Wall clock time and date at job start Tue Mar 31 2020 21:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.01232 * 2 1 4 4 C 1.53870 * 110.03194 * 121.38757 * 2 1 3 5 5 C 1.54270 * 106.59537 * 119.28887 * 4 2 1 6 6 C 1.54883 * 104.19657 * 23.61052 * 5 4 2 7 7 H 1.08998 * 110.75958 * 80.37265 * 6 5 4 8 8 C 1.53003 * 110.75677 * 203.74590 * 6 5 4 9 9 C 1.50705 * 109.46875 * 293.54327 * 8 6 5 10 10 O 1.21287 * 119.99991 * 359.97438 * 9 8 6 11 11 N 1.34772 * 119.99909 * 179.97438 * 9 8 6 12 12 C 1.47073 * 120.88365 * 359.72629 * 11 9 8 13 13 C 1.53693 * 108.28020 * 128.75433 * 12 11 9 14 14 N 1.46891 * 109.26110 * 54.08023 * 13 12 11 15 15 C 1.46894 * 111.00701 * 172.60928 * 14 13 12 16 16 C 1.50699 * 109.46844 * 59.55674 * 15 14 13 17 17 O 1.21287 * 120.00186 * 5.60319 * 16 15 14 18 18 N 1.34774 * 119.99900 * 185.59668 * 16 15 14 19 19 C 1.37105 * 119.99913 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00173 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99733 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99775 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00235 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47637 * 89.99852 * 23 21 19 25 25 H 1.48501 * 109.47261 * 210.00177 * 23 21 19 26 26 H 1.48498 * 109.47312 * 329.99897 * 23 21 19 27 27 C 1.46902 * 111.26915 * 296.76462 * 14 13 12 28 28 C 1.47078 * 120.88024 * 179.97438 * 11 9 8 29 29 C 1.54266 * 110.03519 * 238.56086 * 2 1 3 30 30 H 1.09000 * 109.47071 * 300.06207 * 1 2 3 31 31 H 1.09000 * 109.46493 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47028 * 60.06242 * 1 2 3 33 33 H 1.08998 * 110.03631 * 238.57103 * 4 2 1 34 34 H 1.09000 * 110.03615 * 359.95462 * 4 2 1 35 35 H 1.09000 * 110.48599 * 142.28956 * 5 4 2 36 36 H 1.08996 * 110.48572 * 264.92785 * 5 4 2 37 37 H 1.08990 * 109.47387 * 53.54086 * 8 6 5 38 38 H 1.08996 * 109.47416 * 173.54848 * 8 6 5 39 39 H 1.09004 * 109.63094 * 248.52013 * 12 11 9 40 40 H 1.09001 * 109.62939 * 9.10129 * 12 11 9 41 41 H 1.09007 * 109.64771 * 294.07768 * 13 12 11 42 42 H 1.09001 * 109.44683 * 173.96403 * 13 12 11 43 43 H 1.08995 * 109.47558 * 179.56219 * 15 14 13 44 44 H 1.08998 * 109.47195 * 299.56193 * 15 14 13 45 45 H 0.97000 * 120.00163 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99655 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.49058 * 303.13548 * 27 14 13 48 48 H 1.09007 * 109.51603 * 183.07783 * 27 14 13 49 49 H 1.08999 * 109.63142 * 350.90249 * 28 11 9 50 50 H 1.09011 * 109.62705 * 111.47572 * 28 11 9 51 51 H 1.09005 * 110.48347 * 335.78197 * 29 2 1 52 52 H 1.08993 * 110.48560 * 98.42108 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7529 1.2341 5 6 2.8876 -1.9402 0.7044 6 6 3.3138 -1.5009 -0.7184 7 1 4.1710 -0.8292 -0.6747 8 6 3.6210 -2.7185 -1.5926 9 6 4.8420 -3.4236 -1.0605 10 8 5.4108 -2.9942 -0.0791 11 7 5.3019 -4.5312 -1.6753 12 6 4.6239 -5.0721 -2.8631 13 6 5.6745 -5.2789 -3.9656 14 7 6.7679 -6.1093 -3.4434 15 6 7.7062 -6.4774 -4.5120 16 6 8.2861 -5.2281 -5.1236 17 8 8.0301 -4.1435 -4.6450 18 7 9.0892 -5.3162 -6.2023 19 6 9.6173 -4.1796 -6.7584 20 1 9.3899 -3.2139 -6.3318 21 6 10.4449 -4.2704 -7.8708 22 7 10.9514 -3.1811 -8.4035 23 14 10.8376 -5.9407 -8.6090 24 1 9.8260 -6.2750 -9.6436 25 1 12.1863 -5.9031 -9.2294 26 1 10.8127 -6.9722 -7.5410 27 6 7.4655 -5.4384 -2.3382 28 6 6.4921 -5.2343 -1.1730 29 6 2.0585 -0.7559 -1.2365 30 1 -0.3633 0.5148 0.8894 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5128 -0.8905 33 1 2.6867 -0.0945 1.8325 34 1 1.2230 -1.1176 1.8334 35 1 3.7638 -2.1030 1.3319 36 1 2.2773 -2.8422 0.6584 37 1 2.7714 -3.4010 -1.5764 38 1 3.8064 -2.3933 -2.6162 39 1 4.1560 -6.0250 -2.6156 40 1 3.8663 -4.3669 -3.2051 41 1 6.0699 -4.3133 -4.2809 42 1 5.2131 -5.7786 -4.8174 43 1 8.5097 -7.0854 -4.0965 44 1 7.1793 -7.0461 -5.2781 45 1 9.2938 -6.1836 -6.5852 46 1 11.5289 -3.2445 -9.1803 47 1 7.8359 -4.4706 -2.6762 48 1 8.3030 -6.0537 -2.0093 49 1 6.9703 -4.6366 -0.3970 50 1 6.2007 -6.2026 -0.7657 51 1 1.3143 -1.4667 -1.5960 52 1 2.3297 -0.0544 -2.0254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113209687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:14 Heat of formation + Delta-G solvation = -74.602349 kcal Electronic energy + Delta-G solvation = -30080.785731 eV Core-core repulsion = 26079.618612 eV Total energy + Delta-G solvation = -4001.167119 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35580 -39.27228 -38.34649 -36.98625 -34.54042 -33.72553 -32.85571 -31.80203 -31.03648 -29.78281 -28.91840 -27.35391 -25.69025 -24.46142 -23.69593 -23.33240 -21.24158 -20.17442 -19.86837 -19.53245 -18.83499 -18.15444 -17.02743 -16.37458 -16.10382 -15.80213 -15.45696 -15.10083 -14.99288 -14.59588 -14.41290 -14.28656 -14.03884 -13.89723 -13.65184 -13.35448 -13.20742 -13.02825 -12.93575 -12.41859 -12.41475 -12.23141 -12.00106 -11.76402 -11.60713 -11.37892 -11.17242 -11.11239 -11.01002 -10.89809 -10.83280 -10.77687 -10.69782 -10.66950 -10.65978 -10.51759 -10.09044 -9.60264 -9.56842 -9.41513 -8.59245 -8.27098 -7.59283 -6.40892 -3.92460 2.74457 2.95860 3.00145 3.05322 3.09207 3.57998 4.01756 4.14659 4.33489 4.41357 4.51201 4.57882 4.71889 4.95241 5.02255 5.07869 5.09860 5.19275 5.21888 5.27162 5.31443 5.38128 5.41830 5.44666 5.46110 5.53999 5.55248 5.59297 5.64854 5.74820 5.75930 5.77951 5.80790 5.83094 5.84401 5.90533 5.95511 5.99901 6.00502 6.19150 6.31002 6.36796 6.40132 6.53811 6.60557 7.08603 7.23140 7.46165 7.52834 8.04901 8.28687 8.47467 8.84469 9.31954 9.69805 10.71797 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.002266 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.072535 B =12352.750918 C =13131.826694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.098 4.098 3 H 0.069 0.931 4 C -0.121 4.121 5 C -0.115 4.115 6 C -0.076 4.076 7 H 0.083 0.917 8 C -0.133 4.133 9 C 0.517 3.483 10 O -0.544 6.544 11 N -0.610 5.610 12 C 0.116 3.884 13 C 0.021 3.979 14 N -0.513 5.513 15 C 0.039 3.961 16 C 0.412 3.588 17 O -0.576 6.576 18 N -0.582 5.582 19 C -0.308 4.308 20 H 0.119 0.881 21 C 0.042 3.958 22 N -0.877 5.877 23 Si 0.881 3.119 24 H -0.270 1.270 25 H -0.276 1.276 26 H -0.269 1.269 27 C 0.023 3.977 28 C 0.121 3.879 29 C -0.117 4.117 30 H 0.052 0.948 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.077 0.923 43 H 0.092 0.908 44 H 0.090 0.910 45 H 0.371 0.629 46 H 0.275 0.725 47 H 0.081 0.919 48 H 0.076 0.924 49 H 0.091 0.909 50 H 0.066 0.934 51 H 0.067 0.933 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.394 -3.886 13.006 22.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.117 4.117 3 H 0.088 0.912 4 C -0.159 4.159 5 C -0.153 4.153 6 C -0.095 4.095 7 H 0.101 0.899 8 C -0.172 4.172 9 C 0.305 3.695 10 O -0.422 6.422 11 N -0.344 5.344 12 C -0.008 4.008 13 C -0.108 4.108 14 N -0.236 5.236 15 C -0.093 4.093 16 C 0.199 3.801 17 O -0.461 6.461 18 N -0.220 5.220 19 C -0.437 4.437 20 H 0.136 0.864 21 C -0.161 4.161 22 N -0.516 5.516 23 Si 0.707 3.293 24 H -0.195 1.195 25 H -0.201 1.201 26 H -0.194 1.194 27 C -0.105 4.105 28 C -0.001 4.001 29 C -0.154 4.154 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.095 0.905 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.204 0.796 46 H 0.085 0.915 47 H 0.099 0.901 48 H 0.094 0.906 49 H 0.109 0.891 50 H 0.084 0.916 51 H 0.086 0.914 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.337 -3.255 13.873 23.223 hybrid contribution 0.918 -0.667 -1.355 1.767 sum -17.419 -3.922 12.518 21.806 Atomic orbital electron populations 1.21881 0.95220 1.01628 1.01369 1.21734 0.95433 0.99444 0.95044 0.91228 1.22234 0.99223 0.97338 0.97107 1.22397 0.99570 0.97070 0.96261 1.21870 0.97896 0.95294 0.94400 0.89855 1.21725 0.96339 0.97875 1.01301 1.20653 0.85716 0.79771 0.83332 1.90652 1.59660 1.65208 1.26655 1.48144 1.29368 1.27233 1.29628 1.21932 0.94805 0.99044 0.84979 1.22785 0.92127 0.99757 0.96098 1.62442 1.10305 1.42572 1.08250 1.22102 0.96442 0.96087 0.94645 1.21036 0.84213 0.91413 0.83487 1.90468 1.63089 1.29467 1.63070 1.42405 1.43651 1.08607 1.27330 1.19443 1.25885 0.87936 1.10469 0.86382 1.25093 0.96758 0.97582 0.96717 1.69627 1.32020 1.27367 1.22600 0.86653 0.79242 0.83441 0.79957 1.19532 1.20089 1.19398 1.22695 0.95742 1.01071 0.91011 1.21648 0.85569 0.96410 0.96515 1.22524 0.96856 0.98860 0.97193 0.92932 0.92688 0.92852 0.92062 0.92046 0.90454 0.92378 0.89136 0.88774 0.91101 0.89759 0.90034 0.90490 0.89023 0.89165 0.79579 0.91488 0.90066 0.90578 0.89105 0.91603 0.91430 0.91612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.84 37.16 0.33 -0.67 16 2 C -0.10 -0.81 3.50 -89.50 -0.31 -1.12 16 3 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 4 C -0.12 -1.08 6.46 -25.61 -0.17 -1.25 16 5 C -0.12 -1.21 5.59 -25.07 -0.14 -1.35 16 6 C -0.08 -0.80 2.49 -88.63 -0.22 -1.02 16 7 H 0.08 1.05 8.05 -51.93 -0.42 0.63 16 8 C -0.13 -1.40 3.57 -27.88 -0.10 -1.50 16 9 C 0.52 7.30 7.50 -10.98 -0.08 7.22 16 10 O -0.54 -9.34 13.99 5.55 0.08 -9.26 16 11 N -0.61 -8.31 3.00 -172.21 -0.52 -8.82 16 12 C 0.12 1.32 6.53 -3.37 -0.02 1.30 16 13 C 0.02 0.30 5.14 -3.47 -0.02 0.28 16 14 N -0.51 -7.61 4.83 -235.50 -1.14 -8.74 16 15 C 0.04 0.61 5.84 -4.98 -0.03 0.58 16 16 C 0.41 8.73 7.18 -10.99 -0.08 8.65 16 17 O -0.58 -14.22 11.25 5.55 0.06 -14.16 16 18 N -0.58 -13.25 5.09 -10.96 -0.06 -13.31 16 19 C -0.31 -8.48 10.16 -14.93 -0.15 -8.63 16 20 H 0.12 3.75 7.39 -52.49 -0.39 3.36 16 21 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 22 N -0.88 -25.18 13.96 55.50 0.77 -24.40 16 23 Si 0.88 18.86 27.74 -169.99 -4.71 14.15 16 24 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 25 H -0.28 -5.96 7.11 56.52 0.40 -5.55 16 26 H -0.27 -5.22 6.52 56.52 0.37 -4.85 16 27 C 0.02 0.36 5.20 -3.72 -0.02 0.34 16 28 C 0.12 1.69 6.59 -3.63 -0.02 1.67 16 29 C -0.12 -1.00 5.81 -25.07 -0.15 -1.15 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.50 7.67 -51.93 -0.40 0.10 16 35 H 0.08 0.98 7.06 -51.93 -0.37 0.61 16 36 H 0.06 0.57 8.01 -51.93 -0.42 0.16 16 37 H 0.09 0.76 7.94 -51.93 -0.41 0.35 16 38 H 0.09 0.95 7.67 -51.93 -0.40 0.55 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.08 0.78 6.02 -51.93 -0.31 0.47 16 41 H 0.08 1.51 5.72 -51.93 -0.30 1.22 16 42 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 43 H 0.09 1.27 8.07 -51.93 -0.42 0.85 16 44 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.37 7.43 5.76 -40.82 -0.24 7.19 16 46 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.08 1.62 5.75 -51.93 -0.30 1.32 16 48 H 0.08 1.08 8.06 -51.93 -0.42 0.67 16 49 H 0.09 1.36 7.06 -51.93 -0.37 0.99 16 50 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 51 H 0.07 0.52 7.76 -51.93 -0.40 0.12 16 52 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 394.16 15.07 5.94 5.94 Total: -1.00 -32.33 394.16 -9.79 -42.12 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: -8.94 Total: 12.10 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -1.28 Total: 4.39 kcal Atomic # 7 Polarization: -54.34 SS G_CDS: -0.94 Total: -55.28 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.14 Total: -23.42 kcal Atomic # 14 Polarization: 18.86 SS G_CDS: -4.71 Total: 14.15 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.33 -9.79 -42.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113209687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.482 kcal (2) G-P(sol) polarization free energy of solvation -32.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds