Wall clock time and date at job start Tue Mar 31 2020 21:25:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.45427 * 2 1 4 4 C 1.53037 * 109.46084 * 240.02518 * 2 1 3 5 5 C 1.53119 * 109.27586 * 180.80628 * 4 2 1 6 6 C 1.53119 * 109.21173 * 57.62583 * 5 4 2 7 7 H 1.09002 * 109.50359 * 182.43781 * 6 5 4 8 8 N 1.46503 * 109.50780 * 62.31569 * 6 5 4 9 9 C 1.34775 * 119.99852 * 84.99952 * 8 6 5 10 10 O 1.21286 * 119.99848 * 359.97438 * 9 8 6 11 11 C 1.50700 * 120.00006 * 180.02562 * 9 8 6 12 12 C 1.54271 * 110.02711 * 297.16304 * 11 9 8 13 13 C 1.54892 * 104.19236 * 217.10306 * 12 11 9 14 14 C 1.54885 * 102.74794 * 37.94876 * 13 12 11 15 15 C 1.53870 * 110.03196 * 179.97438 * 11 9 8 16 16 C 1.53050 * 109.27594 * 302.43692 * 6 5 4 17 17 N 1.46842 * 109.45930 * 119.97442 * 2 1 3 18 18 C 1.46902 * 111.00318 * 305.85540 * 17 2 1 19 19 C 1.50695 * 109.47572 * 163.95550 * 18 17 2 20 20 O 1.21287 * 119.99961 * 359.97438 * 19 18 17 21 21 N 1.34777 * 120.00253 * 180.02562 * 19 18 17 22 22 C 1.37096 * 120.00442 * 179.97438 * 21 19 18 23 23 H 1.08008 * 119.99897 * 359.97438 * 22 21 19 24 24 C 1.38945 * 120.00667 * 179.97438 * 22 21 19 25 25 N 1.31414 * 119.99684 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00405 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46915 * 0.02562 * 26 24 22 28 28 H 1.48504 * 109.47139 * 120.00235 * 26 24 22 29 29 H 1.48501 * 109.47088 * 240.00120 * 26 24 22 30 30 H 1.08992 * 109.47358 * 187.37462 * 1 2 3 31 31 H 1.09006 * 109.46899 * 307.38029 * 1 2 3 32 32 H 1.09000 * 109.47083 * 67.37522 * 1 2 3 33 33 H 1.08999 * 109.50207 * 60.86559 * 4 2 1 34 34 H 1.09001 * 109.53220 * 300.76565 * 4 2 1 35 35 H 1.09000 * 109.52119 * 177.55901 * 5 4 2 36 36 H 1.08999 * 109.52569 * 297.69008 * 5 4 2 37 37 H 0.97001 * 119.99921 * 264.99998 * 8 6 5 38 38 H 1.08999 * 110.01615 * 58.60450 * 11 9 8 39 39 H 1.08995 * 110.48662 * 335.78730 * 12 11 9 40 40 H 1.09003 * 110.48158 * 98.43060 * 12 11 9 41 41 H 1.08992 * 110.76122 * 279.62833 * 13 12 11 42 42 H 1.09002 * 110.90874 * 156.32935 * 13 12 11 43 43 H 1.08999 * 110.48497 * 203.37563 * 14 13 12 44 44 H 1.08998 * 110.49210 * 80.73031 * 14 13 12 45 45 H 1.09002 * 110.03050 * 238.56536 * 15 11 9 46 46 H 1.09003 * 110.03572 * 359.97438 * 15 11 9 47 47 H 1.08993 * 109.40890 * 299.07079 * 16 6 5 48 48 H 1.09001 * 109.45502 * 179.12832 * 16 6 5 49 49 H 1.09004 * 109.46797 * 283.95489 * 18 17 2 50 50 H 1.09000 * 109.46947 * 43.94923 * 18 17 2 51 51 H 0.96998 * 119.99791 * 359.97438 * 21 19 18 52 52 H 0.97000 * 120.00023 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5709 -0.7361 -1.2355 6 6 4.0560 -1.4180 0.0467 7 1 5.1452 -1.3929 0.0826 8 7 3.5972 -2.8092 0.0647 9 6 4.3149 -3.7636 -0.5601 10 8 5.3404 -3.4706 -1.1377 11 6 3.8426 -5.1946 -0.5422 12 6 3.8185 -5.7248 0.9063 13 6 4.2756 -7.1992 0.7786 14 6 5.3682 -7.1247 -0.3167 15 6 4.8276 -6.0845 -1.3203 16 6 3.4864 -0.6777 1.2592 17 7 2.0192 -0.6917 1.1994 18 6 1.4372 -0.1106 2.4166 19 6 1.6330 -1.0604 3.5700 20 8 2.2010 -2.1177 3.3953 21 7 1.1760 -0.7355 4.7956 22 6 1.3536 -1.5998 5.8449 23 1 1.8595 -2.5413 5.6893 24 6 0.8830 -1.2647 7.1085 25 7 0.2671 -0.1193 7.2978 26 14 1.1244 -2.4426 8.5380 27 1 1.8411 -3.6543 8.0652 28 1 1.9237 -1.7773 9.5981 29 1 -0.1991 -2.8324 9.0871 30 1 -0.3634 -1.0191 0.1319 31 1 -0.3633 0.6239 0.8167 32 1 -0.3633 0.3953 -0.9486 33 1 1.6895 -0.1982 -2.1399 34 1 1.6659 -1.7447 -1.2582 35 1 3.9379 -1.2864 -2.1019 36 1 3.9457 0.2869 -1.2682 37 1 2.7768 -3.0434 0.5263 38 1 2.8482 -5.2648 -0.9829 39 1 4.5134 -5.1626 1.5300 40 1 2.8094 -5.6723 1.3150 41 1 3.4494 -7.8334 0.4576 42 1 4.6946 -7.5594 1.7182 43 1 5.4900 -8.0938 -0.8005 44 1 6.3134 -6.7885 0.1094 45 1 4.3108 -6.5873 -2.1378 46 1 5.6470 -5.4813 -1.7113 47 1 3.8403 0.3531 1.2533 48 1 3.8174 -1.1701 2.1736 49 1 1.9294 0.8364 2.6382 50 1 0.3717 0.0607 2.2637 51 1 0.7214 0.1099 4.9353 52 1 -0.0619 0.1145 8.1798 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001131731237.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:25:04 Heat of formation + Delta-G solvation = -107.977037 kcal Electronic energy + Delta-G solvation = -31009.507678 eV Core-core repulsion = 27006.893324 eV Total energy + Delta-G solvation = -4002.614354 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.52423 -40.51380 -39.34223 -37.91766 -36.01119 -35.71862 -33.71050 -33.17710 -32.46740 -30.00084 -29.51758 -29.09722 -27.54592 -26.34892 -24.20725 -23.47908 -22.11654 -21.58593 -20.90995 -20.52087 -20.16069 -19.78901 -18.43660 -17.74455 -17.18107 -16.89601 -16.51983 -16.46380 -16.15168 -15.83839 -15.66361 -15.55628 -15.16620 -14.97701 -14.74725 -14.37907 -14.28266 -13.99656 -13.92335 -13.67246 -13.41179 -13.09051 -12.86418 -12.85162 -12.68549 -12.61668 -12.41069 -12.36194 -12.19315 -12.11301 -12.01664 -11.95090 -11.75739 -11.68769 -11.66279 -11.40738 -11.39985 -11.12433 -10.69221 -10.25134 -9.95486 -9.90421 -9.17267 -8.42853 -5.90049 1.37416 1.42690 1.55866 1.69635 2.13228 2.28269 2.32706 2.75300 3.24898 3.43486 3.55769 3.66968 3.72040 3.82072 3.87962 4.00235 4.09100 4.25174 4.35458 4.41028 4.44543 4.46888 4.47202 4.53101 4.54438 4.56183 4.60113 4.66393 4.69228 4.79239 4.84192 4.90444 4.98887 5.00838 5.02614 5.07132 5.07843 5.21681 5.23321 5.24789 5.31332 5.38144 5.44450 5.45527 5.45966 5.65391 5.92885 6.11191 6.27597 6.65665 6.69779 7.18762 7.32712 7.63904 8.19520 8.74963 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009285 B = 0.003663 C = 0.002785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3014.762528 B = 7642.408049 C =10051.565957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.079 3.921 3 H 0.050 0.950 4 C -0.100 4.100 5 C -0.123 4.123 6 C 0.154 3.846 7 H 0.069 0.931 8 N -0.699 5.699 9 C 0.514 3.486 10 O -0.587 6.587 11 C -0.109 4.109 12 C -0.114 4.114 13 C -0.119 4.119 14 C -0.121 4.121 15 C -0.115 4.115 16 C 0.055 3.945 17 N -0.518 5.518 18 C 0.052 3.948 19 C 0.445 3.555 20 O -0.605 6.605 21 N -0.579 5.579 22 C -0.324 4.324 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.923 5.923 26 Si 0.988 3.012 27 H -0.273 1.273 28 H -0.275 1.275 29 H -0.272 1.272 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.081 0.919 37 H 0.413 0.587 38 H 0.115 0.885 39 H 0.044 0.956 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.069 0.931 43 H 0.085 0.915 44 H 0.052 0.948 45 H 0.085 0.915 46 H 0.065 0.935 47 H 0.053 0.947 48 H 0.061 0.939 49 H 0.063 0.937 50 H 0.115 0.885 51 H 0.394 0.606 52 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.542 -3.285 -17.645 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.028 4.028 3 H 0.068 0.932 4 C -0.137 4.137 5 C -0.162 4.162 6 C 0.048 3.952 7 H 0.087 0.913 8 N -0.349 5.349 9 C 0.301 3.699 10 O -0.469 6.469 11 C -0.130 4.130 12 C -0.152 4.152 13 C -0.156 4.156 14 C -0.159 4.159 15 C -0.153 4.153 16 C -0.073 4.073 17 N -0.244 5.244 18 C -0.079 4.079 19 C 0.233 3.767 20 O -0.490 6.490 21 N -0.217 5.217 22 C -0.453 4.453 23 H 0.097 0.903 24 C -0.213 4.213 25 N -0.565 5.565 26 Si 0.812 3.188 27 H -0.198 1.198 28 H -0.200 1.200 29 H -0.197 1.197 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.100 0.900 33 H 0.108 0.892 34 H 0.080 0.920 35 H 0.078 0.922 36 H 0.100 0.900 37 H 0.249 0.751 38 H 0.133 0.867 39 H 0.063 0.937 40 H 0.093 0.907 41 H 0.104 0.896 42 H 0.087 0.913 43 H 0.104 0.896 44 H 0.071 0.929 45 H 0.103 0.897 46 H 0.084 0.916 47 H 0.071 0.929 48 H 0.080 0.920 49 H 0.081 0.919 50 H 0.133 0.867 51 H 0.227 0.773 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.398 -4.160 -18.029 18.657 hybrid contribution -0.090 0.934 1.603 1.858 sum 2.307 -3.226 -16.425 16.897 Atomic orbital electron populations 1.21926 0.93321 1.02358 1.02773 1.21787 0.96207 0.95609 0.89227 0.93191 1.21545 0.94152 1.01242 0.96803 1.21906 0.96980 1.00868 0.96429 1.20894 0.97943 0.81340 0.94980 0.91253 1.45986 1.27665 1.07148 1.54140 1.21048 0.83133 0.88523 0.77167 1.90597 1.26304 1.83562 1.46405 1.21984 1.02155 0.90323 0.98539 1.22299 1.01872 0.97206 0.93809 1.22500 0.98975 0.94985 0.99160 1.22364 0.97959 0.99317 0.96239 1.22148 0.98502 0.96458 0.98211 1.22271 0.88046 0.98856 0.98156 1.61403 1.06326 1.55566 1.01080 1.21827 1.02649 0.94628 0.88784 1.20759 0.82844 0.88941 0.84200 1.90468 1.47019 1.27189 1.84359 1.41943 1.52452 1.19989 1.07320 1.19648 1.36225 1.01348 0.88126 0.90287 1.25948 0.96272 0.98480 1.00640 1.69678 1.39147 1.22835 1.24835 0.84941 0.78182 0.78002 0.77665 1.19812 1.20009 1.19749 0.92663 0.92324 0.89972 0.89250 0.91988 0.92204 0.90009 0.75052 0.86741 0.93692 0.90704 0.89566 0.91273 0.89598 0.92937 0.89650 0.91623 0.92946 0.92037 0.91947 0.86673 0.77287 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.74 8.57 71.98 0.62 -2.13 16 2 C 0.08 1.67 2.44 44.94 0.11 1.78 16 3 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 4 C -0.10 -1.94 5.20 30.65 0.16 -1.78 16 5 C -0.12 -2.73 5.67 30.67 0.17 -2.56 16 6 C 0.15 4.28 2.81 45.05 0.13 4.41 16 7 H 0.07 2.14 7.58 -2.39 -0.02 2.13 16 8 N -0.70 -20.22 4.36 -442.25 -1.93 -22.15 16 9 C 0.51 15.25 6.96 87.66 0.61 15.86 16 10 O -0.59 -20.87 14.88 -3.05 -0.05 -20.91 16 11 C -0.11 -2.57 3.30 -10.82 -0.04 -2.60 16 12 C -0.11 -2.81 6.31 31.67 0.20 -2.61 16 13 C -0.12 -2.33 6.91 31.88 0.22 -2.11 16 14 C -0.12 -2.35 6.83 31.69 0.22 -2.14 16 15 C -0.12 -2.49 6.40 31.34 0.20 -2.29 16 16 C 0.06 1.65 4.70 86.33 0.41 2.05 16 17 N -0.52 -14.69 3.60 -875.63 -3.15 -17.84 16 18 C 0.05 1.66 5.26 85.55 0.45 2.11 16 19 C 0.45 19.83 7.47 87.66 0.65 20.49 16 20 O -0.61 -30.68 14.42 -3.05 -0.04 -30.73 16 21 N -0.58 -28.58 5.29 -306.99 -1.62 -30.20 16 22 C -0.32 -17.88 9.68 84.04 0.81 -17.07 16 23 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 24 C -0.01 -0.75 5.50 84.92 0.47 -0.28 16 25 N -0.92 -49.30 13.05 21.66 0.28 -49.01 16 26 Si 0.99 42.59 29.55 68.60 2.03 44.62 16 27 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 28 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 29 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 30 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.10 6.43 -2.38 -0.02 1.09 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.06 1.34 7.73 -2.39 -0.02 1.33 16 35 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.41 12.55 8.17 -92.71 -0.76 11.79 16 38 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.04 1.34 7.85 -2.39 -0.02 1.32 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.05 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.07 1.75 6.39 -2.39 -0.02 1.73 16 47 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.06 2.35 6.35 -2.39 -0.02 2.33 16 49 H 0.06 1.83 8.05 -2.38 -0.02 1.81 16 50 H 0.12 3.24 5.55 -2.39 -0.01 3.23 16 51 H 0.39 18.66 7.90 -92.71 -0.73 17.93 16 52 H 0.28 13.80 8.31 -92.71 -0.77 13.03 16 Total: -1.00 -66.02 401.93 0.34 -65.68 By element: Atomic # 1 Polarization: 49.97 SS G_CDS: -0.57 Total: 49.41 kcal Atomic # 6 Polarization: 5.74 SS G_CDS: 5.39 Total: 11.13 kcal Atomic # 7 Polarization: -112.78 SS G_CDS: -6.42 Total: -119.20 kcal Atomic # 8 Polarization: -51.55 SS G_CDS: -0.09 Total: -51.64 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -66.02 0.34 -65.68 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001131731237.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.293 kcal (2) G-P(sol) polarization free energy of solvation -66.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds