Wall clock time and date at job start Tue Mar 31 2020 21:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 110.01424 * 2 1 4 4 C 1.54270 * 110.03115 * 121.43433 * 2 1 3 5 5 C 1.55028 * 104.27571 * 142.80867 * 4 2 1 6 6 C 1.54886 * 102.68530 * 322.23191 * 5 4 2 7 7 H 1.09001 * 110.48939 * 279.02751 * 6 5 4 8 8 C 1.53005 * 110.48892 * 156.52007 * 6 5 4 9 9 C 1.50701 * 109.46906 * 68.24279 * 8 6 5 10 10 O 1.21273 * 120.00146 * 0.02562 * 9 8 6 11 11 N 1.34781 * 119.99433 * 180.02562 * 9 8 6 12 12 C 1.47077 * 120.88361 * 359.72042 * 11 9 8 13 13 C 1.53704 * 108.27340 * 128.75696 * 12 11 9 14 14 N 1.46900 * 109.25819 * 54.08003 * 13 12 11 15 15 C 1.46899 * 110.99671 * 172.60917 * 14 13 12 16 16 C 1.50693 * 109.47267 * 59.56022 * 15 14 13 17 17 O 1.21290 * 120.00306 * 5.59757 * 16 15 14 18 18 N 1.34782 * 120.00022 * 185.59470 * 16 15 14 19 19 C 1.37097 * 120.00300 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99674 * 0.02562 * 19 18 16 21 21 C 1.38946 * 120.00140 * 179.97438 * 19 18 16 22 22 N 1.31408 * 120.00059 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00120 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47223 * 89.99716 * 23 21 19 25 25 H 1.48495 * 109.47217 * 210.00156 * 23 21 19 26 26 H 1.48508 * 109.46767 * 330.00012 * 23 21 19 27 27 C 1.46894 * 111.26917 * 296.75699 * 14 13 12 28 28 C 1.47080 * 120.87764 * 179.97438 * 11 9 8 29 29 C 1.53875 * 110.03521 * 238.60723 * 2 1 3 30 30 H 1.09004 * 109.46508 * 181.39557 * 1 2 3 31 31 H 1.08999 * 109.47275 * 301.39304 * 1 2 3 32 32 H 1.09000 * 109.47108 * 61.40218 * 1 2 3 33 33 H 1.08997 * 110.48609 * 261.57643 * 4 2 1 34 34 H 1.08992 * 110.48574 * 24.09118 * 4 2 1 35 35 H 1.09004 * 110.87374 * 203.90263 * 5 4 2 36 36 H 1.08995 * 110.70382 * 80.48570 * 5 4 2 37 37 H 1.09001 * 109.46764 * 308.24640 * 8 6 5 38 38 H 1.09000 * 109.47284 * 188.24608 * 8 6 5 39 39 H 1.08997 * 109.62724 * 248.51772 * 12 11 9 40 40 H 1.08990 * 109.62897 * 9.10434 * 12 11 9 41 41 H 1.09007 * 109.64453 * 294.07666 * 13 12 11 42 42 H 1.08996 * 109.44233 * 173.96006 * 13 12 11 43 43 H 1.09001 * 109.46725 * 179.56017 * 15 14 13 44 44 H 1.08998 * 109.46944 * 299.55506 * 15 14 13 45 45 H 0.96997 * 119.99816 * 0.02562 * 18 16 15 46 46 H 0.97004 * 120.00343 * 179.97438 * 22 21 19 47 47 H 1.09000 * 109.49725 * 303.14238 * 27 14 13 48 48 H 1.09006 * 109.49606 * 183.06367 * 27 14 13 49 49 H 1.09007 * 109.62991 * 350.90530 * 28 11 9 50 50 H 1.09006 * 109.62901 * 111.28203 * 28 11 9 51 51 H 1.08995 * 110.03156 * 121.42724 * 29 2 1 52 52 H 1.08997 * 110.07050 * 0.02562 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0584 -0.7559 1.2367 5 6 3.3138 -1.5043 0.7197 6 6 2.8876 -1.9403 -0.7041 7 1 2.2780 -2.8428 -0.6603 8 6 4.1176 -2.1688 -1.5850 9 6 4.8692 -3.3792 -1.0939 10 8 4.4610 -3.9983 -0.1343 11 7 5.9950 -3.7735 -1.7212 12 6 6.5040 -3.0406 -2.8904 13 6 7.9871 -2.7173 -2.6483 14 7 8.7078 -3.9574 -2.3312 15 6 10.1563 -3.7220 -2.2648 16 6 10.4503 -2.6962 -1.2007 17 8 9.5564 -2.2841 -0.4921 18 7 11.7067 -2.2367 -1.0364 19 6 11.9743 -1.3039 -0.0681 20 1 11.1784 -0.9376 0.5634 21 6 13.2696 -0.8306 0.1016 22 7 14.2382 -1.2775 -0.6657 23 14 13.6341 0.4410 1.4206 24 1 13.9851 -0.2477 2.6886 25 1 14.7720 1.2911 0.9876 26 1 12.4348 1.2904 1.6342 27 6 8.2141 -4.5566 -1.0843 28 6 6.7441 -4.9515 -1.2581 29 6 2.0572 -0.7530 -1.2340 30 1 -0.3632 -1.0274 0.0250 31 1 -0.3634 0.5353 0.8772 32 1 -0.3633 0.4919 -0.9023 33 1 2.3296 -0.0543 2.0255 34 1 1.3134 -1.4649 1.5975 35 1 3.5312 -2.3732 1.3408 36 1 4.1721 -0.8337 0.6776 37 1 4.7663 -1.2941 -1.5370 38 1 3.8015 -2.3307 -2.6155 39 1 6.4018 -3.6582 -3.7827 40 1 5.9419 -2.1153 -3.0157 41 1 8.0789 -2.0200 -1.8155 42 1 8.4120 -2.2691 -3.5465 43 1 10.6651 -4.6546 -2.0209 44 1 10.5097 -3.3569 -3.2291 45 1 12.4215 -2.5660 -1.6034 46 1 15.1425 -0.9468 -0.5476 47 1 8.3029 -3.8339 -0.2732 48 1 8.8034 -5.4428 -0.8483 49 1 6.3406 -5.2901 -0.3038 50 1 6.6616 -5.7507 -1.9947 51 1 2.6867 -0.0946 -1.8324 52 1 1.2235 -1.1184 -1.8336 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113209685.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:01 Heat of formation + Delta-G solvation = -102.111295 kcal Electronic energy + Delta-G solvation = -30202.357032 eV Core-core repulsion = 26199.997036 eV Total energy + Delta-G solvation = -4002.359996 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.48974 -40.58298 -39.30989 -38.26021 -36.13431 -35.21449 -33.68861 -33.33380 -32.10377 -30.68078 -30.03688 -28.17168 -27.16186 -25.54260 -25.08971 -24.42915 -22.42632 -21.36535 -21.07143 -20.32575 -20.08065 -19.62686 -18.16896 -17.78020 -17.29963 -16.63839 -16.60419 -16.34535 -16.12385 -16.01038 -15.83791 -15.59292 -15.36266 -15.30293 -14.67216 -14.45704 -14.25700 -14.05919 -13.80309 -13.61090 -13.47980 -13.25497 -13.07951 -12.99348 -12.79129 -12.61896 -12.47506 -12.25193 -12.14942 -12.12030 -12.04876 -11.92729 -11.66963 -11.60206 -11.55274 -11.49817 -11.40804 -11.20984 -11.00337 -10.68085 -10.02096 -9.73355 -9.02742 -8.49273 -5.98970 1.32814 1.37833 1.49584 1.65463 1.99127 2.03184 2.25856 2.95974 3.16830 3.24150 3.47338 3.64838 3.75694 3.83382 4.00411 4.04428 4.20210 4.21512 4.31197 4.34605 4.37230 4.45597 4.55166 4.58118 4.59848 4.61843 4.62579 4.69229 4.71251 4.74826 4.76591 4.78220 4.86735 4.91089 5.04512 5.09259 5.12114 5.17089 5.21589 5.27867 5.34714 5.38191 5.38708 5.50243 5.53907 5.60386 5.81476 5.98908 6.01486 6.46774 6.56021 7.09056 7.19939 7.52592 8.07990 8.65924 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012145 B = 0.002613 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2304.958942 B =10712.502024 C =12295.172425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.097 4.097 3 H 0.073 0.927 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.071 4.071 7 H 0.067 0.933 8 C -0.127 4.127 9 C 0.507 3.493 10 O -0.584 6.584 11 N -0.615 5.615 12 C 0.120 3.880 13 C 0.020 3.980 14 N -0.497 5.497 15 C 0.050 3.950 16 C 0.406 3.594 17 O -0.624 6.624 18 N -0.569 5.569 19 C -0.332 4.332 20 H 0.074 0.926 21 C -0.010 4.010 22 N -0.916 5.916 23 Si 0.988 3.012 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.275 1.275 27 C 0.030 3.970 28 C 0.126 3.874 29 C -0.110 4.110 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.045 0.955 36 H 0.051 0.949 37 H 0.100 0.900 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.109 0.891 41 H 0.036 0.964 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.117 0.883 45 H 0.397 0.603 46 H 0.278 0.722 47 H 0.033 0.967 48 H 0.086 0.914 49 H 0.073 0.927 50 H 0.090 0.910 51 H 0.076 0.924 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.537 -1.300 -8.390 22.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.116 4.116 3 H 0.091 0.909 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.090 4.090 7 H 0.086 0.914 8 C -0.167 4.167 9 C 0.297 3.703 10 O -0.465 6.465 11 N -0.348 5.348 12 C -0.002 4.002 13 C -0.108 4.108 14 N -0.220 5.220 15 C -0.081 4.081 16 C 0.193 3.807 17 O -0.512 6.512 18 N -0.205 5.205 19 C -0.462 4.462 20 H 0.092 0.908 21 C -0.211 4.211 22 N -0.557 5.557 23 Si 0.812 3.188 24 H -0.199 1.199 25 H -0.193 1.193 26 H -0.200 1.200 27 C -0.099 4.099 28 C 0.003 3.997 29 C -0.148 4.148 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.142 0.858 39 H 0.117 0.883 40 H 0.128 0.872 41 H 0.054 0.946 42 H 0.113 0.887 43 H 0.128 0.872 44 H 0.134 0.866 45 H 0.231 0.769 46 H 0.088 0.912 47 H 0.051 0.949 48 H 0.104 0.896 49 H 0.091 0.909 50 H 0.108 0.892 51 H 0.095 0.905 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.226 -1.643 -7.835 22.686 hybrid contribution 1.494 0.876 1.522 2.306 sum -19.732 -0.767 -6.313 20.731 Atomic orbital electron populations 1.21866 0.94143 1.01800 1.02079 1.21749 0.96365 0.99254 0.94216 0.90857 1.22462 0.96658 0.98732 0.97804 1.22535 0.97655 0.98859 0.96909 1.21687 0.94765 0.98764 0.93793 0.91419 1.21839 0.97099 0.95205 1.02517 1.21370 0.80499 0.86304 0.82139 1.90632 1.68657 1.58185 1.29015 1.48330 1.24960 1.29822 1.31664 1.22108 0.92552 0.97924 0.87638 1.22805 0.94748 0.91728 1.01564 1.62558 1.01809 1.25638 1.31964 1.22170 0.90350 0.97817 0.97785 1.22210 0.82687 0.87059 0.88746 1.90447 1.45615 1.63954 1.51170 1.42121 1.08778 1.37441 1.32202 1.19582 0.94619 1.18898 1.13130 0.90780 1.25984 0.94686 1.00207 1.00192 1.69657 1.01732 1.44540 1.39771 0.85002 0.77962 0.77888 0.77942 1.19887 1.19313 1.19976 1.22564 0.95751 0.99501 0.92055 1.21550 0.89439 0.87943 1.00783 1.22283 0.99396 0.95734 0.97356 0.92812 0.92662 0.91711 0.91974 0.91733 0.93578 0.93000 0.88229 0.85830 0.88339 0.87244 0.94609 0.88680 0.87188 0.86553 0.76933 0.91238 0.94918 0.89567 0.90892 0.89196 0.90521 0.90295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 8.85 71.98 0.64 -1.18 16 2 C -0.10 -1.53 3.50 -10.07 -0.04 -1.56 16 3 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 4 C -0.12 -2.35 6.36 31.72 0.20 -2.15 16 5 C -0.12 -3.03 5.70 31.93 0.18 -2.85 16 6 C -0.07 -1.46 2.45 -9.72 -0.02 -1.48 16 7 H 0.07 1.57 7.96 -2.39 -0.02 1.55 16 8 C -0.13 -2.50 3.42 29.85 0.10 -2.40 16 9 C 0.51 14.37 7.51 87.66 0.66 15.03 16 10 O -0.58 -20.99 14.06 -3.01 -0.04 -21.04 16 11 N -0.61 -16.51 3.00 -817.12 -2.45 -18.96 16 12 C 0.12 2.52 6.53 86.51 0.57 3.08 16 13 C 0.02 0.58 5.14 86.54 0.44 1.02 16 14 N -0.50 -14.74 4.83 -898.97 -4.34 -19.08 16 15 C 0.05 1.61 5.84 85.55 0.50 2.11 16 16 C 0.41 18.20 7.18 87.65 0.63 18.83 16 17 O -0.62 -32.45 11.25 -3.06 -0.03 -32.49 16 18 N -0.57 -28.22 5.29 -306.99 -1.62 -29.84 16 19 C -0.33 -18.57 9.68 84.04 0.81 -17.76 16 20 H 0.07 4.47 7.16 -2.91 -0.02 4.45 16 21 C -0.01 -0.55 5.50 84.93 0.47 -0.08 16 22 N -0.92 -48.69 13.05 21.66 0.28 -48.41 16 23 Si 0.99 42.77 29.55 68.60 2.03 44.79 16 24 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 25 H -0.27 -10.94 7.11 99.48 0.71 -10.24 16 26 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 27 C 0.03 0.98 5.20 86.37 0.45 1.43 16 28 C 0.13 3.56 6.59 86.33 0.57 4.13 16 29 C -0.11 -1.64 6.03 31.32 0.19 -1.45 16 30 H 0.05 0.71 8.12 -2.38 -0.02 0.69 16 31 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.06 1.26 7.83 -2.39 -0.02 1.24 16 35 H 0.05 1.42 7.17 -2.38 -0.02 1.40 16 36 H 0.05 1.37 8.00 -2.39 -0.02 1.35 16 37 H 0.10 1.89 7.59 -2.39 -0.02 1.87 16 38 H 0.12 1.62 7.99 -2.39 -0.02 1.60 16 39 H 0.10 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.11 1.73 6.02 -2.39 -0.01 1.72 16 41 H 0.04 1.38 5.72 -2.38 -0.01 1.37 16 42 H 0.09 2.34 8.11 -2.39 -0.02 2.32 16 43 H 0.11 3.13 8.07 -2.39 -0.02 3.11 16 44 H 0.12 3.16 8.14 -2.39 -0.02 3.14 16 45 H 0.40 18.70 7.90 -92.71 -0.73 17.96 16 46 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 47 H 0.03 1.40 5.74 -2.39 -0.01 1.38 16 48 H 0.09 2.54 8.06 -2.38 -0.02 2.52 16 49 H 0.07 2.31 7.06 -2.38 -0.02 2.29 16 50 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 51 H 0.08 0.98 7.84 -2.39 -0.02 0.97 16 52 H 0.08 0.98 7.67 -2.39 -0.02 0.96 16 Total: -1.00 -70.80 397.15 0.34 -70.46 By element: Atomic # 1 Polarization: 39.69 SS G_CDS: 0.18 Total: 39.86 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 6.35 Total: 14.70 kcal Atomic # 7 Polarization: -108.16 SS G_CDS: -8.13 Total: -116.30 kcal Atomic # 8 Polarization: -53.45 SS G_CDS: -0.08 Total: -53.52 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -70.80 0.34 -70.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113209685.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.654 kcal (2) G-P(sol) polarization free energy of solvation -70.799 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.458 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds