Wall clock time and date at job start Tue Mar 31 2020 21:15:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.01424 * 2 1 4 4 C 1.54270 * 110.03115 * 121.43433 * 2 1 3 5 5 C 1.55028 * 104.27571 * 142.80867 * 4 2 1 6 6 C 1.54886 * 102.68530 * 322.23191 * 5 4 2 7 7 H 1.09001 * 110.48939 * 279.02751 * 6 5 4 8 8 C 1.53005 * 110.48892 * 156.52007 * 6 5 4 9 9 C 1.50701 * 109.46906 * 68.24279 * 8 6 5 10 10 O 1.21273 * 120.00146 * 0.02562 * 9 8 6 11 11 N 1.34781 * 119.99433 * 180.02562 * 9 8 6 12 12 C 1.47077 * 120.88361 * 359.72042 * 11 9 8 13 13 C 1.53704 * 108.27340 * 128.75696 * 12 11 9 14 14 N 1.46900 * 109.25819 * 54.08003 * 13 12 11 15 15 C 1.46899 * 110.99671 * 172.60917 * 14 13 12 16 16 C 1.50693 * 109.47267 * 59.56022 * 15 14 13 17 17 O 1.21290 * 120.00306 * 5.59757 * 16 15 14 18 18 N 1.34782 * 120.00022 * 185.59470 * 16 15 14 19 19 C 1.37097 * 120.00300 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00140 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00059 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00120 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47223 * 89.99716 * 23 21 19 25 25 H 1.48495 * 109.47217 * 210.00156 * 23 21 19 26 26 H 1.48508 * 109.46767 * 330.00012 * 23 21 19 27 27 C 1.46894 * 111.26917 * 296.75699 * 14 13 12 28 28 C 1.47080 * 120.87764 * 179.97438 * 11 9 8 29 29 C 1.53875 * 110.03521 * 238.60723 * 2 1 3 30 30 H 1.09004 * 109.46508 * 181.39557 * 1 2 3 31 31 H 1.08999 * 109.47275 * 301.39304 * 1 2 3 32 32 H 1.09000 * 109.47108 * 61.40218 * 1 2 3 33 33 H 1.08997 * 110.48609 * 261.57643 * 4 2 1 34 34 H 1.08992 * 110.48574 * 24.09118 * 4 2 1 35 35 H 1.09004 * 110.87374 * 203.90263 * 5 4 2 36 36 H 1.08995 * 110.70382 * 80.48570 * 5 4 2 37 37 H 1.09001 * 109.46764 * 308.24640 * 8 6 5 38 38 H 1.09000 * 109.47284 * 188.24608 * 8 6 5 39 39 H 1.08997 * 109.62724 * 248.51772 * 12 11 9 40 40 H 1.08990 * 109.62897 * 9.10434 * 12 11 9 41 41 H 1.09007 * 109.64453 * 294.07666 * 13 12 11 42 42 H 1.08996 * 109.44233 * 173.96006 * 13 12 11 43 43 H 1.09001 * 109.46725 * 179.56017 * 15 14 13 44 44 H 1.08998 * 109.46944 * 299.55506 * 15 14 13 45 45 H 0.96997 * 119.99816 * 0.02562 * 18 16 15 46 46 H 0.97004 * 120.00343 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.49725 * 303.14238 * 27 14 13 48 48 H 1.09006 * 109.49606 * 183.06367 * 27 14 13 49 49 H 1.09007 * 109.62991 * 350.90530 * 28 11 9 50 50 H 1.09006 * 109.62901 * 111.28203 * 28 11 9 51 51 H 1.08995 * 110.03156 * 121.42724 * 29 2 1 52 52 H 1.08997 * 110.07050 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 1.2367 5 6 3.3138 -1.5043 0.7197 6 6 2.8876 -1.9403 -0.7041 7 1 2.2780 -2.8428 -0.6603 8 6 4.1176 -2.1688 -1.5850 9 6 4.8692 -3.3792 -1.0939 10 8 4.4610 -3.9983 -0.1343 11 7 5.9950 -3.7735 -1.7212 12 6 6.5040 -3.0406 -2.8904 13 6 7.9871 -2.7173 -2.6483 14 7 8.7078 -3.9574 -2.3312 15 6 10.1563 -3.7220 -2.2648 16 6 10.4503 -2.6962 -1.2007 17 8 9.5564 -2.2841 -0.4921 18 7 11.7067 -2.2367 -1.0364 19 6 11.9743 -1.3039 -0.0681 20 1 11.1784 -0.9376 0.5634 21 6 13.2696 -0.8306 0.1016 22 7 14.2382 -1.2775 -0.6657 23 14 13.6341 0.4410 1.4206 24 1 13.9851 -0.2477 2.6886 25 1 14.7720 1.2911 0.9876 26 1 12.4348 1.2904 1.6342 27 6 8.2141 -4.5566 -1.0843 28 6 6.7441 -4.9515 -1.2581 29 6 2.0572 -0.7530 -1.2340 30 1 -0.3632 -1.0274 0.0250 31 1 -0.3634 0.5353 0.8772 32 1 -0.3633 0.4919 -0.9023 33 1 2.3296 -0.0543 2.0255 34 1 1.3134 -1.4649 1.5975 35 1 3.5312 -2.3732 1.3408 36 1 4.1721 -0.8337 0.6776 37 1 4.7663 -1.2941 -1.5370 38 1 3.8015 -2.3307 -2.6155 39 1 6.4018 -3.6582 -3.7827 40 1 5.9419 -2.1153 -3.0157 41 1 8.0789 -2.0200 -1.8155 42 1 8.4120 -2.2691 -3.5465 43 1 10.6651 -4.6546 -2.0209 44 1 10.5097 -3.3569 -3.2291 45 1 12.4215 -2.5660 -1.6034 46 1 15.1425 -0.9468 -0.5476 47 1 8.3029 -3.8339 -0.2732 48 1 8.8034 -5.4428 -0.8483 49 1 6.3406 -5.2901 -0.3038 50 1 6.6616 -5.7507 -1.9947 51 1 2.6867 -0.0946 -1.8324 52 1 1.2235 -1.1184 -1.8336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113209685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:02 Heat of formation + Delta-G solvation = -81.854174 kcal Electronic energy + Delta-G solvation = -30201.478617 eV Core-core repulsion = 26199.997036 eV Total energy + Delta-G solvation = -4001.481581 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.31723 -39.16115 -38.27447 -36.88839 -34.48079 -33.65691 -32.82857 -31.38348 -30.98448 -29.76778 -28.78428 -27.23321 -25.60331 -24.44645 -23.78791 -23.29513 -21.24068 -20.35584 -19.61245 -19.38256 -18.73111 -17.90195 -17.03138 -16.24084 -16.08644 -15.61620 -15.27030 -14.99053 -14.88092 -14.74836 -14.54953 -14.09481 -13.93946 -13.75757 -13.58651 -13.45980 -13.22382 -13.18929 -12.85188 -12.44262 -12.23414 -11.91213 -11.80189 -11.55794 -11.47443 -11.24549 -11.14413 -11.03194 -10.91530 -10.84797 -10.81173 -10.73666 -10.67696 -10.63454 -10.47569 -10.45968 -10.30887 -9.56280 -9.53818 -9.31119 -8.55379 -8.05868 -7.49255 -6.50900 -3.92387 2.75999 3.08421 3.10610 3.20763 3.26140 3.76066 4.10076 4.24161 4.36125 4.45056 4.55699 4.70547 4.91720 4.97394 5.05732 5.08997 5.13013 5.23504 5.27282 5.35562 5.36598 5.37756 5.45646 5.49336 5.50704 5.55197 5.62256 5.67873 5.70226 5.77496 5.82739 5.83789 5.89793 5.93327 5.96811 5.97533 6.03647 6.04817 6.16118 6.26694 6.31893 6.41557 6.46594 6.59639 6.66483 7.18807 7.32379 7.45959 7.55779 7.95211 8.30426 8.49688 9.07453 9.43071 9.93435 10.65487 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.002613 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.958942 B =10712.502024 C =12295.172425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.121 4.121 5 C -0.118 4.118 6 C -0.074 4.074 7 H 0.080 0.920 8 C -0.134 4.134 9 C 0.516 3.484 10 O -0.545 6.545 11 N -0.609 5.609 12 C 0.115 3.885 13 C 0.022 3.978 14 N -0.513 5.513 15 C 0.042 3.958 16 C 0.404 3.596 17 O -0.594 6.594 18 N -0.555 5.555 19 C -0.303 4.303 20 H 0.102 0.898 21 C 0.025 3.975 22 N -0.897 5.897 23 Si 0.929 3.071 24 H -0.277 1.277 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.025 3.975 28 C 0.121 3.879 29 C -0.117 4.117 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.077 0.923 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.076 0.924 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.393 0.607 46 H 0.273 0.727 47 H 0.081 0.919 48 H 0.075 0.925 49 H 0.090 0.910 50 H 0.065 0.935 51 H 0.064 0.936 52 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.558 -1.675 -5.994 20.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.088 0.912 4 C -0.158 4.158 5 C -0.156 4.156 6 C -0.093 4.093 7 H 0.098 0.902 8 C -0.174 4.174 9 C 0.305 3.695 10 O -0.423 6.423 11 N -0.343 5.343 12 C -0.008 4.008 13 C -0.106 4.106 14 N -0.236 5.236 15 C -0.090 4.090 16 C 0.189 3.811 17 O -0.481 6.481 18 N -0.190 5.190 19 C -0.433 4.433 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.203 1.203 25 H -0.208 1.208 26 H -0.194 1.194 27 C -0.104 4.104 28 C -0.002 4.002 29 C -0.155 4.155 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.096 0.904 36 H 0.082 0.918 37 H 0.112 0.888 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.094 0.906 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.226 0.774 46 H 0.083 0.917 47 H 0.099 0.901 48 H 0.093 0.907 49 H 0.108 0.892 50 H 0.084 0.916 51 H 0.083 0.917 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.250 -2.013 -5.407 21.056 hybrid contribution 1.226 1.049 0.746 1.778 sum -19.024 -0.963 -4.661 19.610 Atomic orbital electron populations 1.21889 0.95285 1.01668 1.01307 1.21738 0.95407 0.99391 0.95095 0.91213 1.22470 0.97676 0.98780 0.96918 1.22583 0.96994 1.00113 0.95861 1.21725 0.94578 0.98296 0.94679 0.90192 1.21788 0.97599 0.97038 1.00933 1.20646 0.80389 0.85725 0.82755 1.90646 1.67542 1.56768 1.27355 1.48152 1.25104 1.29911 1.31126 1.21942 0.94748 0.96315 0.87789 1.22765 0.92292 0.92965 1.02627 1.62446 1.02469 1.25607 1.33093 1.22052 0.89319 0.98870 0.98752 1.21083 0.83933 0.87380 0.88667 1.90425 1.44804 1.63023 1.49856 1.42056 1.07828 1.37027 1.32070 1.19702 0.94672 1.17041 1.11839 0.88004 1.25289 0.95241 0.98781 0.98457 1.69606 1.01450 1.43813 1.38930 0.85867 0.78178 0.80067 0.80256 1.20321 1.20812 1.19409 1.22670 0.94002 1.00389 0.93329 1.21656 0.90880 0.86952 1.00688 1.22309 0.99174 0.96707 0.97293 0.92652 0.92921 0.92921 0.91973 0.91708 0.90384 0.91843 0.88789 0.89205 0.91111 0.89861 0.90090 0.90580 0.89194 0.89272 0.77362 0.91716 0.90103 0.90669 0.89214 0.91632 0.91714 0.91758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.07 8.85 37.16 0.33 -0.74 16 2 C -0.10 -0.84 3.50 -89.50 -0.31 -1.16 16 3 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -1.19 6.36 -24.99 -0.16 -1.35 16 5 C -0.12 -1.40 5.70 -24.66 -0.14 -1.54 16 6 C -0.07 -0.79 2.45 -88.96 -0.22 -1.00 16 7 H 0.08 0.94 7.96 -51.93 -0.41 0.52 16 8 C -0.13 -1.43 3.42 -27.88 -0.10 -1.52 16 9 C 0.52 7.39 7.51 -10.98 -0.08 7.31 16 10 O -0.55 -9.44 14.06 5.56 0.08 -9.36 16 11 N -0.61 -8.50 3.00 -172.20 -0.52 -9.02 16 12 C 0.12 1.37 6.53 -3.36 -0.02 1.35 16 13 C 0.02 0.33 5.14 -3.46 -0.02 0.31 16 14 N -0.51 -8.01 4.83 -235.49 -1.14 -9.15 16 15 C 0.04 0.70 5.84 -4.98 -0.03 0.67 16 16 C 0.40 8.92 7.18 -10.99 -0.08 8.84 16 17 O -0.59 -14.83 11.25 5.55 0.06 -14.76 16 18 N -0.55 -13.49 5.29 -10.97 -0.06 -13.55 16 19 C -0.30 -8.21 9.68 -14.94 -0.14 -8.35 16 20 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 21 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 22 N -0.90 -23.86 13.05 55.50 0.72 -23.14 16 23 Si 0.93 20.71 29.55 -169.99 -5.02 15.69 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.02 0.40 5.20 -3.73 -0.02 0.38 16 28 C 0.12 1.74 6.59 -3.62 -0.02 1.71 16 29 C -0.12 -1.01 6.03 -25.61 -0.15 -1.16 16 30 H 0.05 0.41 8.12 -51.93 -0.42 -0.01 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.63 7.83 -51.93 -0.41 0.22 16 35 H 0.08 1.10 7.17 -51.93 -0.37 0.73 16 36 H 0.06 0.79 8.00 -51.93 -0.42 0.38 16 37 H 0.09 0.98 7.59 -51.93 -0.39 0.58 16 38 H 0.09 0.76 7.99 -51.93 -0.41 0.34 16 39 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.08 0.80 6.02 -51.93 -0.31 0.49 16 41 H 0.08 1.54 5.72 -51.93 -0.30 1.25 16 42 H 0.08 1.04 8.11 -51.93 -0.42 0.62 16 43 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 44 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 45 H 0.39 9.18 7.90 -40.82 -0.32 8.86 16 46 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 47 H 0.08 1.65 5.74 -51.93 -0.30 1.35 16 48 H 0.07 1.13 8.06 -51.93 -0.42 0.71 16 49 H 0.09 1.37 7.06 -51.92 -0.37 1.00 16 50 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 51 H 0.06 0.52 7.84 -51.93 -0.41 0.11 16 52 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 LS Contribution 397.15 15.07 5.99 5.99 Total: -1.00 -30.84 397.15 -10.12 -40.96 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -8.97 Total: 12.06 kcal Atomic # 6 Polarization: 5.55 SS G_CDS: -1.27 Total: 4.29 kcal Atomic # 7 Polarization: -53.87 SS G_CDS: -0.99 Total: -54.86 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.14 Total: -24.12 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.02 Total: 15.69 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -30.84 -10.12 -40.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113209685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.893 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds