Wall clock time and date at job start Tue Mar 31 2020 20:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.52993 * 109.47011 * 120.00044 * 2 1 3 5 5 C 1.53007 * 109.47187 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46969 * 300.00196 * 5 4 2 7 7 C 1.53000 * 109.47178 * 59.99671 * 6 5 4 8 8 C 1.52998 * 109.47263 * 300.00015 * 7 6 5 9 9 H 1.09005 * 109.47144 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47108 * 300.00153 * 8 7 6 11 11 O 1.21275 * 119.99932 * 107.21280 * 10 8 7 12 12 N 1.34774 * 119.99974 * 287.20892 * 10 8 7 13 13 C 1.47076 * 120.88272 * 184.29887 * 12 10 8 14 14 C 1.53692 * 108.27949 * 128.75348 * 13 12 10 15 15 N 1.46898 * 109.25502 * 54.08553 * 14 13 12 16 16 C 1.46903 * 110.99880 * 172.60981 * 15 14 13 17 17 C 1.50701 * 109.47011 * 294.29571 * 16 15 14 18 18 O 1.21300 * 120.00028 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00046 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00005 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99776 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99888 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00290 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47343 * 60.00030 * 24 22 20 26 26 H 1.48500 * 109.46953 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46707 * 300.00277 * 24 22 20 28 28 C 1.46895 * 111.26769 * 296.75264 * 15 14 13 29 29 C 1.47086 * 120.88153 * 4.57377 * 12 10 8 30 30 H 1.09002 * 109.47048 * 300.00019 * 1 2 3 31 31 H 1.08999 * 109.47529 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47224 * 59.99584 * 1 2 3 33 33 H 1.09001 * 109.47597 * 299.99559 * 4 2 1 34 34 H 1.08999 * 109.47577 * 59.99888 * 4 2 1 35 35 H 1.09005 * 109.46776 * 59.99915 * 5 4 2 36 36 H 1.08997 * 109.46966 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.47292 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.47068 * 300.00046 * 6 5 4 39 39 H 1.08999 * 109.47059 * 60.00561 * 7 6 5 40 40 H 1.09002 * 109.47015 * 180.02562 * 7 6 5 41 41 H 1.09004 * 109.62825 * 248.52194 * 13 12 10 42 42 H 1.09000 * 109.63046 * 9.10057 * 13 12 10 43 43 H 1.08996 * 109.64939 * 294.08050 * 14 13 12 44 44 H 1.09003 * 109.44342 * 173.95898 * 14 13 12 45 45 H 1.08998 * 109.47543 * 54.29709 * 16 15 14 46 46 H 1.09003 * 109.47096 * 174.30101 * 16 15 14 47 47 H 0.96999 * 120.00395 * 0.02562 * 19 17 16 48 48 H 0.97000 * 120.00149 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.49863 * 303.14693 * 28 15 14 50 50 H 1.09002 * 109.51732 * 183.08048 * 28 15 14 51 51 H 1.09002 * 109.62719 * 350.89599 * 29 12 10 52 52 H 1.08997 * 109.62437 * 111.47483 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0794 -1.4434 -0.0004 7 6 3.5694 -0.7221 -1.2496 8 6 2.0394 -0.7216 -1.2493 9 1 1.6761 -0.2081 -2.1395 10 6 1.5366 -2.1422 -1.2489 11 8 1.0415 -2.6100 -0.2455 12 7 1.6370 -2.8929 -2.3638 13 6 1.0690 -4.2486 -2.4148 14 6 0.1877 -4.3550 -3.6694 15 7 0.9739 -3.9670 -4.8480 16 6 0.2259 -4.2209 -6.0866 17 6 0.0221 -5.7045 -6.2552 18 8 0.4567 -6.4746 -5.4249 19 7 -0.6432 -6.1757 -7.3285 20 6 -0.8281 -7.5254 -7.4821 21 1 -0.4412 -8.2110 -6.7428 22 6 -1.5144 -8.0111 -8.5883 23 7 -1.9857 -7.1769 -9.4876 24 14 -1.7671 -9.8502 -8.7973 25 1 -2.5321 -10.3794 -7.6397 26 1 -2.5226 -10.1069 -10.0496 27 1 -0.4468 -10.5262 -8.8687 28 6 1.3973 -2.5627 -4.7673 29 6 2.3229 -2.3804 -3.5597 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6767 -0.2074 2.1392 34 1 1.6766 -1.7489 1.2493 35 1 3.9337 0.3058 1.2487 36 1 3.9333 -1.2352 2.1391 37 1 5.1694 -1.4434 -0.0008 38 1 3.7157 -2.4710 -0.0002 39 1 3.9332 0.3054 -1.2498 40 1 3.9320 -1.2365 -2.1396 41 1 1.8743 -4.9813 -2.4660 42 1 0.4647 -4.4261 -1.5251 43 1 -0.6717 -3.6919 -3.5710 44 1 -0.1571 -5.3827 -3.7844 45 1 -0.7431 -3.7246 -6.0342 46 1 0.7875 -3.8325 -6.9363 47 1 -0.9904 -5.5599 -7.9927 48 1 -2.4645 -7.5160 -10.2600 49 1 0.5211 -1.9245 -4.6536 50 1 1.9301 -2.2901 -5.6783 51 1 2.5480 -1.3221 -3.4274 52 1 3.2464 -2.9370 -3.7188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113268037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:51 Heat of formation + Delta-G solvation = -71.198646 kcal Electronic energy + Delta-G solvation = -30734.436820 eV Core-core repulsion = 26733.417297 eV Total energy + Delta-G solvation = -4001.019523 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.09898 -39.07587 -37.83024 -36.81967 -34.65471 -33.79176 -32.72777 -31.81978 -31.24207 -30.63063 -28.76366 -26.75375 -25.76148 -24.15340 -23.81402 -23.14823 -21.61127 -21.33827 -20.23123 -19.26623 -18.62711 -17.89013 -17.02907 -16.11762 -15.95295 -15.64356 -15.24106 -15.06584 -14.87609 -14.69941 -14.36362 -14.26929 -14.09905 -13.84055 -13.70168 -13.61606 -13.41297 -13.07051 -12.80725 -12.54405 -12.27664 -12.19231 -11.89389 -11.67747 -11.57424 -11.56208 -11.51429 -11.34927 -11.15924 -11.04144 -10.98711 -10.93802 -10.75127 -10.45464 -10.31330 -10.23782 -10.23247 -9.49541 -9.27045 -8.81382 -8.37612 -8.00890 -7.91254 -6.43768 -3.84678 2.58812 2.92693 3.18775 3.24779 3.29021 3.86190 3.91276 4.21082 4.24491 4.37232 4.49351 4.70386 4.84270 4.89311 4.93651 4.96381 5.04672 5.10387 5.17752 5.22144 5.24631 5.26989 5.31585 5.34982 5.43797 5.48796 5.58609 5.59646 5.67037 5.70032 5.75296 5.77081 5.79043 5.82428 5.88472 5.94405 6.01604 6.04707 6.13643 6.15175 6.22519 6.23180 6.24014 6.46850 6.62043 7.13317 7.29399 7.44111 7.53150 8.03788 8.18699 8.59053 9.15760 9.51750 10.03173 10.73807 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029369 B = 0.002169 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.142864 B =12904.718713 C =12976.836176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.066 4.066 3 H 0.070 0.930 4 C -0.137 4.137 5 C -0.116 4.116 6 C -0.122 4.122 7 C -0.113 4.113 8 C -0.105 4.105 9 H 0.091 0.909 10 C 0.524 3.476 11 O -0.535 6.535 12 N -0.611 5.611 13 C 0.120 3.880 14 C 0.041 3.959 15 N -0.514 5.514 16 C 0.047 3.953 17 C 0.443 3.557 18 O -0.578 6.578 19 N -0.563 5.563 20 C -0.299 4.299 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.931 3.069 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.273 1.273 28 C 0.038 3.962 29 C 0.111 3.889 30 H 0.052 0.948 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.106 0.894 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.073 0.927 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.091 0.909 43 H 0.026 0.974 44 H 0.115 0.885 45 H 0.047 0.953 46 H 0.090 0.910 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.034 0.966 50 H 0.086 0.914 51 H 0.088 0.912 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.966 18.215 13.902 24.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.085 4.085 3 H 0.088 0.912 4 C -0.174 4.174 5 C -0.154 4.154 6 C -0.159 4.159 7 C -0.151 4.151 8 C -0.126 4.126 9 H 0.109 0.891 10 C 0.313 3.687 11 O -0.413 6.413 12 N -0.345 5.345 13 C -0.002 4.002 14 C -0.088 4.088 15 N -0.239 5.239 16 C -0.085 4.085 17 C 0.228 3.772 18 O -0.462 6.462 19 N -0.200 5.200 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.091 4.091 29 C -0.013 4.013 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.124 0.876 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.109 0.891 43 H 0.044 0.956 44 H 0.132 0.868 45 H 0.065 0.935 46 H 0.108 0.892 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.053 0.947 50 H 0.105 0.895 51 H 0.106 0.894 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.295 17.104 14.797 24.452 hybrid contribution -1.087 0.122 -0.936 1.440 sum 8.208 17.226 13.862 23.585 Atomic orbital electron populations 1.21969 0.95028 1.03377 1.00941 1.20873 0.95818 0.98172 0.93635 0.91213 1.22033 0.94702 1.04521 0.96146 1.21502 0.96481 0.99910 0.97462 1.21547 1.00064 0.99872 0.94448 1.21624 0.92705 1.01751 0.99020 1.21414 0.97194 0.93458 1.00553 0.89141 1.20532 0.78158 0.87574 0.82407 1.90516 1.45552 1.73594 1.31643 1.48302 1.56430 1.16591 1.13138 1.21819 0.97879 0.82237 0.98230 1.22733 0.93421 1.03744 0.88855 1.61511 1.42385 1.18251 1.01718 1.21851 0.97029 0.96813 0.92768 1.19710 0.84090 0.89002 0.84394 1.90487 1.53757 1.58188 1.43762 1.41866 1.48844 1.08304 1.20940 1.19644 1.33200 0.82596 1.07436 0.87935 1.25262 0.96797 1.00306 0.95546 1.69598 1.37628 1.35134 1.11949 0.85920 0.78594 0.82190 0.77537 1.19899 1.20991 1.19869 1.22511 0.98387 0.89631 0.98557 1.21957 0.95859 0.99559 0.83893 0.92849 0.90884 0.93439 0.92845 0.87559 0.92621 0.92297 0.91943 0.91791 0.90834 0.91094 0.90490 0.89056 0.95583 0.86753 0.93485 0.89220 0.77500 0.91805 0.94740 0.89537 0.89399 0.90290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.54 8.90 37.16 0.33 -1.20 16 2 C -0.07 -0.60 2.47 -90.63 -0.22 -0.83 16 3 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 4 C -0.14 -1.36 4.93 -26.73 -0.13 -1.49 16 5 C -0.12 -0.99 5.92 -26.73 -0.16 -1.15 16 6 C -0.12 -1.06 5.70 -26.73 -0.15 -1.21 16 7 C -0.11 -0.86 5.10 -26.73 -0.14 -1.00 16 8 C -0.10 -0.94 1.69 -91.77 -0.16 -1.10 16 9 H 0.09 0.71 7.17 -51.93 -0.37 0.33 16 10 C 0.52 6.34 5.07 -10.99 -0.06 6.28 16 11 O -0.53 -7.90 11.03 5.56 0.06 -7.84 16 12 N -0.61 -7.46 3.00 -172.18 -0.52 -7.98 16 13 C 0.12 1.74 6.61 -3.37 -0.02 1.72 16 14 C 0.04 0.66 5.27 -3.47 -0.02 0.64 16 15 N -0.51 -8.05 4.37 -235.47 -1.03 -9.08 16 16 C 0.05 0.79 5.45 -4.97 -0.03 0.77 16 17 C 0.44 10.10 7.44 -10.99 -0.08 10.02 16 18 O -0.58 -15.00 13.91 5.54 0.08 -14.92 16 19 N -0.56 -13.95 5.29 -10.96 -0.06 -14.01 16 20 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 21 H 0.10 2.94 7.16 -52.49 -0.38 2.57 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.25 13.05 55.50 0.72 -23.53 16 24 Si 0.93 20.87 29.55 -169.99 -5.02 15.85 16 25 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 28 C 0.04 0.44 5.62 -3.70 -0.02 0.42 16 29 C 0.11 1.10 5.39 -3.60 -0.02 1.08 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.90 5.99 -51.93 -0.31 0.59 16 32 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.11 1.35 5.09 -51.93 -0.26 1.09 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.70 7.21 -51.93 -0.37 0.33 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.50 6.02 -51.93 -0.31 0.19 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.09 1.35 7.09 -51.93 -0.37 0.98 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.11 2.22 5.76 -51.93 -0.30 1.92 16 45 H 0.05 0.75 8.12 -51.93 -0.42 0.33 16 46 H 0.09 1.35 7.97 -51.93 -0.41 0.94 16 47 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 48 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 49 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.09 0.85 7.99 -51.93 -0.41 0.43 16 51 H 0.09 0.64 4.84 -51.93 -0.25 0.38 16 52 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 LS Contribution 386.60 15.07 5.83 5.83 Total: -1.00 -30.92 386.60 -9.76 -40.69 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: -8.71 Total: 9.90 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: -1.11 Total: 5.09 kcal Atomic # 7 Polarization: -53.71 SS G_CDS: -0.88 Total: -54.59 kcal Atomic # 8 Polarization: -22.90 SS G_CDS: 0.14 Total: -22.76 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.92 -9.76 -40.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113268037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.513 kcal (2) G-P(sol) polarization free energy of solvation -30.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds