Wall clock time and date at job start Tue Mar 31 2020 20:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09005 * 109.46885 * 2 1 4 4 C 1.52993 * 109.47011 * 120.00044 * 2 1 3 5 5 C 1.53007 * 109.47187 * 179.97438 * 4 2 1 6 6 C 1.52999 * 109.46969 * 300.00196 * 5 4 2 7 7 C 1.53000 * 109.47178 * 59.99671 * 6 5 4 8 8 C 1.52998 * 109.47263 * 300.00015 * 7 6 5 9 9 H 1.09005 * 109.47144 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.47108 * 300.00153 * 8 7 6 11 11 O 1.21275 * 119.99932 * 107.21280 * 10 8 7 12 12 N 1.34774 * 119.99974 * 287.20892 * 10 8 7 13 13 C 1.47076 * 120.88272 * 184.29887 * 12 10 8 14 14 C 1.53692 * 108.27949 * 128.75348 * 13 12 10 15 15 N 1.46898 * 109.25502 * 54.08553 * 14 13 12 16 16 C 1.46903 * 110.99880 * 172.60981 * 15 14 13 17 17 C 1.50701 * 109.47011 * 294.29571 * 16 15 14 18 18 O 1.21300 * 120.00028 * 0.02562 * 17 16 15 19 19 N 1.34775 * 120.00046 * 180.02562 * 17 16 15 20 20 C 1.37101 * 120.00005 * 179.97438 * 19 17 16 21 21 H 1.07997 * 119.99776 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99888 * 179.97438 * 20 19 17 23 23 N 1.31404 * 120.00290 * 0.02562 * 22 20 19 24 24 Si 1.86806 * 119.99821 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47343 * 60.00030 * 24 22 20 26 26 H 1.48500 * 109.46953 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.46707 * 300.00277 * 24 22 20 28 28 C 1.46895 * 111.26769 * 296.75264 * 15 14 13 29 29 C 1.47086 * 120.88153 * 4.57377 * 12 10 8 30 30 H 1.09002 * 109.47048 * 300.00019 * 1 2 3 31 31 H 1.08999 * 109.47529 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47224 * 59.99584 * 1 2 3 33 33 H 1.09001 * 109.47597 * 299.99559 * 4 2 1 34 34 H 1.08999 * 109.47577 * 59.99888 * 4 2 1 35 35 H 1.09005 * 109.46776 * 59.99915 * 5 4 2 36 36 H 1.08997 * 109.46966 * 179.97438 * 5 4 2 37 37 H 1.08999 * 109.47292 * 179.97438 * 6 5 4 38 38 H 1.09005 * 109.47068 * 300.00046 * 6 5 4 39 39 H 1.08999 * 109.47059 * 60.00561 * 7 6 5 40 40 H 1.09002 * 109.47015 * 180.02562 * 7 6 5 41 41 H 1.09004 * 109.62825 * 248.52194 * 13 12 10 42 42 H 1.09000 * 109.63046 * 9.10057 * 13 12 10 43 43 H 1.08996 * 109.64939 * 294.08050 * 14 13 12 44 44 H 1.09003 * 109.44342 * 173.95898 * 14 13 12 45 45 H 1.08998 * 109.47543 * 54.29709 * 16 15 14 46 46 H 1.09003 * 109.47096 * 174.30101 * 16 15 14 47 47 H 0.96999 * 120.00395 * 0.02562 * 19 17 16 48 48 H 0.97000 * 120.00149 * 179.97438 * 23 22 20 49 49 H 1.08996 * 109.49863 * 303.14693 * 28 15 14 50 50 H 1.09002 * 109.51732 * 183.08048 * 28 15 14 51 51 H 1.09002 * 109.62719 * 350.89599 * 29 12 10 52 52 H 1.08997 * 109.62437 * 111.47483 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2492 5 6 3.5700 -0.7218 1.2489 6 6 4.0794 -1.4434 -0.0004 7 6 3.5694 -0.7221 -1.2496 8 6 2.0394 -0.7216 -1.2493 9 1 1.6761 -0.2081 -2.1395 10 6 1.5366 -2.1422 -1.2489 11 8 1.0415 -2.6100 -0.2455 12 7 1.6370 -2.8929 -2.3638 13 6 1.0690 -4.2486 -2.4148 14 6 0.1877 -4.3550 -3.6694 15 7 0.9739 -3.9670 -4.8480 16 6 0.2259 -4.2209 -6.0866 17 6 0.0221 -5.7045 -6.2552 18 8 0.4567 -6.4746 -5.4249 19 7 -0.6432 -6.1757 -7.3285 20 6 -0.8281 -7.5254 -7.4821 21 1 -0.4412 -8.2110 -6.7428 22 6 -1.5144 -8.0111 -8.5883 23 7 -1.9857 -7.1769 -9.4876 24 14 -1.7671 -9.8502 -8.7973 25 1 -2.5321 -10.3794 -7.6397 26 1 -2.5226 -10.1069 -10.0496 27 1 -0.4468 -10.5262 -8.8687 28 6 1.3973 -2.5627 -4.7673 29 6 2.3229 -2.3804 -3.5597 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.6767 -0.2074 2.1392 34 1 1.6766 -1.7489 1.2493 35 1 3.9337 0.3058 1.2487 36 1 3.9333 -1.2352 2.1391 37 1 5.1694 -1.4434 -0.0008 38 1 3.7157 -2.4710 -0.0002 39 1 3.9332 0.3054 -1.2498 40 1 3.9320 -1.2365 -2.1396 41 1 1.8743 -4.9813 -2.4660 42 1 0.4647 -4.4261 -1.5251 43 1 -0.6717 -3.6919 -3.5710 44 1 -0.1571 -5.3827 -3.7844 45 1 -0.7431 -3.7246 -6.0342 46 1 0.7875 -3.8325 -6.9363 47 1 -0.9904 -5.5599 -7.9927 48 1 -2.4645 -7.5160 -10.2600 49 1 0.5211 -1.9245 -4.6536 50 1 1.9301 -2.2901 -5.6783 51 1 2.5480 -1.3221 -3.4274 52 1 3.2464 -2.9370 -3.7188 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113268037.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:45:47 Heat of formation + Delta-G solvation = -91.779735 kcal Electronic energy + Delta-G solvation = -30735.329283 eV Core-core repulsion = 26733.417297 eV Total energy + Delta-G solvation = -4001.911986 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.97711 -40.49964 -39.17110 -37.82458 -36.10047 -35.45641 -33.43185 -33.28875 -32.69437 -31.52123 -30.03486 -27.65921 -27.18872 -25.62550 -24.87401 -24.04779 -22.41574 -22.13469 -21.22144 -20.97915 -19.89314 -19.54491 -17.94492 -17.76848 -16.80837 -16.69488 -16.58307 -16.31315 -16.21265 -15.85440 -15.59320 -15.41308 -15.33184 -15.02966 -14.87209 -14.72071 -14.25980 -14.09299 -13.92841 -13.57160 -13.54241 -13.38423 -13.01032 -12.92976 -12.80569 -12.68237 -12.43824 -12.42152 -12.33248 -12.27944 -12.19638 -12.15298 -12.06562 -11.71280 -11.64343 -11.43720 -10.99003 -10.90180 -10.37311 -10.13384 -9.99444 -9.69783 -9.20312 -8.45891 -5.94094 1.39458 1.41420 1.51922 1.68395 1.97410 2.07033 2.28638 2.74302 3.21097 3.36520 3.47231 3.69089 3.81965 3.88238 3.98800 4.05868 4.12694 4.21689 4.24883 4.27247 4.32099 4.43724 4.49537 4.50256 4.53343 4.57027 4.60218 4.60797 4.70292 4.74867 4.82291 4.84652 4.89644 4.90995 5.02075 5.05920 5.08950 5.14082 5.24542 5.32452 5.35858 5.41491 5.44532 5.47695 5.48372 5.76218 5.82717 6.03356 6.16991 6.51765 6.61808 7.14132 7.26735 7.58020 8.13944 8.71222 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.029369 B = 0.002169 C = 0.002157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 953.142864 B =12904.718713 C =12976.836176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.065 4.065 3 H 0.097 0.903 4 C -0.138 4.138 5 C -0.113 4.113 6 C -0.123 4.123 7 C -0.110 4.110 8 C -0.100 4.100 9 H 0.115 0.885 10 C 0.518 3.482 11 O -0.569 6.569 12 N -0.613 5.613 13 C 0.131 3.869 14 C 0.051 3.949 15 N -0.530 5.530 16 C 0.059 3.941 17 C 0.440 3.560 18 O -0.614 6.614 19 N -0.575 5.575 20 C -0.331 4.331 21 H 0.078 0.922 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.990 3.010 25 H -0.274 1.274 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.037 3.963 29 C 0.110 3.890 30 H 0.057 0.943 31 H 0.040 0.960 32 H 0.058 0.942 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.052 0.948 37 H 0.075 0.925 38 H 0.031 0.969 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.062 0.938 42 H 0.078 0.922 43 H 0.028 0.972 44 H 0.073 0.927 45 H 0.064 0.936 46 H 0.119 0.881 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.044 0.956 50 H 0.113 0.887 51 H 0.126 0.874 52 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.295 21.308 13.011 27.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.084 4.084 3 H 0.115 0.885 4 C -0.175 4.175 5 C -0.151 4.151 6 C -0.160 4.160 7 C -0.147 4.147 8 C -0.121 4.121 9 H 0.133 0.867 10 C 0.309 3.691 11 O -0.448 6.448 12 N -0.346 5.346 13 C 0.007 3.993 14 C -0.078 4.078 15 N -0.255 5.255 16 C -0.072 4.072 17 C 0.228 3.772 18 O -0.500 6.500 19 N -0.212 5.212 20 C -0.460 4.460 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.195 1.195 27 H -0.197 1.197 28 C -0.091 4.091 29 C -0.012 4.012 30 H 0.076 0.924 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.090 0.910 35 H 0.095 0.905 36 H 0.071 0.929 37 H 0.094 0.906 38 H 0.050 0.950 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.046 0.954 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.137 0.863 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.062 0.938 50 H 0.131 0.869 51 H 0.144 0.856 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.637 20.237 13.894 26.753 hybrid contribution -1.487 -0.828 -0.549 1.788 sum 9.150 19.409 13.345 25.269 Atomic orbital electron populations 1.21936 0.95940 1.01491 1.01785 1.20919 0.95054 0.99314 0.93090 0.88529 1.21963 0.95837 1.02657 0.97036 1.21490 0.95304 1.01014 0.97285 1.21546 1.00845 0.98251 0.95397 1.21673 0.91220 1.03312 0.98507 1.21502 0.98306 0.90763 1.01498 0.86733 1.21269 0.77399 0.88814 0.81598 1.90533 1.46874 1.74526 1.32912 1.48377 1.56484 1.15481 1.14293 1.21461 0.97046 0.83876 0.96899 1.22465 0.93967 1.01322 0.90018 1.61473 1.41817 1.21641 1.00604 1.21732 0.98738 0.92097 0.94588 1.20809 0.82037 0.91581 0.82805 1.90472 1.54670 1.60143 1.44717 1.41935 1.49829 1.07585 1.21881 1.19591 1.34803 0.83817 1.07837 0.90400 1.25999 0.96038 1.04373 0.94862 1.69656 1.37684 1.36626 1.12165 0.85028 0.78515 0.77237 0.77800 1.19893 1.19515 1.19714 1.22698 0.99178 0.86734 1.00476 1.22182 0.95110 1.01682 0.82182 0.92368 0.94067 0.92249 0.92680 0.90962 0.90498 0.92920 0.90608 0.95046 0.87976 0.90180 0.91952 0.90373 0.95370 0.90904 0.91849 0.86343 0.77020 0.91342 0.93794 0.86896 0.85600 0.90247 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.83 8.90 71.98 0.64 -2.19 16 2 C -0.07 -1.02 2.47 -10.80 -0.03 -1.05 16 3 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 4 C -0.14 -2.62 4.93 30.59 0.15 -2.47 16 5 C -0.11 -1.74 5.92 30.60 0.18 -1.56 16 6 C -0.12 -1.90 5.70 30.59 0.17 -1.73 16 7 C -0.11 -1.23 5.10 30.59 0.16 -1.07 16 8 C -0.10 -1.48 1.69 -11.54 -0.02 -1.50 16 9 H 0.11 1.21 7.17 -2.38 -0.02 1.19 16 10 C 0.52 12.16 5.07 87.66 0.44 12.60 16 11 O -0.57 -17.53 11.03 -3.01 -0.03 -17.56 16 12 N -0.61 -14.44 3.00 -817.05 -2.45 -16.89 16 13 C 0.13 3.94 6.61 86.50 0.57 4.52 16 14 C 0.05 1.69 5.27 86.54 0.46 2.15 16 15 N -0.53 -16.04 4.37 -898.90 -3.93 -19.97 16 16 C 0.06 1.95 5.45 85.56 0.47 2.41 16 17 C 0.44 20.47 7.44 87.66 0.65 21.13 16 18 O -0.61 -33.24 13.91 -3.09 -0.04 -33.28 16 19 N -0.57 -29.09 5.29 -306.98 -1.62 -30.71 16 20 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 21 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 22 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.39 13.05 21.66 0.28 -49.11 16 24 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 25 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 28 C 0.04 0.72 5.62 86.38 0.49 1.21 16 29 C 0.11 1.86 5.39 86.35 0.47 2.32 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.96 16 31 H 0.04 1.03 5.99 -2.39 -0.01 1.01 16 32 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.05 0.98 8.14 -2.39 -0.02 0.97 16 34 H 0.07 1.92 5.09 -2.39 -0.01 1.91 16 35 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.03 0.69 7.21 -2.38 -0.02 0.67 16 39 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 40 H 0.08 0.78 6.02 -2.39 -0.01 0.77 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.08 2.52 7.09 -2.39 -0.02 2.51 16 43 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 44 H 0.07 3.03 5.76 -2.39 -0.01 3.02 16 45 H 0.06 1.90 8.12 -2.39 -0.02 1.88 16 46 H 0.12 3.24 7.97 -2.39 -0.02 3.22 16 47 H 0.40 18.97 7.90 -92.71 -0.73 18.24 16 48 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 49 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 50 H 0.11 1.67 7.99 -2.39 -0.02 1.65 16 51 H 0.13 1.18 4.84 -2.39 -0.01 1.17 16 52 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 Total: -1.00 -71.43 386.60 0.50 -70.93 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: 0.19 Total: 34.89 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 6.08 Total: 16.68 kcal Atomic # 7 Polarization: -108.96 SS G_CDS: -7.72 Total: -116.68 kcal Atomic # 8 Polarization: -50.77 SS G_CDS: -0.08 Total: -50.85 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -71.43 0.50 -70.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113268037.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.848 kcal (2) G-P(sol) polarization free energy of solvation -71.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.780 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds