Wall clock time and date at job start Tue Mar 31 2020 21:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.45427 * 2 1 4 4 C 1.53037 * 109.46084 * 240.02518 * 2 1 3 5 5 C 1.53119 * 109.27586 * 180.80628 * 4 2 1 6 6 C 1.53119 * 109.21173 * 57.62583 * 5 4 2 7 7 H 1.09002 * 109.50359 * 182.43781 * 6 5 4 8 8 N 1.46503 * 109.50780 * 62.31569 * 6 5 4 9 9 C 1.34775 * 119.99852 * 84.99952 * 8 6 5 10 10 O 1.21286 * 119.99848 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00006 * 180.02562 * 9 8 6 12 12 C 1.54271 * 110.02711 * 297.16304 * 11 9 8 13 13 C 1.54892 * 104.19236 * 217.10306 * 12 11 9 14 14 C 1.54885 * 102.74794 * 37.94876 * 13 12 11 15 15 C 1.53870 * 110.03196 * 179.97438 * 11 9 8 16 16 C 1.53050 * 109.27594 * 302.43692 * 6 5 4 17 17 N 1.46842 * 109.45930 * 119.97442 * 2 1 3 18 18 C 1.46902 * 111.00318 * 305.85540 * 17 2 1 19 19 C 1.50695 * 109.47572 * 163.95550 * 18 17 2 20 20 O 1.21287 * 119.99961 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00253 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00442 * 179.97438 * 21 19 18 23 23 H 1.08008 * 119.99897 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00667 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99684 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00405 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46915 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47139 * 120.00235 * 26 24 22 29 29 H 1.48501 * 109.47088 * 240.00120 * 26 24 22 30 30 H 1.08992 * 109.47358 * 187.37462 * 1 2 3 31 31 H 1.09006 * 109.46899 * 307.38029 * 1 2 3 32 32 H 1.09000 * 109.47083 * 67.37522 * 1 2 3 33 33 H 1.08999 * 109.50207 * 60.86559 * 4 2 1 34 34 H 1.09001 * 109.53220 * 300.76565 * 4 2 1 35 35 H 1.09000 * 109.52119 * 177.55901 * 5 4 2 36 36 H 1.08999 * 109.52569 * 297.69008 * 5 4 2 37 37 H 0.97001 * 119.99921 * 264.99998 * 8 6 5 38 38 H 1.08999 * 110.01615 * 58.60450 * 11 9 8 39 39 H 1.08995 * 110.48662 * 335.78730 * 12 11 9 40 40 H 1.09003 * 110.48158 * 98.43060 * 12 11 9 41 41 H 1.08992 * 110.76122 * 279.62833 * 13 12 11 42 42 H 1.09002 * 110.90874 * 156.32935 * 13 12 11 43 43 H 1.08999 * 110.48497 * 203.37563 * 14 13 12 44 44 H 1.08998 * 110.49210 * 80.73031 * 14 13 12 45 45 H 1.09002 * 110.03050 * 238.56536 * 15 11 9 46 46 H 1.09003 * 110.03572 * 359.97438 * 15 11 9 47 47 H 1.08993 * 109.40890 * 299.07079 * 16 6 5 48 48 H 1.09001 * 109.45502 * 179.12832 * 16 6 5 49 49 H 1.09004 * 109.46797 * 283.95489 * 18 17 2 50 50 H 1.09000 * 109.46947 * 43.94923 * 18 17 2 51 51 H 0.96998 * 119.99791 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00023 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 6 4.0560 -1.4180 0.0467 7 1 5.1452 -1.3929 0.0826 8 7 3.5972 -2.8092 0.0647 9 6 4.3149 -3.7636 -0.5601 10 8 5.3404 -3.4706 -1.1377 11 6 3.8426 -5.1946 -0.5422 12 6 3.8185 -5.7248 0.9063 13 6 4.2756 -7.1992 0.7786 14 6 5.3682 -7.1247 -0.3167 15 6 4.8276 -6.0845 -1.3203 16 6 3.4864 -0.6777 1.2592 17 7 2.0192 -0.6917 1.1994 18 6 1.4372 -0.1106 2.4166 19 6 1.6330 -1.0604 3.5700 20 8 2.2010 -2.1177 3.3953 21 7 1.1760 -0.7355 4.7956 22 6 1.3536 -1.5998 5.8449 23 1 1.8595 -2.5413 5.6893 24 6 0.8830 -1.2647 7.1085 25 7 0.2671 -0.1193 7.2978 26 14 1.1244 -2.4426 8.5380 27 1 1.8411 -3.6543 8.0652 28 1 1.9237 -1.7773 9.5981 29 1 -0.1991 -2.8324 9.0871 30 1 -0.3634 -1.0191 0.1319 31 1 -0.3633 0.6239 0.8167 32 1 -0.3633 0.3953 -0.9486 33 1 1.6895 -0.1982 -2.1399 34 1 1.6659 -1.7447 -1.2582 35 1 3.9379 -1.2864 -2.1019 36 1 3.9457 0.2869 -1.2682 37 1 2.7768 -3.0434 0.5263 38 1 2.8482 -5.2648 -0.9829 39 1 4.5134 -5.1626 1.5300 40 1 2.8094 -5.6723 1.3150 41 1 3.4494 -7.8334 0.4576 42 1 4.6946 -7.5594 1.7182 43 1 5.4900 -8.0938 -0.8005 44 1 6.3134 -6.7885 0.1094 45 1 4.3108 -6.5873 -2.1378 46 1 5.6470 -5.4813 -1.7113 47 1 3.8403 0.3531 1.2533 48 1 3.8174 -1.1701 2.1736 49 1 1.9294 0.8364 2.6382 50 1 0.3717 0.0607 2.2637 51 1 0.7214 0.1099 4.9353 52 1 -0.0619 0.1145 8.1798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001131731237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:05 Heat of formation + Delta-G solvation = -89.078725 kcal Electronic energy + Delta-G solvation = -31008.688186 eV Core-core repulsion = 27006.893324 eV Total energy + Delta-G solvation = -4001.794861 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.37238 -39.23286 -37.77852 -36.86304 -34.67950 -33.95226 -32.54880 -31.43137 -31.19405 -29.06099 -28.58974 -27.69842 -26.41948 -24.62129 -22.98235 -22.41691 -21.03886 -20.69151 -19.50168 -19.23461 -19.00206 -17.86977 -17.34276 -16.26908 -15.94039 -15.72240 -15.37120 -15.02167 -14.80600 -14.58367 -14.30309 -14.11364 -13.89776 -13.69484 -13.43817 -13.35344 -13.09610 -12.85278 -12.80564 -12.11983 -11.96152 -11.83265 -11.70705 -11.57037 -11.51750 -11.39941 -11.24390 -11.12357 -11.08727 -11.06293 -10.77400 -10.73219 -10.55139 -10.50538 -10.36340 -10.25021 -10.07871 -9.51594 -9.49874 -8.81497 -8.45763 -7.98772 -7.89911 -6.43369 -3.83989 2.86192 3.14594 3.25473 3.31958 3.42486 3.88096 3.92937 4.21423 4.49726 4.61030 4.76325 4.79983 4.82039 4.97413 5.01718 5.20065 5.23112 5.26278 5.36244 5.40274 5.44343 5.44954 5.49867 5.55562 5.60650 5.63583 5.64977 5.67422 5.79780 5.84837 5.88572 5.93259 5.93845 5.94911 6.02414 6.07402 6.11461 6.19014 6.20371 6.24316 6.31436 6.32188 6.34332 6.40336 6.78728 7.22472 7.36600 7.53661 7.88318 8.05086 8.50251 8.60268 9.16937 9.53590 10.04902 10.74493 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.003663 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.762528 B = 7642.408049 C =10051.565957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.079 3.921 3 H 0.037 0.963 4 C -0.106 4.106 5 C -0.132 4.132 6 C 0.154 3.846 7 H 0.086 0.914 8 N -0.702 5.702 9 C 0.518 3.482 10 O -0.556 6.556 11 C -0.112 4.112 12 C -0.114 4.114 13 C -0.124 4.124 14 C -0.124 4.124 15 C -0.118 4.118 16 C 0.047 3.953 17 N -0.509 5.509 18 C 0.039 3.961 19 C 0.445 3.555 20 O -0.577 6.577 21 N -0.566 5.566 22 C -0.296 4.296 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.927 3.073 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.067 0.933 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.066 0.934 37 H 0.416 0.584 38 H 0.094 0.906 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.063 0.937 44 H 0.065 0.935 45 H 0.063 0.937 46 H 0.088 0.912 47 H 0.038 0.962 48 H 0.102 0.898 49 H 0.047 0.953 50 H 0.095 0.905 51 H 0.391 0.609 52 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.684 -3.356 -16.310 16.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.029 4.029 3 H 0.055 0.945 4 C -0.144 4.144 5 C -0.171 4.171 6 C 0.049 3.951 7 H 0.104 0.896 8 N -0.353 5.353 9 C 0.304 3.696 10 O -0.436 6.436 11 C -0.134 4.134 12 C -0.152 4.152 13 C -0.161 4.161 14 C -0.161 4.161 15 C -0.155 4.155 16 C -0.081 4.081 17 N -0.234 5.234 18 C -0.092 4.092 19 C 0.230 3.770 20 O -0.461 6.461 21 N -0.203 5.203 22 C -0.426 4.426 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.755 3.245 27 H -0.193 1.193 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.086 0.914 36 H 0.084 0.916 37 H 0.253 0.747 38 H 0.112 0.888 39 H 0.091 0.909 40 H 0.096 0.904 41 H 0.086 0.914 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.084 0.916 45 H 0.082 0.918 46 H 0.106 0.894 47 H 0.056 0.944 48 H 0.120 0.880 49 H 0.065 0.935 50 H 0.113 0.887 51 H 0.224 0.776 52 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.552 -4.250 -16.679 17.575 hybrid contribution -0.484 0.941 1.240 1.630 sum 3.068 -3.309 -15.440 16.086 Atomic orbital electron populations 1.21940 0.94417 1.02942 1.01369 1.21664 0.95393 0.95263 0.90621 0.94462 1.21566 0.95177 1.01448 0.96238 1.21983 0.96176 1.00518 0.98404 1.20894 0.98848 0.81282 0.94115 0.89647 1.45949 1.27991 1.06825 1.54537 1.20574 0.83657 0.87501 0.77863 1.90615 1.25048 1.82921 1.44977 1.21919 1.00932 0.92050 0.98483 1.22338 1.02764 0.95938 0.94118 1.22497 0.98375 0.96348 0.98917 1.22369 0.98697 0.98584 0.96483 1.22155 0.99260 0.96612 0.97510 1.22453 0.87578 0.98464 0.99579 1.61457 1.06695 1.54597 1.00684 1.21973 1.01033 0.95896 0.90274 1.19748 0.84929 0.88672 0.83612 1.90482 1.46353 1.25489 1.83745 1.41878 1.51405 1.20064 1.06919 1.19721 1.35066 1.01301 0.86518 0.87892 1.25243 0.96814 0.97013 0.98886 1.69618 1.38810 1.21877 1.24083 0.85830 0.77989 0.80116 0.80589 1.19251 1.20821 1.20777 0.91428 0.92340 0.92412 0.91849 0.91074 0.91435 0.91581 0.74683 0.88787 0.90894 0.90442 0.91448 0.91380 0.91828 0.91643 0.91841 0.89373 0.94377 0.88015 0.93499 0.88736 0.77605 0.91967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.57 37.16 0.32 -1.30 16 2 C 0.08 0.94 2.44 -67.72 -0.17 0.77 16 3 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.11 -1.17 5.20 -26.65 -0.14 -1.31 16 5 C -0.13 -1.56 5.67 -26.61 -0.15 -1.71 16 6 C 0.15 2.12 2.81 -67.84 -0.19 1.93 16 7 H 0.09 1.27 7.58 -51.93 -0.39 0.87 16 8 N -0.70 -9.90 4.36 -53.72 -0.23 -10.13 16 9 C 0.52 7.50 6.96 -10.99 -0.08 7.42 16 10 O -0.56 -9.59 14.88 5.55 0.08 -9.50 16 11 C -0.11 -1.34 3.30 -90.65 -0.30 -1.64 16 12 C -0.11 -1.38 6.31 -25.07 -0.16 -1.54 16 13 C -0.12 -1.28 6.91 -24.74 -0.17 -1.45 16 14 C -0.12 -1.27 6.83 -25.04 -0.17 -1.44 16 15 C -0.12 -1.32 6.40 -25.58 -0.16 -1.48 16 16 C 0.05 0.71 4.70 -3.83 -0.02 0.69 16 17 N -0.51 -7.47 3.60 -228.12 -0.82 -8.29 16 18 C 0.04 0.65 5.26 -4.98 -0.03 0.62 16 19 C 0.45 9.75 7.47 -10.99 -0.08 9.67 16 20 O -0.58 -14.12 14.42 5.55 0.08 -14.04 16 21 N -0.57 -13.69 5.29 -10.97 -0.06 -13.75 16 22 C -0.30 -7.98 9.68 -14.94 -0.14 -8.12 16 23 H 0.10 2.91 7.16 -52.48 -0.38 2.54 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.10 13.05 55.50 0.72 -23.37 16 26 Si 0.93 20.67 29.55 -169.99 -5.02 15.65 16 27 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 28 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 29 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.06 0.64 6.43 -51.93 -0.33 0.30 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.84 7.73 -51.93 -0.40 0.44 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.42 6.17 8.17 -40.82 -0.33 5.83 16 38 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.07 1.02 7.85 -51.93 -0.41 0.61 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.09 1.16 6.39 -51.93 -0.33 0.83 16 47 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.10 1.86 6.35 -51.93 -0.33 1.53 16 49 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 50 H 0.09 1.42 5.55 -51.93 -0.29 1.13 16 51 H 0.39 9.16 7.90 -40.82 -0.32 8.83 16 52 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 401.93 15.07 6.06 6.06 Total: -1.00 -29.69 401.93 -9.92 -39.60 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -8.99 Total: 16.20 kcal Atomic # 6 Polarization: 3.32 SS G_CDS: -1.73 Total: 1.59 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.39 Total: -55.54 kcal Atomic # 8 Polarization: -23.71 SS G_CDS: 0.16 Total: -23.55 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -29.69 -9.92 -39.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131731237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.475 kcal (2) G-P(sol) polarization free energy of solvation -29.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds