Wall clock time and date at job start Tue Mar 31 2020 21:30:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58405 * 2 1 4 4 C 1.53197 * 109.58433 * 120.27986 * 2 1 3 5 5 C 1.53073 * 109.28967 * 174.28077 * 4 2 1 6 6 C 1.53040 * 109.66024 * 298.84662 * 5 4 2 7 7 H 1.08998 * 109.49854 * 301.34775 * 6 5 4 8 8 N 1.46504 * 109.52053 * 181.27197 * 6 5 4 9 9 C 1.34782 * 119.99884 * 155.15232 * 8 6 5 10 10 O 1.21278 * 119.99672 * 359.97438 * 9 8 6 11 11 C 1.50697 * 119.99844 * 179.97438 * 9 8 6 12 12 N 1.46497 * 109.46970 * 179.97438 * 11 9 8 13 13 C 1.34781 * 119.99993 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00054 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99917 * 180.02562 * 13 12 11 16 16 C 1.54276 * 110.02973 * 297.90556 * 15 13 12 17 17 C 1.54959 * 104.15901 * 217.14263 * 16 15 13 18 18 C 1.54889 * 102.78411 * 37.88547 * 17 16 15 19 19 C 1.53869 * 110.03285 * 180.69174 * 15 13 12 20 20 C 1.53190 * 109.30905 * 61.30840 * 6 5 4 21 21 N 1.46922 * 109.59004 * 239.71560 * 2 1 3 22 22 C 1.36938 * 120.62907 * 6.58607 * 21 2 1 23 23 H 1.08007 * 119.99809 * 330.15256 * 22 21 2 24 24 C 1.38812 * 120.00272 * 150.16239 * 22 21 2 25 25 N 1.31625 * 119.99667 * 344.50109 * 24 22 21 26 26 Si 1.86795 * 120.00181 * 164.50719 * 24 22 21 27 27 H 1.48502 * 109.47234 * 59.99768 * 26 24 22 28 28 H 1.48499 * 109.47170 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47439 * 299.99570 * 26 24 22 30 30 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47148 * 60.00365 * 1 2 3 32 32 H 1.09002 * 109.47302 * 299.99679 * 1 2 3 33 33 H 1.08997 * 109.49974 * 294.37846 * 4 2 1 34 34 H 1.09001 * 109.49351 * 54.47612 * 4 2 1 35 35 H 1.09009 * 109.44944 * 178.76165 * 5 4 2 36 36 H 1.08996 * 109.34006 * 58.87261 * 5 4 2 37 37 H 0.97000 * 120.00308 * 335.14097 * 8 6 5 38 38 H 1.08998 * 109.47458 * 299.99698 * 11 9 8 39 39 H 1.09002 * 109.47318 * 59.99998 * 11 9 8 40 40 H 0.97003 * 120.00486 * 0.02562 * 12 11 9 41 41 H 1.08991 * 110.01964 * 59.29517 * 15 13 12 42 42 H 1.09002 * 110.48235 * 335.78658 * 16 15 13 43 43 H 1.08997 * 110.48493 * 98.42481 * 16 15 13 44 44 H 1.09004 * 110.71760 * 279.57388 * 17 16 15 45 45 H 1.08998 * 110.92565 * 156.29827 * 17 16 15 46 46 H 1.08996 * 110.49057 * 203.41285 * 18 17 16 47 47 H 1.08992 * 110.48729 * 80.75898 * 18 17 16 48 48 H 1.08995 * 110.03510 * 238.56477 * 19 15 13 49 49 H 1.09006 * 110.03340 * 359.97438 * 19 15 13 50 50 H 1.09000 * 109.58297 * 185.57615 * 20 6 5 51 51 H 1.08998 * 109.70909 * 65.22211 * 20 6 5 52 52 H 0.96999 * 119.99631 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8493 1.1691 6 6 3.9569 -1.6656 -0.0655 7 1 3.4984 -2.6528 -0.0084 8 7 5.4142 -1.8058 -0.1199 9 6 5.9671 -2.8464 -0.7742 10 8 5.2582 -3.6669 -1.3174 11 6 7.4661 -2.9903 -0.8307 12 7 7.8129 -4.1924 -1.5928 13 6 9.1062 -4.5253 -1.7746 14 8 9.9830 -3.8299 -1.3070 15 6 9.4629 -5.7616 -2.5591 16 6 8.9027 -7.0145 -1.8544 17 6 9.9953 -8.0917 -2.0710 18 6 11.3079 -7.2810 -1.9332 19 6 10.9914 -5.9311 -2.6096 20 6 3.4651 -0.9452 -1.3248 21 7 2.0226 -0.6980 -1.1953 22 6 1.1538 -1.1107 -2.1699 23 1 0.1399 -1.3786 -1.9114 24 6 1.5760 -1.1849 -3.4902 25 7 2.6866 -0.5833 -3.8607 26 14 0.5682 -2.1383 -4.7410 27 1 -0.7925 -1.5505 -4.8320 28 1 1.2288 -2.0643 -6.0689 29 1 0.4668 -3.5578 -4.3166 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.7659 -0.1641 2.1371 34 1 1.6030 -1.7237 1.2935 35 1 3.9378 -1.3474 2.0653 36 1 4.0059 0.1461 1.0995 37 1 5.9812 -1.1497 0.3147 38 1 7.8972 -2.1149 -1.3164 39 1 7.8614 -3.0756 0.1815 40 1 7.1117 -4.7489 -1.9665 41 1 9.0615 -5.6909 -3.5699 42 1 8.7617 -6.8228 -0.7907 43 1 7.9643 -7.3236 -2.3149 44 1 9.9140 -8.5288 -3.0662 45 1 9.9368 -8.8651 -1.3051 46 1 12.1238 -7.7851 -2.4510 47 1 11.5559 -7.1322 -0.8823 48 1 11.3317 -5.9435 -3.6450 49 1 11.4753 -5.1188 -2.0671 50 1 3.6519 -1.5689 -2.1990 51 1 3.9902 0.0038 -1.4341 52 1 2.9818 -0.6354 -4.7832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132061699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:54 Heat of formation + Delta-G solvation = -73.016392 kcal Electronic energy + Delta-G solvation = -30025.557497 eV Core-core repulsion = 26024.459150 eV Total energy + Delta-G solvation = -4001.098346 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.42062 -39.47453 -37.76431 -37.16950 -34.72880 -34.27518 -32.84824 -31.03359 -30.01041 -29.78651 -28.89423 -27.49814 -25.77839 -24.83268 -22.37205 -22.06164 -20.98670 -20.77229 -20.20150 -19.75533 -19.23593 -17.85036 -16.68028 -16.43174 -16.18715 -15.87180 -15.63894 -15.27185 -15.01350 -14.74090 -14.21735 -13.86586 -13.81629 -13.75420 -13.52372 -13.39027 -13.06491 -12.85242 -12.47028 -12.41854 -11.92866 -11.90051 -11.57572 -11.47621 -11.36110 -11.33682 -11.14306 -11.02063 -10.92173 -10.74346 -10.71701 -10.57128 -10.43318 -10.29566 -10.00451 -9.89304 -9.85689 -9.49882 -9.47958 -9.22382 -8.63451 -8.43678 -6.62760 -5.76246 -3.21032 2.53211 2.82043 2.88547 3.40726 3.46800 3.48536 3.58231 4.23137 4.34379 4.51093 4.52191 4.79336 4.96897 5.12835 5.19938 5.23887 5.27158 5.30582 5.33793 5.34591 5.40324 5.41602 5.45912 5.54162 5.60730 5.64188 5.67912 5.83828 5.91270 5.93236 6.05019 6.07299 6.10480 6.24109 6.24515 6.30594 6.36752 6.42394 6.45624 6.59961 6.69646 6.84547 7.02467 7.10570 7.27282 7.43123 7.69144 7.75632 7.84938 8.12427 8.43448 8.49224 9.22571 9.86747 10.42377 11.31963 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002632 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.184443 B =10637.101843 C =11934.157557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.165 3.835 3 H 0.025 0.975 4 C -0.126 4.126 5 C -0.116 4.116 6 C 0.117 3.883 7 H 0.083 0.917 8 N -0.714 5.714 9 C 0.505 3.495 10 O -0.531 6.531 11 C 0.099 3.901 12 N -0.714 5.714 13 C 0.522 3.478 14 O -0.545 6.545 15 C -0.113 4.113 16 C -0.117 4.117 17 C -0.124 4.124 18 C -0.124 4.124 19 C -0.119 4.119 20 C 0.168 3.832 21 N -0.583 5.583 22 C -0.254 4.254 23 H 0.069 0.931 24 C 0.007 3.993 25 N -0.900 5.900 26 Si 0.901 3.099 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.060 0.940 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.414 0.586 41 H 0.101 0.899 42 H 0.070 0.930 43 H 0.076 0.924 44 H 0.069 0.931 45 H 0.068 0.932 46 H 0.066 0.934 47 H 0.066 0.934 48 H 0.067 0.933 49 H 0.090 0.910 50 H 0.092 0.908 51 H 0.018 0.982 52 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.870 -8.522 7.861 17.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.058 3.942 3 H 0.043 0.957 4 C -0.166 4.166 5 C -0.155 4.155 6 C 0.012 3.988 7 H 0.101 0.899 8 N -0.365 5.365 9 C 0.289 3.711 10 O -0.408 6.408 11 C -0.028 4.028 12 N -0.369 5.369 13 C 0.308 3.692 14 O -0.423 6.423 15 C -0.134 4.134 16 C -0.154 4.154 17 C -0.161 4.161 18 C -0.162 4.162 19 C -0.157 4.157 20 C 0.041 3.959 21 N -0.306 5.306 22 C -0.383 4.383 23 H 0.087 0.913 24 C -0.192 4.192 25 N -0.544 5.544 26 Si 0.731 3.269 27 H -0.209 1.209 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.229 0.771 38 H 0.115 0.885 39 H 0.112 0.888 40 H 0.252 0.748 41 H 0.119 0.881 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.088 0.912 45 H 0.087 0.913 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.086 0.914 49 H 0.108 0.892 50 H 0.111 0.889 51 H 0.036 0.964 52 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.996 -8.580 7.617 17.336 hybrid contribution -0.541 -0.238 -0.705 0.920 sum 12.455 -8.819 6.912 16.753 Atomic orbital electron populations 1.21802 0.95975 1.01397 1.00217 1.20493 0.93105 0.93576 0.87026 0.95747 1.22052 0.94244 1.01325 0.98969 1.21683 0.97481 0.99685 0.96612 1.22034 0.77376 1.00988 0.98440 0.89932 1.45995 1.08904 1.26585 1.54986 1.20351 0.89737 0.81981 0.78993 1.90736 1.62959 1.42263 1.44806 1.21080 0.93120 0.90139 0.98498 1.45735 1.08273 1.27231 1.55636 1.20595 0.81843 0.86595 0.80162 1.90657 1.47848 1.53257 1.50505 1.21947 0.98465 0.92845 1.00177 1.22388 0.98903 0.93316 1.00830 1.22513 0.94459 0.97283 1.01882 1.22366 0.97447 0.95417 1.00937 1.22167 0.93074 0.98874 1.01544 1.21059 0.83698 0.96888 0.94210 1.43999 1.02568 1.64842 1.19207 1.19084 0.95077 1.38225 0.85953 0.91299 1.25090 0.97819 0.99259 0.97060 1.69998 1.24102 1.43527 1.16785 0.86397 0.79477 0.80396 0.80649 1.20928 1.21685 1.20926 0.92809 0.91983 0.94337 0.92593 0.92102 0.93043 0.92204 0.77132 0.88463 0.88769 0.74836 0.88117 0.91098 0.90539 0.91207 0.91335 0.91550 0.91571 0.91411 0.89180 0.88934 0.96431 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 7.95 37.16 0.30 -2.22 16 2 C 0.16 3.30 3.49 -67.60 -0.24 3.06 16 3 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.13 -2.08 5.38 -26.59 -0.14 -2.22 16 5 C -0.12 -1.79 5.35 -26.67 -0.14 -1.94 16 6 C 0.12 2.16 2.61 -67.81 -0.18 1.98 16 7 H 0.08 1.75 7.58 -51.93 -0.39 1.35 16 8 N -0.71 -10.73 5.08 -53.69 -0.27 -11.00 16 9 C 0.50 8.02 7.86 -10.98 -0.09 7.93 16 10 O -0.53 -10.63 15.33 5.56 0.09 -10.54 16 11 C 0.10 1.26 6.15 -5.20 -0.03 1.22 16 12 N -0.71 -9.09 5.46 -61.47 -0.34 -9.43 16 13 C 0.52 6.63 7.00 -10.98 -0.08 6.55 16 14 O -0.55 -8.45 15.21 5.55 0.08 -8.37 16 15 C -0.11 -1.11 3.30 -90.65 -0.30 -1.41 16 16 C -0.12 -0.99 6.30 -25.03 -0.16 -1.15 16 17 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 18 C -0.12 -0.97 6.83 -25.07 -0.17 -1.14 16 19 C -0.12 -1.11 6.40 -25.61 -0.16 -1.27 16 20 C 0.17 3.95 4.86 -3.71 -0.02 3.94 16 21 N -0.58 -14.21 2.99 -164.77 -0.49 -14.70 16 22 C -0.25 -6.84 8.57 -15.06 -0.13 -6.97 16 23 H 0.07 1.81 6.24 -52.48 -0.33 1.48 16 24 C 0.01 0.19 4.94 -17.43 -0.09 0.10 16 25 N -0.90 -26.30 11.23 55.49 0.62 -25.68 16 26 Si 0.90 22.09 29.58 -169.99 -5.03 17.06 16 27 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 28 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 29 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 30 H 0.05 1.01 7.42 -51.93 -0.39 0.62 16 31 H 0.06 1.24 7.64 -51.93 -0.40 0.85 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.05 0.68 8.14 -51.92 -0.42 0.26 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.40 4.56 8.60 -40.82 -0.35 4.20 16 38 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 40 H 0.41 5.30 7.42 -40.82 -0.30 5.00 16 41 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.07 0.65 7.85 -51.93 -0.41 0.25 16 43 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 48 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.09 1.02 6.39 -51.93 -0.33 0.69 16 50 H 0.09 2.57 6.15 -51.93 -0.32 2.25 16 51 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 52 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 403.98 15.07 6.09 6.09 Total: -1.00 -32.82 403.98 -10.16 -42.98 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -9.12 Total: 8.20 kcal Atomic # 6 Polarization: 7.19 SS G_CDS: -1.79 Total: 5.39 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.48 Total: -60.81 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.17 Total: -18.91 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -32.82 -10.16 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132061699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.034 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds