * 90.00519 * 22 19 17 24 24 H 1.08005 * 120.00116 * 359.97438 * 23 22 19 25 25 C 1.37880 * 120.00264 * 180.02562 * 23 22 19 26 26 N 1.31507 * 120.00150 * 179.97438 * 25 23 22 27 27 Si 1.86801 * 119.99827 * 359.97438 * 25 23 22 28 28 H 1.48503 * 109.47030 * 89.99979 * 27 25 23 29 29 H 1.48496 * 109.47061 * 210.00324 * 27 25 23 30 30 H 1.48503 * 109.47068 * 330.00197 * 27 25 23 31 31 H 1.09001 * 109.46682 * 299.99859 * 1 2 3 32 32 H 1.09004 * 109.47120 * 59.99404 * 1 2 3 33 33 H 1.08997 * 109.47317 * 179.97438 * 1 2 3 34 34 H 1.09001 * 109.46682 * 240.00141 * 2 1 3 35 35 H 1.08997 * 109.47375 * 120.00346 * 2 1 3 36 36 H 0.97003 * 119.99657 * 0.02562 * 5 3 2 37 37 H 1.09002 * 110.33377 * 123.15757 * 8 6 5 38 38 H 1.09004 * 110.73450 * 0.28302 * 8 6 5 39 39 H 1.09002 * 110.66738 * 313.20415 * 11 9 8 40 40 H 1.08997 * 110.72518 * 190.10048 * 11 9 8 41 41 H 1.09002 * 110.61319 * 241.52402 * 12 11 9 42 42 H 1.08997 * 110.61370 * 118.69770 * 12 11 9 43 43 H 1.08993 * 109.47326 * 58.09360 * 16 15 9 44 44 H 1.09000 * 109.46779 * 178.09088 * 16 15 9 45 45 H 1.09001 * 109.47370 * 210.00383 * 20 19 17 46 46 H 1.09005 * 109.47136 * 329.99766 * 20 19 17 47 47 H 1.08995 * 109.47054 * 59.99640 * 21 20 19 48 48 H 1.09004 * 109.47274 * 180.02562 * 21 20 19 49 49 H 1.09005 * 109.46815 * 300.00179 * 21 20 19 50 50 H 1.09004 * 109.46767 * 209.99583 * 22 19 17 51 51 H 1.08992 * 109.47191 * 329.99684 * 22 19 17 52 52 H 0.97001 * 120.00473 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 8 1.2443 2.3427 0.0005 5 7 3.3575 1.6671 0.0005 6 6 3.8459 3.0483 0.0011 7 1 3.1590 3.6989 0.5422 8 6 4.0770 3.5519 -1.4644 9 6 5.6031 3.8642 -1.5103 10 1 6.0571 3.8969 -2.5008 11 6 5.7813 5.1528 -0.6453 12 6 5.5556 4.6467 0.8005 13 6 5.2750 3.1247 0.6180 14 1 5.4403 2.5065 1.5004 15 7 6.1407 2.8129 -0.5749 16 6 7.5584 3.0519 -0.2733 17 6 8.3633 2.9692 -1.5446 18 8 7.8103 2.7348 -2.5983 19 7 9.6976 3.1558 -1.5107 20 6 10.3657 3.4385 -0.2380 21 6 10.7905 2.1233 0.4182 22 6 10.4800 3.0760 -2.7468 23 6 10.5590 4.4410 -3.3804 24 1 10.0745 5.2838 -2.9096 25 6 11.2489 4.6140 -4.5616 26 7 11.3174 5.8051 -5.1147 27 14 12.0863 3.1564 -5.3761 28 1 11.1390 2.5020 -6.3141 29 1 13.2795 3.6260 -6.1250 30 1 12.5060 2.1823 -4.3367 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 -0.3634 -1.0276 -0.0005 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5139 0.8899 36 1 3.9878 0.9298 0.0005 37 1 3.4947 4.4543 -1.6511 38 1 3.8226 2.7741 -2.1844 39 1 5.0344 5.9009 -0.9111 40 1 6.7874 5.5568 -0.7578 41 1 4.6968 5.1440 1.2514 42 1 6.4489 4.8024 1.4054 43 1 7.6743 4.0425 0.1664 44 1 7.9122 2.2984 0.4304 45 1 11.2460 4.0554 -0.4187 46 1 9.6797 3.9691 0.4225 47 1 11.4764 1.5928 -0.2422 48 1 11.2872 2.3336 1.3655 49 1 9.9102 1.5065 0.5990 50 1 11.4856 2.7230 -2.5181 51 1 9.9996 2.3824 -3.4367 52 1 11.8030 5.9270 -5.9455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110219277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:06 Heat of formation + Delta-G solvation = -71.091861 kcal Electronic energy + Delta-G solvation = -30836.401599 eV Core-core repulsion = 26835.386706 eV Total energy + Delta-G solvation = -4001.014892 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.64 seconds Orbital eigenvalues (eV) -42.26374 -40.63154 -39.97838 -36.95129 -35.50876 -34.86859 -33.69888 -32.72811 -31.74797 -30.83032 -30.06760 -29.68690 -27.21595 -25.35662 -24.42361 -23.88791 -22.84868 -21.42926 -21.09226 -20.70835 -19.67565 -19.11558 -18.13397 -17.98770 -17.59431 -17.10611 -16.94582 -16.56946 -16.34017 -15.93007 -15.63805 -15.29998 -14.78381 -14.69425 -14.58453 -14.42166 -14.27096 -13.94573 -13.67319 -13.50476 -13.37181 -13.23388 -13.14995 -13.04255 -12.78718 -12.60111 -12.58567 -12.54392 -12.36201 -12.27870 -12.15737 -12.02898 -11.99094 -11.88242 -11.76736 -11.75134 -11.40668 -10.84490 -10.75262 -10.54014 -10.01519 -9.56189 -9.36732 -8.35312 -6.39715 1.30518 1.34698 1.42852 1.70733 1.85953 2.21142 2.29198 2.30235 2.91816 2.99381 3.39584 3.53866 3.74973 3.85772 3.89069 4.03500 4.08796 4.15592 4.22744 4.26240 4.31357 4.32239 4.36937 4.39129 4.45439 4.48532 4.65206 4.66014 4.69665 4.80723 4.82265 4.91974 4.94400 4.99145 5.01812 5.02489 5.03316 5.06594 5.09986 5.18353 5.25862 5.35835 5.40583 5.46922 5.50662 5.67002 5.68952 5.87012 6.24204 6.61319 6.66586 6.77104 7.21652 7.34688 7.50073 8.81570 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.016222 B = 0.002741 C = 0.002670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.638604 B =10211.777775 C =10483.147557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.139 4.139 3 C 0.505 3.495 4 O -0.592 6.592 5 N -0.707 5.707 6 C 0.157 3.843 7 H 0.096 0.904 8 C -0.118 4.118 9 C 0.045 3.955 10 H 0.086 0.914 11 C -0.158 4.158 12 C -0.142 4.142 13 C 0.050 3.950 14 H 0.152 0.848 15 N -0.483 5.483 16 C 0.029 3.971 17 C 0.499 3.501 18 O -0.579 6.579 19 N -0.603 5.603 20 C 0.098 3.902 21 C -0.159 4.159 22 C 0.228 3.772 23 C -0.531 4.531 24 H 0.027 0.973 25 C 0.010 3.990 26 N -0.946 5.946 27 Si 0.947 3.053 28 H -0.278 1.278 29 H -0.275 1.275 30 H -0.238 1.238 31 H 0.049 0.951 32 H 0.041 0.959 33 H 0.083 0.917 34 H 0.108 0.892 35 H 0.121 0.879 36 H 0.416 0.584 37 H 0.070 0.930 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.048 0.952 41 H 0.091 0.909 42 H 0.090 0.910 43 H 0.085 0.915 44 H 0.132 0.868 45 H 0.068 0.932 46 H 0.094 0.906 47 H 0.044 0.956 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.046 0.954 51 H 0.015 0.985 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.509 -12.244 20.129 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.179 4.179 3 C 0.293 3.707 4 O -0.472 6.472 5 N -0.358 5.358 6 C 0.051 3.949 7 H 0.114 0.886 8 C -0.157 4.157 9 C -0.064 4.064 10 H 0.104 0.896 11 C -0.197 4.197 12 C -0.181 4.181 13 C -0.058 4.058 14 H 0.169 0.831 15 N -0.206 5.206 16 C -0.102 4.102 17 C 0.288 3.712 18 O -0.459 6.459 19 N -0.334 5.334 20 C -0.024 4.024 21 C -0.217 4.217 22 C 0.105 3.895 23 C -0.569 4.569 24 H 0.045 0.955 25 C -0.188 4.188 26 N -0.586 5.586 27 Si 0.770 3.230 28 H -0.204 1.204 29 H -0.200 1.200 30 H -0.161 1.161 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.102 0.898 34 H 0.127 0.873 35 H 0.139 0.861 36 H 0.252 0.748 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.108 0.892 43 H 0.103 0.897 44 H 0.150 0.850 45 H 0.087 0.913 46 H 0.112 0.888 47 H 0.063 0.937 48 H 0.113 0.887 49 H 0.083 0.917 50 H 0.064 0.936 51 H 0.033 0.967 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.253 -12.255 19.242 26.383 hybrid contribution 1.034 0.937 -1.249 1.873 sum -12.218 -11.318 17.993 24.518 Atomic orbital electron populations 1.21526 0.93682 1.02469 1.01766 1.21690 0.98016 0.91724 1.06447 1.21487 0.82017 0.92874 0.74301 1.90677 1.56451 1.48250 1.51856 1.45957 1.07010 1.08776 1.74070 1.22287 0.94107 0.83762 0.94713 0.88647 1.23274 0.93976 1.00862 0.97596 1.24462 0.95031 0.89688 0.97217 0.89622 1.23369 1.01340 0.98449 0.96556 1.23199 1.03812 0.95673 0.95450 1.24871 0.91116 0.95771 0.94065 0.83060 1.67533 1.00732 1.44215 1.08131 1.22303 0.89544 1.04056 0.94324 1.21150 0.82351 0.76246 0.91450 1.90617 1.70593 1.50221 1.34471 1.48053 1.06925 1.69261 1.09197 1.21756 0.98442 0.98634 0.83554 1.22152 1.01970 0.96429 1.01195 1.19229 0.91464 0.95023 0.83755 1.21540 1.32883 0.94581 1.07931 0.95467 1.25842 0.96836 0.98823 0.97283 1.70046 1.43893 1.24476 1.20173 0.85732 0.78224 0.79588 0.79501 1.20394 1.20035 1.16132 0.93204 0.94020 0.89823 0.87342 0.86103 0.74755 0.91142 0.92444 0.90547 0.93354 0.89087 0.89180 0.89737 0.84994 0.91302 0.88757 0.93713 0.88749 0.91673 0.93649 0.96696 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 9.20 71.98 0.66 -1.26 16 2 C -0.14 -1.69 6.42 29.85 0.19 -1.49 16 3 C 0.50 10.18 7.83 87.66 0.69 10.86 16 4 O -0.59 -17.22 15.63 -3.06 -0.05 -17.27 16 5 N -0.71 -12.39 5.10 -431.87 -2.20 -14.59 16 6 C 0.16 3.17 2.92 47.26 0.14 3.30 16 7 H 0.10 2.04 7.22 -2.39 -0.02 2.02 16 8 C -0.12 -3.10 6.27 32.87 0.21 -2.90 16 9 C 0.04 1.36 4.14 46.28 0.19 1.55 16 10 H 0.09 3.54 6.26 -2.38 -0.01 3.52 16 11 C -0.16 -4.01 5.66 32.34 0.18 -3.83 16 12 C -0.14 -2.41 5.61 32.21 0.18 -2.22 16 13 C 0.05 0.84 4.49 46.14 0.21 1.04 16 14 H 0.15 1.59 8.14 -2.39 -0.02 1.57 16 15 N -0.48 -12.12 5.45 -808.11 -4.41 -16.53 16 16 C 0.03 0.73 3.79 85.56 0.32 1.05 16 17 C 0.50 19.35 7.42 87.66 0.65 20.00 16 18 O -0.58 -28.40 13.74 -3.03 -0.04 -28.44 16 19 N -0.60 -23.56 2.46 -826.17 -2.03 -25.58 16 20 C 0.10 2.70 5.93 86.38 0.51 3.22 16 21 C -0.16 -3.20 10.24 71.98 0.74 -2.46 16 22 C 0.23 11.04 4.23 85.63 0.36 11.40 16 23 C -0.53 -31.18 9.94 25.60 0.25 -30.93 16 24 H 0.03 1.79 8.06 -2.91 -0.02 1.76 16 25 C 0.01 0.59 5.47 84.66 0.46 1.06 16 26 N -0.95 -60.10 13.96 21.45 0.30 -59.80 16 27 Si 0.95 44.81 27.47 68.60 1.88 46.70 16 28 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 29 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 30 H -0.24 -10.10 6.54 99.48 0.65 -9.45 16 31 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 32 H 0.04 0.74 8.10 -2.38 -0.02 0.72 16 33 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 34 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.42 5.63 8.66 -92.71 -0.80 4.83 16 37 H 0.07 1.84 7.83 -2.39 -0.02 1.82 16 38 H 0.06 1.69 8.01 -2.39 -0.02 1.67 16 39 H 0.08 1.86 7.83 -2.39 -0.02 1.84 16 40 H 0.05 1.42 7.36 -2.39 -0.02 1.41 16 41 H 0.09 1.31 7.80 -2.39 -0.02 1.29 16 42 H 0.09 1.26 7.19 -2.39 -0.02 1.24 16 43 H 0.09 1.94 4.13 -2.39 -0.01 1.93 16 44 H 0.13 2.44 7.19 -2.39 -0.02 2.43 16 45 H 0.07 2.10 8.07 -2.39 -0.02 2.08 16 46 H 0.09 2.02 6.44 -2.38 -0.02 2.01 16 47 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 49 H 0.06 1.16 7.22 -2.38 -0.02 1.14 16 50 H 0.05 2.04 7.13 -2.39 -0.02 2.02 16 51 H 0.01 0.79 6.85 -2.39 -0.02 0.77 16 52 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -83.69 400.71 -0.53 -84.22 By element: Atomic # 1 Polarization: 22.84 SS G_CDS: 0.06 Total: 22.90 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: 5.95 Total: 8.40 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -8.34 Total: -116.50 kcal Atomic # 8 Polarization: -45.63 SS G_CDS: -0.09 Total: -45.71 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.88 Total: 46.70 kcal Total: -83.69 -0.53 -84.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110219277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.128 kcal (2) G-P(sol) polarization free energy of solvation -83.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.64 seconds