Wall clock time and date at job start Tue Mar 31 2020 21:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 110.01232 * 2 1 4 4 C 1.53870 * 110.03194 * 121.38757 * 2 1 3 5 5 C 1.54270 * 106.59537 * 119.28887 * 4 2 1 6 6 C 1.54883 * 104.19657 * 23.61052 * 5 4 2 7 7 H 1.08998 * 110.75958 * 80.37265 * 6 5 4 8 8 C 1.53003 * 110.75677 * 203.74590 * 6 5 4 9 9 C 1.50705 * 109.46875 * 293.54327 * 8 6 5 10 10 O 1.21287 * 119.99991 * 359.97438 * 9 8 6 11 11 N 1.34772 * 119.99909 * 179.97438 * 9 8 6 12 12 C 1.47073 * 120.88365 * 359.72629 * 11 9 8 13 13 C 1.53693 * 108.28020 * 128.75433 * 12 11 9 14 14 N 1.46891 * 109.26110 * 54.08023 * 13 12 11 15 15 C 1.46894 * 111.00701 * 172.60928 * 14 13 12 16 16 C 1.50699 * 109.46844 * 59.55674 * 15 14 13 17 17 O 1.21287 * 120.00186 * 5.60319 * 16 15 14 18 18 N 1.34774 * 119.99900 * 185.59668 * 16 15 14 19 19 C 1.37105 * 119.99913 * 180.02562 * 18 16 15 20 20 H 1.07991 * 120.00173 * 0.02562 * 19 18 16 21 21 C 1.38953 * 119.99733 * 180.02562 * 19 18 16 22 22 N 1.31413 * 119.99775 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00235 * 0.02562 * 21 19 18 24 24 H 1.48504 * 109.47637 * 89.99852 * 23 21 19 25 25 H 1.48501 * 109.47261 * 210.00177 * 23 21 19 26 26 H 1.48498 * 109.47312 * 329.99897 * 23 21 19 27 27 C 1.46902 * 111.26915 * 296.76462 * 14 13 12 28 28 C 1.47078 * 120.88024 * 179.97438 * 11 9 8 29 29 C 1.54266 * 110.03519 * 238.56086 * 2 1 3 30 30 H 1.09000 * 109.47071 * 300.06207 * 1 2 3 31 31 H 1.09000 * 109.46493 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47028 * 60.06242 * 1 2 3 33 33 H 1.08998 * 110.03631 * 238.57103 * 4 2 1 34 34 H 1.09000 * 110.03615 * 359.95462 * 4 2 1 35 35 H 1.09000 * 110.48599 * 142.28956 * 5 4 2 36 36 H 1.08996 * 110.48572 * 264.92785 * 5 4 2 37 37 H 1.08990 * 109.47387 * 53.54086 * 8 6 5 38 38 H 1.08996 * 109.47416 * 173.54848 * 8 6 5 39 39 H 1.09004 * 109.63094 * 248.52013 * 12 11 9 40 40 H 1.09001 * 109.62939 * 9.10129 * 12 11 9 41 41 H 1.09007 * 109.64771 * 294.07768 * 13 12 11 42 42 H 1.09001 * 109.44683 * 173.96403 * 13 12 11 43 43 H 1.08995 * 109.47558 * 179.56219 * 15 14 13 44 44 H 1.08998 * 109.47195 * 299.56193 * 15 14 13 45 45 H 0.97000 * 120.00163 * 0.02562 * 18 16 15 46 46 H 0.96999 * 119.99655 * 180.02562 * 22 21 19 47 47 H 1.08999 * 109.49058 * 303.13548 * 27 14 13 48 48 H 1.09007 * 109.51603 * 183.07783 * 27 14 13 49 49 H 1.08999 * 109.63142 * 350.90249 * 28 11 9 50 50 H 1.09011 * 109.62705 * 111.47572 * 28 11 9 51 51 H 1.09005 * 110.48347 * 335.78197 * 29 2 1 52 52 H 1.08993 * 110.48560 * 98.42108 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0571 -0.7529 1.2341 5 6 2.8876 -1.9402 0.7044 6 6 3.3138 -1.5009 -0.7184 7 1 4.1710 -0.8292 -0.6747 8 6 3.6210 -2.7185 -1.5926 9 6 4.8420 -3.4236 -1.0605 10 8 5.4108 -2.9942 -0.0791 11 7 5.3019 -4.5312 -1.6753 12 6 4.6239 -5.0721 -2.8631 13 6 5.6745 -5.2789 -3.9656 14 7 6.7679 -6.1093 -3.4434 15 6 7.7062 -6.4774 -4.5120 16 6 8.2861 -5.2281 -5.1236 17 8 8.0301 -4.1435 -4.6450 18 7 9.0892 -5.3162 -6.2023 19 6 9.6173 -4.1796 -6.7584 20 1 9.3899 -3.2139 -6.3318 21 6 10.4449 -4.2704 -7.8708 22 7 10.9514 -3.1811 -8.4035 23 14 10.8376 -5.9407 -8.6090 24 1 9.8260 -6.2750 -9.6436 25 1 12.1863 -5.9031 -9.2294 26 1 10.8127 -6.9722 -7.5410 27 6 7.4655 -5.4384 -2.3382 28 6 6.4921 -5.2343 -1.1730 29 6 2.0585 -0.7559 -1.2365 30 1 -0.3633 0.5148 0.8894 31 1 -0.3632 -1.0277 0.0005 32 1 -0.3633 0.5128 -0.8905 33 1 2.6867 -0.0945 1.8325 34 1 1.2230 -1.1176 1.8334 35 1 3.7638 -2.1030 1.3319 36 1 2.2773 -2.8422 0.6584 37 1 2.7714 -3.4010 -1.5764 38 1 3.8064 -2.3933 -2.6162 39 1 4.1560 -6.0250 -2.6156 40 1 3.8663 -4.3669 -3.2051 41 1 6.0699 -4.3133 -4.2809 42 1 5.2131 -5.7786 -4.8174 43 1 8.5097 -7.0854 -4.0965 44 1 7.1793 -7.0461 -5.2781 45 1 9.2938 -6.1836 -6.5852 46 1 11.5289 -3.2445 -9.1803 47 1 7.8359 -4.4706 -2.6762 48 1 8.3030 -6.0537 -2.0093 49 1 6.9703 -4.6366 -0.3970 50 1 6.2007 -6.2026 -0.7657 51 1 1.3143 -1.4667 -1.5960 52 1 2.3297 -0.0544 -2.0254 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113209687.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:15:11 Heat of formation + Delta-G solvation = -97.651158 kcal Electronic energy + Delta-G solvation = -30081.785202 eV Core-core repulsion = 26079.618612 eV Total energy + Delta-G solvation = -4002.166590 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.51 seconds Orbital eigenvalues (eV) -41.51637 -40.66474 -39.33289 -38.30175 -36.16560 -35.24904 -33.81339 -33.68115 -32.10803 -30.66140 -30.09244 -28.27362 -27.18305 -25.44877 -25.03140 -24.43572 -22.39338 -21.36988 -21.07546 -20.62951 -20.30892 -19.55102 -18.12991 -17.78291 -17.31097 -16.83771 -16.81797 -16.45456 -16.17898 -15.91690 -15.71559 -15.53669 -15.21546 -15.06414 -14.81260 -14.61405 -14.32618 -14.18311 -14.06406 -13.72718 -13.49254 -13.23316 -13.04565 -12.96632 -12.80826 -12.73104 -12.45103 -12.24878 -12.13016 -12.07782 -12.01083 -11.91679 -11.71835 -11.61285 -11.47231 -11.43058 -11.41102 -11.25719 -11.07136 -10.66970 -10.24936 -9.74092 -9.04844 -8.44861 -6.05649 1.28842 1.33608 1.43206 1.64733 1.89861 2.02634 2.20658 2.93694 2.95179 3.12408 3.46000 3.64896 3.74619 3.87239 3.99720 4.03758 4.17565 4.19203 4.23465 4.34269 4.36390 4.45103 4.50647 4.56997 4.57500 4.61029 4.66651 4.68809 4.71754 4.74767 4.74879 4.81032 4.82195 4.92384 5.03800 5.10566 5.12279 5.17908 5.24710 5.28221 5.35922 5.44191 5.49390 5.51325 5.52168 5.60692 5.82250 5.94629 5.98023 6.45831 6.54717 6.85411 7.19563 7.36147 7.93047 8.72786 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.018612 B = 0.002266 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.072535 B =12352.750918 C =13131.826694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.064 0.936 4 C -0.119 4.119 5 C -0.112 4.112 6 C -0.079 4.079 7 H 0.051 0.949 8 C -0.125 4.125 9 C 0.506 3.494 10 O -0.585 6.585 11 N -0.615 5.615 12 C 0.119 3.881 13 C 0.019 3.981 14 N -0.496 5.496 15 C 0.047 3.953 16 C 0.415 3.585 17 O -0.615 6.615 18 N -0.587 5.587 19 C -0.328 4.328 20 H 0.050 0.950 21 C -0.018 4.018 22 N -0.935 5.935 23 Si 0.967 3.033 24 H -0.255 1.255 25 H -0.278 1.278 26 H -0.229 1.229 27 C 0.028 3.972 28 C 0.125 3.875 29 C -0.110 4.110 30 H 0.056 0.944 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.052 0.948 34 H 0.074 0.926 35 H 0.047 0.953 36 H 0.069 0.931 37 H 0.124 0.876 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.108 0.892 41 H 0.032 0.968 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.128 0.872 45 H 0.390 0.610 46 H 0.279 0.721 47 H 0.029 0.971 48 H 0.091 0.909 49 H 0.071 0.929 50 H 0.092 0.908 51 H 0.086 0.914 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.981 -8.052 12.591 25.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.117 4.117 3 H 0.083 0.917 4 C -0.157 4.157 5 C -0.150 4.150 6 C -0.098 4.098 7 H 0.069 0.931 8 C -0.165 4.165 9 C 0.296 3.704 10 O -0.465 6.465 11 N -0.348 5.348 12 C -0.003 4.003 13 C -0.110 4.110 14 N -0.218 5.218 15 C -0.085 4.085 16 C 0.203 3.797 17 O -0.501 6.501 18 N -0.228 5.228 19 C -0.457 4.457 20 H 0.069 0.931 21 C -0.216 4.216 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.179 1.179 25 H -0.203 1.203 26 H -0.152 1.152 27 C -0.101 4.101 28 C 0.002 3.998 29 C -0.147 4.147 30 H 0.075 0.925 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.065 0.935 36 H 0.088 0.912 37 H 0.142 0.858 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.126 0.874 41 H 0.051 0.949 42 H 0.119 0.881 43 H 0.138 0.862 44 H 0.146 0.854 45 H 0.226 0.774 46 H 0.088 0.912 47 H 0.047 0.953 48 H 0.109 0.891 49 H 0.089 0.911 50 H 0.110 0.890 51 H 0.104 0.896 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.958 -7.443 13.472 26.002 hybrid contribution 1.703 0.758 -1.111 2.170 sum -19.255 -6.685 12.361 23.837 Atomic orbital electron populations 1.21849 0.93741 1.02199 1.01922 1.21740 0.96624 0.98965 0.94395 0.91747 1.22226 0.99254 0.96679 0.97545 1.22327 0.98746 0.98219 0.95662 1.21836 0.97814 0.95134 0.94985 0.93053 1.21764 0.95662 0.98002 1.01046 1.21361 0.86463 0.79649 0.82893 1.90637 1.61090 1.66166 1.28623 1.48330 1.29205 1.27143 1.30145 1.22120 0.94069 1.01083 0.83034 1.22828 0.92632 0.97418 0.98136 1.62559 1.09843 1.41773 1.07613 1.22331 0.97563 0.93140 0.95419 1.22411 0.82232 0.93021 0.82068 1.90503 1.63686 1.32159 1.63782 1.42242 1.44548 1.07848 1.28183 1.18967 1.27727 0.87377 1.11633 0.93138 1.26189 0.95705 1.03180 0.96545 1.69818 1.33235 1.30917 1.23570 0.85337 0.78825 0.77339 0.79842 1.17931 1.20304 1.15236 1.22590 0.96820 0.98729 0.91917 1.21561 0.85570 0.97289 0.95342 1.22499 0.95981 0.98987 0.97261 0.92469 0.92060 0.92287 0.92941 0.90740 0.93452 0.91202 0.85830 0.88228 0.88115 0.87399 0.94941 0.88118 0.86184 0.85371 0.77424 0.91169 0.95259 0.89108 0.91053 0.88971 0.89589 0.91645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 8.84 71.98 0.64 -1.00 16 2 C -0.10 -1.52 3.50 -10.07 -0.04 -1.55 16 3 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 4 C -0.12 -2.07 6.46 31.32 0.20 -1.86 16 5 C -0.11 -2.34 5.59 31.67 0.18 -2.16 16 6 C -0.08 -1.68 2.49 -9.50 -0.02 -1.70 16 7 H 0.05 1.40 8.05 -2.39 -0.02 1.38 16 8 C -0.13 -2.51 3.57 29.85 0.11 -2.40 16 9 C 0.51 14.39 7.50 87.66 0.66 15.04 16 10 O -0.58 -21.16 13.99 -3.05 -0.04 -21.20 16 11 N -0.62 -16.18 3.00 -817.13 -2.45 -18.63 16 12 C 0.12 2.38 6.53 86.50 0.57 2.94 16 13 C 0.02 0.50 5.14 86.54 0.44 0.94 16 14 N -0.50 -13.45 4.83 -899.00 -4.34 -17.79 16 15 C 0.05 1.31 5.84 85.56 0.50 1.81 16 16 C 0.41 17.53 7.18 87.66 0.63 18.16 16 17 O -0.62 -32.02 11.25 -3.05 -0.03 -32.05 16 18 N -0.59 -26.57 5.09 -306.99 -1.56 -28.13 16 19 C -0.33 -18.87 10.16 84.04 0.85 -18.02 16 20 H 0.05 3.51 7.39 -2.91 -0.02 3.49 16 21 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 22 N -0.93 -56.20 13.96 21.66 0.30 -55.90 16 23 Si 0.97 37.99 27.74 68.60 1.90 39.89 16 24 H -0.25 -9.42 7.11 99.48 0.71 -8.71 16 25 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 26 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 27 C 0.03 0.87 5.20 86.37 0.45 1.32 16 28 C 0.13 3.43 6.59 86.33 0.57 4.00 16 29 C -0.11 -1.74 5.81 31.67 0.18 -1.56 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 1.09 7.67 -2.39 -0.02 1.07 16 35 H 0.05 1.27 7.06 -2.39 -0.02 1.25 16 36 H 0.07 1.28 8.01 -2.39 -0.02 1.26 16 37 H 0.12 1.66 7.94 -2.39 -0.02 1.64 16 38 H 0.10 1.90 7.67 -2.39 -0.02 1.89 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.11 1.65 6.02 -2.39 -0.01 1.63 16 41 H 0.03 1.22 5.72 -2.38 -0.01 1.21 16 42 H 0.10 2.22 8.11 -2.39 -0.02 2.20 16 43 H 0.12 2.77 8.07 -2.39 -0.02 2.75 16 44 H 0.13 2.72 8.14 -2.39 -0.02 2.70 16 45 H 0.39 14.48 5.76 -92.71 -0.53 13.95 16 46 H 0.28 15.32 8.31 -92.71 -0.77 14.55 16 47 H 0.03 1.23 5.75 -2.39 -0.01 1.21 16 48 H 0.09 2.47 8.06 -2.38 -0.02 2.46 16 49 H 0.07 2.22 7.06 -2.39 -0.02 2.21 16 50 H 0.09 2.06 8.14 -2.38 -0.02 2.04 16 51 H 0.09 1.07 7.76 -2.38 -0.02 1.05 16 52 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 Total: -1.00 -80.32 394.16 0.47 -79.85 By element: Atomic # 1 Polarization: 40.19 SS G_CDS: 0.32 Total: 40.51 kcal Atomic # 6 Polarization: 7.08 SS G_CDS: 6.38 Total: 13.47 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -8.05 Total: -120.46 kcal Atomic # 8 Polarization: -53.18 SS G_CDS: -0.08 Total: -53.26 kcal Atomic # 14 Polarization: 37.99 SS G_CDS: 1.90 Total: 39.89 kcal Total: -80.32 0.47 -79.85 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113209687.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.801 kcal (2) G-P(sol) polarization free energy of solvation -80.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.51 seconds