Wall clock time and date at job start Tue Mar 31 2020 20:45:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.46887 * 2 1 4 4 C 1.53005 * 109.47249 * 119.99070 * 2 1 3 5 5 C 1.53002 * 109.47343 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.47066 * 300.00421 * 5 4 2 7 7 C 1.53000 * 109.47079 * 60.00018 * 6 5 4 8 8 C 1.52998 * 109.47573 * 239.99483 * 2 1 3 9 9 H 1.09007 * 109.47080 * 299.99973 * 8 2 1 10 10 C 1.50701 * 109.46917 * 60.00094 * 8 2 1 11 11 O 1.21279 * 120.00193 * 26.99405 * 10 8 2 12 12 N 1.34778 * 119.99645 * 207.00060 * 10 8 2 13 13 C 1.47081 * 120.87941 * 174.76977 * 12 10 8 14 14 C 1.53241 * 108.52108 * 231.16119 * 13 12 10 15 15 N 1.46902 * 109.34031 * 306.16891 * 14 13 12 16 16 C 1.46904 * 110.99879 * 187.25228 * 15 14 13 17 17 C 1.50702 * 109.46881 * 170.00336 * 16 15 14 18 18 O 1.21288 * 119.99807 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99728 * 180.02562 * 17 16 15 20 20 C 1.37092 * 119.99455 * 179.97438 * 19 17 16 21 21 H 1.07997 * 120.00649 * 359.97438 * 20 19 17 22 22 C 1.38961 * 119.99828 * 179.72263 * 20 19 17 23 23 N 1.31414 * 119.99648 * 0.27746 * 22 20 19 24 24 Si 1.86793 * 120.00116 * 180.27472 * 22 20 19 25 25 H 1.48493 * 109.47445 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46861 * 120.00220 * 24 22 20 27 27 H 1.48501 * 109.47204 * 239.99631 * 24 22 20 28 28 C 1.46903 * 111.26468 * 63.10798 * 15 14 13 29 29 C 1.47076 * 120.88552 * 354.74811 * 12 10 8 30 30 H 1.09007 * 109.46895 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47832 * 300.00433 * 1 2 3 32 32 H 1.09005 * 109.47336 * 60.00908 * 1 2 3 33 33 H 1.08999 * 109.47109 * 300.00940 * 4 2 1 34 34 H 1.09007 * 109.46765 * 60.00419 * 4 2 1 35 35 H 1.08997 * 109.46486 * 60.00651 * 5 4 2 36 36 H 1.08999 * 109.47013 * 180.02562 * 5 4 2 37 37 H 1.09000 * 109.47036 * 179.97438 * 6 5 4 38 38 H 1.09001 * 109.47596 * 300.00018 * 6 5 4 39 39 H 1.09008 * 109.46913 * 179.97438 * 7 6 5 40 40 H 1.09001 * 109.47353 * 60.00208 * 7 6 5 41 41 H 1.09007 * 109.62665 * 111.45165 * 13 12 10 42 42 H 1.08996 * 109.63083 * 350.87221 * 13 12 10 43 43 H 1.08999 * 109.49247 * 186.21146 * 14 13 12 44 44 H 1.09001 * 109.51427 * 66.14545 * 14 13 12 45 45 H 1.08992 * 109.46658 * 50.00137 * 16 15 14 46 46 H 1.09003 * 109.47058 * 290.00373 * 16 15 14 47 47 H 0.96995 * 119.99948 * 0.02562 * 19 17 16 48 48 H 0.97002 * 119.99879 * 179.97438 * 23 22 20 49 49 H 1.08994 * 109.49747 * 56.85261 * 28 15 14 50 50 H 1.09000 * 109.49068 * 176.93684 * 28 15 14 51 51 H 1.09001 * 109.62972 * 248.54984 * 29 12 10 52 52 H 1.09011 * 109.62836 * 8.93047 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0400 -0.7211 1.2494 5 6 3.5700 -0.7205 1.2497 6 6 4.0805 -1.4415 0.0006 7 6 3.5705 -0.7203 -1.2487 8 6 2.0400 -0.7213 -1.2491 9 1 1.6767 -1.7491 -1.2490 10 6 1.5377 -0.0110 -2.4797 11 8 1.2836 1.1740 -2.4346 12 7 1.3708 -0.6927 -3.6303 13 6 0.7751 -0.0477 -4.8102 14 6 -0.3617 -0.9352 -5.3282 15 7 0.1467 -2.2948 -5.5539 16 6 -0.8649 -3.1328 -6.2115 17 6 -0.2358 -4.4312 -6.6467 18 8 0.9394 -4.6383 -6.4300 19 7 -0.9792 -5.3623 -7.2769 20 6 -0.4068 -6.5432 -7.6732 21 1 0.6399 -6.7273 -7.4810 22 6 -1.1745 -7.5056 -8.3178 23 7 -2.4480 -7.2813 -8.5522 24 14 -0.3964 -9.1178 -8.8510 25 1 1.0395 -9.1235 -8.4727 26 1 -1.0890 -10.2474 -8.1803 27 1 -0.5216 -9.2647 -10.3234 28 6 0.6036 -2.9079 -4.2995 29 6 1.7799 -2.1012 -3.7394 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 -0.3634 0.5137 -0.8901 33 1 1.6765 -0.2072 2.1393 34 1 1.6767 -1.7488 1.2495 35 1 3.9328 0.3073 1.2499 36 1 3.9333 -1.2346 2.1396 37 1 5.1705 -1.4407 0.0006 38 1 3.7176 -2.4693 0.0004 39 1 3.9347 -1.2338 -2.1387 40 1 3.9335 0.3074 -1.2486 41 1 1.5322 0.0674 -5.5859 42 1 0.3795 0.9293 -4.5329 43 1 -0.7422 -0.5290 -6.2654 44 1 -1.1649 -0.9648 -4.5919 45 1 -1.2591 -2.6099 -7.0828 46 1 -1.6763 -3.3382 -5.5132 47 1 -1.9190 -5.1964 -7.4505 48 1 -2.9839 -7.9529 -9.0024 49 1 -0.2127 -2.9099 -3.5772 50 1 0.9232 -3.9323 -4.4906 51 1 2.6336 -2.1835 -4.4122 52 1 2.0521 -2.4809 -2.7545 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113268035.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:27 Heat of formation + Delta-G solvation = -101.667011 kcal Electronic energy + Delta-G solvation = -30516.689154 eV Core-core repulsion = 26514.348423 eV Total energy + Delta-G solvation = -4002.340730 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.76970 -40.45154 -39.22964 -38.25659 -36.05932 -35.43107 -33.49860 -33.25265 -32.74135 -31.58753 -30.10080 -27.74111 -27.16686 -25.61389 -24.89113 -24.16422 -22.54844 -21.92669 -21.07059 -20.73828 -19.91056 -19.76156 -18.25510 -17.79541 -17.12593 -16.61544 -16.50812 -16.35234 -16.10185 -15.70494 -15.52501 -15.48935 -15.34030 -15.26126 -15.00651 -14.82041 -14.45512 -14.01198 -13.76386 -13.62505 -13.50729 -13.20717 -13.20184 -12.97028 -12.82160 -12.79297 -12.48781 -12.41251 -12.39588 -12.27405 -12.21568 -12.11606 -12.08317 -11.75886 -11.45750 -11.41952 -11.33189 -11.00815 -10.53616 -10.32607 -9.98616 -9.76190 -9.22776 -8.44768 -5.92796 1.37807 1.43507 1.57049 1.57531 1.91725 2.07451 2.29442 2.71634 3.22486 3.36365 3.39462 3.61909 3.75967 3.83653 3.96294 4.06894 4.14170 4.16721 4.19231 4.24341 4.27956 4.38572 4.45752 4.46910 4.48347 4.51864 4.54515 4.56926 4.61065 4.71484 4.73112 4.82113 4.87108 4.91622 4.98492 5.02540 5.04168 5.15823 5.18016 5.30653 5.32874 5.33697 5.40119 5.43268 5.44674 5.58512 5.81802 6.04754 6.12941 6.38694 6.62496 7.12265 7.15341 7.59093 8.14018 8.72898 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.017824 B = 0.002373 C = 0.002232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.570064 B =11796.931940 C =12541.097689 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.069 4.069 3 H 0.062 0.938 4 C -0.110 4.110 5 C -0.120 4.120 6 C -0.115 4.115 7 C -0.107 4.107 8 C -0.100 4.100 9 H 0.103 0.897 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.612 5.612 13 C 0.119 3.881 14 C 0.047 3.953 15 N -0.530 5.530 16 C 0.058 3.942 17 C 0.444 3.556 18 O -0.609 6.609 19 N -0.576 5.576 20 C -0.327 4.327 21 H 0.081 0.919 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.991 3.009 25 H -0.271 1.271 26 H -0.272 1.272 27 H -0.273 1.273 28 C 0.042 3.958 29 C 0.122 3.878 30 H 0.058 0.942 31 H 0.065 0.935 32 H 0.036 0.964 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.058 0.942 36 H 0.076 0.924 37 H 0.075 0.925 38 H 0.072 0.928 39 H 0.069 0.931 40 H 0.058 0.942 41 H 0.074 0.926 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.038 0.962 45 H 0.111 0.889 46 H 0.065 0.935 47 H 0.395 0.605 48 H 0.276 0.724 49 H 0.034 0.966 50 H 0.084 0.916 51 H 0.073 0.927 52 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.144 13.038 17.448 22.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.088 4.088 3 H 0.081 0.919 4 C -0.147 4.147 5 C -0.158 4.158 6 C -0.152 4.152 7 C -0.145 4.145 8 C -0.121 4.121 9 H 0.121 0.879 10 C 0.311 3.689 11 O -0.458 6.458 12 N -0.345 5.345 13 C -0.004 4.004 14 C -0.081 4.081 15 N -0.255 5.255 16 C -0.073 4.073 17 C 0.231 3.769 18 O -0.495 6.495 19 N -0.213 5.213 20 C -0.457 4.457 21 H 0.099 0.901 22 C -0.214 4.214 23 N -0.564 5.564 24 Si 0.815 3.185 25 H -0.196 1.196 26 H -0.198 1.198 27 H -0.199 1.199 28 C -0.087 4.087 29 C -0.001 4.001 30 H 0.077 0.923 31 H 0.084 0.916 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.095 0.905 37 H 0.093 0.907 38 H 0.091 0.909 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.110 0.890 43 H 0.122 0.878 44 H 0.056 0.944 45 H 0.129 0.871 46 H 0.083 0.917 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.102 0.898 51 H 0.091 0.909 52 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 7.050 13.446 17.206 22.946 hybrid contribution -1.178 -0.776 -0.424 1.473 sum 5.871 12.669 16.782 21.832 Atomic orbital electron populations 1.21850 0.95390 1.01712 1.01598 1.20920 0.95394 0.99239 0.93280 0.91904 1.21593 0.95924 1.00853 0.96348 1.21564 0.95170 1.00835 0.98200 1.21529 1.01013 0.99523 0.93138 1.21498 0.91548 1.01511 0.99898 1.21503 0.98107 1.00749 0.91717 0.87921 1.21130 0.76343 0.86831 0.84616 1.90634 1.53101 1.16842 1.85225 1.48354 1.61313 1.12883 1.11952 1.21668 0.95604 0.96224 0.86924 1.22528 0.95731 0.88158 1.01655 1.61483 1.37674 1.02062 1.24318 1.21726 0.93016 0.92052 1.00502 1.20661 0.87237 0.86430 0.82527 1.90455 1.17811 1.80737 1.60534 1.41952 1.12217 1.15269 1.51864 1.19685 0.96309 0.93727 1.35952 0.90090 1.26024 0.95849 1.02634 0.96919 1.69682 1.06867 1.37140 1.42681 0.84890 0.78222 0.77307 0.78058 1.19596 1.19769 1.19878 1.22535 0.97080 0.99812 0.89271 1.21886 0.96673 0.78939 1.02564 0.92312 0.91590 0.94523 0.90924 0.91147 0.92313 0.90510 0.90666 0.90920 0.91241 0.92344 0.90806 0.88978 0.87779 0.94358 0.87062 0.91726 0.77131 0.91426 0.94752 0.89798 0.90882 0.87103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 8.91 71.98 0.64 -2.16 16 2 C -0.07 -1.24 1.89 -10.80 -0.02 -1.26 16 3 H 0.06 1.36 7.86 -2.39 -0.02 1.34 16 4 C -0.11 -1.42 5.20 30.60 0.16 -1.26 16 5 C -0.12 -1.40 5.92 30.59 0.18 -1.22 16 6 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 7 C -0.11 -1.73 5.07 30.61 0.16 -1.58 16 8 C -0.10 -1.87 1.21 -11.52 -0.01 -1.88 16 9 H 0.10 1.71 6.35 -2.38 -0.02 1.70 16 10 C 0.52 13.03 5.94 87.66 0.52 13.55 16 11 O -0.58 -18.09 14.63 -3.03 -0.04 -18.14 16 12 N -0.61 -14.98 3.01 -817.92 -2.46 -17.45 16 13 C 0.12 2.87 6.58 86.35 0.57 3.43 16 14 C 0.05 1.14 5.62 86.38 0.49 1.62 16 15 N -0.53 -16.17 4.37 -899.81 -3.93 -20.10 16 16 C 0.06 1.91 5.45 85.56 0.47 2.38 16 17 C 0.44 20.10 7.44 87.66 0.65 20.76 16 18 O -0.61 -31.56 13.91 -3.05 -0.04 -31.61 16 19 N -0.58 -28.58 5.29 -306.98 -1.62 -30.21 16 20 C -0.33 -18.05 9.68 84.04 0.81 -17.23 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 23 N -0.92 -49.11 13.05 21.67 0.28 -48.83 16 24 Si 0.99 42.15 29.55 68.60 2.03 44.18 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 C 0.04 1.22 5.26 86.38 0.45 1.67 16 29 C 0.12 2.91 6.14 86.35 0.53 3.44 16 30 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 31 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.87 6.53 -2.38 -0.02 0.86 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 37 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.07 1.12 7.66 -2.38 -0.02 1.11 16 40 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 41 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.09 2.25 7.10 -2.39 -0.02 2.23 16 43 H 0.10 2.13 7.99 -2.39 -0.02 2.11 16 44 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 45 H 0.11 3.22 7.97 -2.39 -0.02 3.20 16 46 H 0.06 1.93 8.12 -2.39 -0.02 1.92 16 47 H 0.40 18.77 7.90 -92.71 -0.73 18.04 16 48 H 0.28 13.78 8.31 -92.71 -0.77 13.01 16 49 H 0.03 0.94 8.14 -2.39 -0.02 0.93 16 50 H 0.08 3.05 5.76 -2.39 -0.01 3.04 16 51 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 52 H 0.11 2.07 5.29 -2.38 -0.01 2.06 16 Total: -1.00 -67.28 396.73 0.62 -66.65 By element: Atomic # 1 Polarization: 36.59 SS G_CDS: 0.18 Total: 36.76 kcal Atomic # 6 Polarization: 12.49 SS G_CDS: 6.24 Total: 18.73 kcal Atomic # 7 Polarization: -108.85 SS G_CDS: -7.73 Total: -116.58 kcal Atomic # 8 Polarization: -49.66 SS G_CDS: -0.09 Total: -49.74 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -67.28 0.62 -66.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113268035.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.014 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.653 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds