Wall clock time and date at job start Tue Mar 31 2020 21:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09004 * 109.58405 * 2 1 4 4 C 1.53197 * 109.58433 * 120.27986 * 2 1 3 5 5 C 1.53073 * 109.28967 * 174.28077 * 4 2 1 6 6 C 1.53040 * 109.66024 * 298.84662 * 5 4 2 7 7 H 1.08998 * 109.49854 * 301.34775 * 6 5 4 8 8 N 1.46504 * 109.52053 * 181.27197 * 6 5 4 9 9 C 1.34782 * 119.99884 * 155.15232 * 8 6 5 10 10 O 1.21278 * 119.99672 * 359.97438 * 9 8 6 11 11 C 1.50697 * 119.99844 * 179.97438 * 9 8 6 12 12 N 1.46497 * 109.46970 * 179.97438 * 11 9 8 13 13 C 1.34781 * 119.99993 * 180.02562 * 12 11 9 14 14 O 1.21283 * 120.00054 * 0.02562 * 13 12 11 15 15 C 1.50701 * 119.99917 * 180.02562 * 13 12 11 16 16 C 1.54276 * 110.02973 * 297.90556 * 15 13 12 17 17 C 1.54959 * 104.15901 * 217.14263 * 16 15 13 18 18 C 1.54889 * 102.78411 * 37.88547 * 17 16 15 19 19 C 1.53869 * 110.03285 * 180.69174 * 15 13 12 20 20 C 1.53190 * 109.30905 * 61.30840 * 6 5 4 21 21 N 1.46922 * 109.59004 * 239.71560 * 2 1 3 22 22 C 1.36938 * 120.62907 * 6.58607 * 21 2 1 23 23 H 1.08007 * 119.99809 * 330.15256 * 22 21 2 24 24 C 1.38812 * 120.00272 * 150.16239 * 22 21 2 25 25 N 1.31625 * 119.99667 * 344.50109 * 24 22 21 26 26 Si 1.86795 * 120.00181 * 164.50719 * 24 22 21 27 27 H 1.48502 * 109.47234 * 59.99768 * 26 24 22 28 28 H 1.48499 * 109.47170 * 179.97438 * 26 24 22 29 29 H 1.48498 * 109.47439 * 299.99570 * 26 24 22 30 30 H 1.09003 * 109.46659 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47148 * 60.00365 * 1 2 3 32 32 H 1.09002 * 109.47302 * 299.99679 * 1 2 3 33 33 H 1.08997 * 109.49974 * 294.37846 * 4 2 1 34 34 H 1.09001 * 109.49351 * 54.47612 * 4 2 1 35 35 H 1.09009 * 109.44944 * 178.76165 * 5 4 2 36 36 H 1.08996 * 109.34006 * 58.87261 * 5 4 2 37 37 H 0.97000 * 120.00308 * 335.14097 * 8 6 5 38 38 H 1.08998 * 109.47458 * 299.99698 * 11 9 8 39 39 H 1.09002 * 109.47318 * 59.99998 * 11 9 8 40 40 H 0.97003 * 120.00486 * 0.02562 * 12 11 9 41 41 H 1.08991 * 110.01964 * 59.29517 * 15 13 12 42 42 H 1.09002 * 110.48235 * 335.78658 * 16 15 13 43 43 H 1.08997 * 110.48493 * 98.42481 * 16 15 13 44 44 H 1.09004 * 110.71760 * 279.57388 * 17 16 15 45 45 H 1.08998 * 110.92565 * 156.29827 * 17 16 15 46 46 H 1.08996 * 110.49057 * 203.41285 * 18 17 16 47 47 H 1.08992 * 110.48729 * 80.75898 * 18 17 16 48 48 H 1.08995 * 110.03510 * 238.56477 * 19 15 13 49 49 H 1.09006 * 110.03340 * 359.97438 * 19 15 13 50 50 H 1.09000 * 109.58297 * 185.57615 * 20 6 5 51 51 H 1.08998 * 109.70909 * 65.22211 * 20 6 5 52 52 H 0.96999 * 119.99631 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8954 1.0270 0.0000 4 6 2.0435 -0.7278 1.2464 5 6 3.5675 -0.8493 1.1691 6 6 3.9569 -1.6656 -0.0655 7 1 3.4984 -2.6528 -0.0084 8 7 5.4142 -1.8058 -0.1199 9 6 5.9671 -2.8464 -0.7742 10 8 5.2582 -3.6669 -1.3174 11 6 7.4661 -2.9903 -0.8307 12 7 7.8129 -4.1924 -1.5928 13 6 9.1062 -4.5253 -1.7746 14 8 9.9830 -3.8299 -1.3070 15 6 9.4629 -5.7616 -2.5591 16 6 8.9027 -7.0145 -1.8544 17 6 9.9953 -8.0917 -2.0710 18 6 11.3079 -7.2810 -1.9332 19 6 10.9914 -5.9311 -2.6096 20 6 3.4651 -0.9452 -1.3248 21 7 2.0226 -0.6980 -1.1953 22 6 1.1538 -1.1107 -2.1699 23 1 0.1399 -1.3786 -1.9114 24 6 1.5760 -1.1849 -3.4902 25 7 2.6866 -0.5833 -3.8607 26 14 0.5682 -2.1383 -4.7410 27 1 -0.7925 -1.5505 -4.8320 28 1 1.2288 -2.0643 -6.0689 29 1 0.4668 -3.5578 -4.3166 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 0.5138 0.8900 33 1 1.7659 -0.1641 2.1371 34 1 1.6030 -1.7237 1.2935 35 1 3.9378 -1.3474 2.0653 36 1 4.0059 0.1461 1.0995 37 1 5.9812 -1.1497 0.3147 38 1 7.8972 -2.1149 -1.3164 39 1 7.8614 -3.0756 0.1815 40 1 7.1117 -4.7489 -1.9665 41 1 9.0615 -5.6909 -3.5699 42 1 8.7617 -6.8228 -0.7907 43 1 7.9643 -7.3236 -2.3149 44 1 9.9140 -8.5288 -3.0662 45 1 9.9368 -8.8651 -1.3051 46 1 12.1238 -7.7851 -2.4510 47 1 11.5559 -7.1322 -0.8823 48 1 11.3317 -5.9435 -3.6450 49 1 11.4753 -5.1188 -2.0671 50 1 3.6519 -1.5689 -2.1990 51 1 3.9902 0.0038 -1.4341 52 1 2.9818 -0.6354 -4.7832 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132061699.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:51 Heat of formation + Delta-G solvation = -95.489026 kcal Electronic energy + Delta-G solvation = -30026.531983 eV Core-core repulsion = 26024.459150 eV Total energy + Delta-G solvation = -4002.072833 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.12 seconds Orbital eigenvalues (eV) -41.51046 -40.73768 -39.28072 -38.01735 -36.14094 -35.51463 -34.66331 -32.46169 -31.76175 -30.76919 -29.57803 -28.61567 -27.51852 -26.44063 -24.03930 -23.06274 -22.24628 -21.59938 -21.52862 -20.99925 -20.56360 -18.84938 -18.34953 -17.75551 -17.43353 -17.08104 -16.95451 -16.38650 -16.34180 -15.80876 -15.79499 -15.41013 -15.22310 -15.01511 -14.77345 -14.44872 -14.24704 -14.17398 -14.12454 -13.65727 -13.47226 -13.07038 -12.76336 -12.71321 -12.69248 -12.56761 -12.29728 -12.29127 -12.13353 -12.03748 -11.99014 -11.95610 -11.68445 -11.66471 -11.43885 -11.41599 -11.15063 -10.97798 -10.86945 -10.53374 -10.30508 -10.09266 -8.61291 -7.85430 -5.31683 1.41504 1.45958 1.48845 1.50819 1.56805 1.78124 2.40820 2.51797 3.30544 3.47520 3.54779 3.65024 3.74682 3.81149 3.97838 4.09680 4.19133 4.24898 4.29001 4.34382 4.40066 4.46158 4.52822 4.56060 4.61538 4.67490 4.71371 4.79732 4.80312 4.89426 4.96222 5.00833 5.07795 5.08173 5.16576 5.19208 5.22658 5.24098 5.30417 5.33255 5.42113 5.44394 5.46558 5.54602 5.60987 5.70650 5.79523 6.40009 6.40716 6.52491 7.09965 7.15299 7.21571 7.90229 8.39644 9.19554 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.013621 B = 0.002632 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2055.184443 B =10637.101843 C =11934.157557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.152 3.848 3 H 0.020 0.980 4 C -0.118 4.118 5 C -0.108 4.108 6 C 0.133 3.867 7 H 0.055 0.945 8 N -0.703 5.703 9 C 0.504 3.496 10 O -0.576 6.576 11 C 0.108 3.892 12 N -0.716 5.716 13 C 0.521 3.479 14 O -0.575 6.575 15 C -0.113 4.113 16 C -0.116 4.116 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.119 4.119 20 C 0.179 3.821 21 N -0.603 5.603 22 C -0.251 4.251 23 H 0.073 0.927 24 C -0.052 4.052 25 N -0.933 5.933 26 Si 0.957 3.043 27 H -0.271 1.271 28 H -0.297 1.297 29 H -0.284 1.284 30 H 0.046 0.954 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.095 0.905 34 H 0.053 0.947 35 H 0.087 0.913 36 H 0.073 0.927 37 H 0.416 0.584 38 H 0.105 0.895 39 H 0.118 0.882 40 H 0.413 0.587 41 H 0.112 0.888 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.081 0.919 45 H 0.077 0.923 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.079 0.921 49 H 0.067 0.933 50 H 0.043 0.957 51 H -0.003 1.003 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.093 -9.148 9.891 18.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.047 3.953 3 H 0.038 0.962 4 C -0.157 4.157 5 C -0.146 4.146 6 C 0.026 3.974 7 H 0.073 0.927 8 N -0.354 5.354 9 C 0.291 3.709 10 O -0.456 6.456 11 C -0.019 4.019 12 N -0.370 5.370 13 C 0.309 3.691 14 O -0.455 6.455 15 C -0.134 4.134 16 C -0.153 4.153 17 C -0.156 4.156 18 C -0.160 4.160 19 C -0.157 4.157 20 C 0.052 3.948 21 N -0.327 5.327 22 C -0.382 4.382 23 H 0.091 0.909 24 C -0.248 4.248 25 N -0.579 5.579 26 Si 0.786 3.214 27 H -0.196 1.196 28 H -0.223 1.223 29 H -0.210 1.210 30 H 0.065 0.935 31 H 0.055 0.945 32 H 0.097 0.903 33 H 0.113 0.887 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.091 0.909 37 H 0.253 0.747 38 H 0.122 0.878 39 H 0.136 0.864 40 H 0.251 0.749 41 H 0.130 0.870 42 H 0.080 0.920 43 H 0.102 0.898 44 H 0.099 0.901 45 H 0.096 0.904 46 H 0.099 0.901 47 H 0.077 0.923 48 H 0.098 0.902 49 H 0.085 0.915 50 H 0.061 0.939 51 H 0.015 0.985 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 13.218 -9.183 9.699 18.791 hybrid contribution -0.631 0.018 -1.291 1.437 sum 12.587 -9.166 8.407 17.695 Atomic orbital electron populations 1.21736 0.94851 1.01140 1.00979 1.20809 0.94248 0.93378 0.86837 0.96196 1.21954 0.94672 1.00878 0.98216 1.21656 0.97018 1.00042 0.95916 1.21529 0.78969 0.99272 0.97596 0.92682 1.45798 1.07879 1.26978 1.54778 1.20907 0.90945 0.81292 0.77790 1.90719 1.64323 1.43953 1.46561 1.21076 0.90335 0.90560 0.99972 1.45822 1.08442 1.27167 1.55559 1.21102 0.81227 0.87038 0.79763 1.90642 1.48505 1.54448 1.51909 1.22046 0.99035 0.91945 1.00352 1.22401 0.99740 0.93090 1.00114 1.22516 0.93304 0.96929 1.02887 1.22363 0.98336 0.94718 1.00543 1.22170 0.92450 0.98974 1.02120 1.20768 0.83751 0.95294 0.94979 1.44301 1.02573 1.65718 1.20100 1.19418 0.95534 1.36606 0.86598 0.90934 1.25799 0.99131 1.00860 0.98966 1.70159 1.25852 1.45554 1.16359 0.85494 0.78645 0.79027 0.78274 1.19616 1.22331 1.21034 0.93501 0.94452 0.90338 0.88669 0.92865 0.89487 0.90883 0.74683 0.87758 0.86388 0.74878 0.86980 0.92043 0.89805 0.90073 0.90399 0.90054 0.92260 0.90216 0.91472 0.93896 0.98465 0.94665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.58 7.95 71.98 0.57 -4.01 16 2 C 0.15 5.92 3.49 44.98 0.16 6.08 16 3 H 0.02 0.81 8.14 -2.38 -0.02 0.79 16 4 C -0.12 -3.51 5.38 30.68 0.17 -3.34 16 5 C -0.11 -3.01 5.35 30.63 0.16 -2.84 16 6 C 0.13 4.84 2.61 45.07 0.12 4.96 16 7 H 0.05 2.35 7.58 -2.39 -0.02 2.33 16 8 N -0.70 -20.53 5.08 -442.16 -2.25 -22.78 16 9 C 0.50 16.03 7.86 87.66 0.69 16.72 16 10 O -0.58 -23.78 15.33 -3.02 -0.05 -23.82 16 11 C 0.11 2.65 6.15 85.63 0.53 3.18 16 12 N -0.72 -18.13 5.46 -466.79 -2.55 -20.68 16 13 C 0.52 13.12 7.00 87.66 0.61 13.73 16 14 O -0.58 -17.80 15.21 -3.04 -0.05 -17.85 16 15 C -0.11 -2.13 3.30 -10.81 -0.04 -2.16 16 16 C -0.12 -1.84 6.30 31.70 0.20 -1.64 16 17 C -0.12 -1.51 6.91 31.91 0.22 -1.29 16 18 C -0.12 -1.74 6.83 31.67 0.22 -1.52 16 19 C -0.12 -2.13 6.40 31.32 0.20 -1.93 16 20 C 0.18 8.67 4.86 86.36 0.42 9.09 16 21 N -0.60 -29.86 2.99 -675.22 -2.02 -31.88 16 22 C -0.25 -13.85 8.57 84.03 0.72 -13.13 16 23 H 0.07 3.86 6.24 -2.91 -0.02 3.84 16 24 C -0.05 -3.02 4.94 84.86 0.42 -2.60 16 25 N -0.93 -56.99 11.23 21.65 0.24 -56.75 16 26 Si 0.96 46.75 29.58 68.60 2.03 48.77 16 27 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 28 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 29 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 30 H 0.05 1.70 7.42 -2.39 -0.02 1.68 16 31 H 0.04 1.47 7.64 -2.39 -0.02 1.45 16 32 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 33 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 36 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 37 H 0.42 8.73 8.60 -92.71 -0.80 7.93 16 38 H 0.10 2.47 8.14 -2.39 -0.02 2.45 16 39 H 0.12 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.41 10.73 7.42 -92.71 -0.69 10.05 16 41 H 0.11 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.06 1.09 7.85 -2.39 -0.02 1.07 16 43 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 45 H 0.08 0.86 8.14 -2.39 -0.02 0.85 16 46 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 48 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 49 H 0.07 1.54 6.39 -2.38 -0.02 1.52 16 50 H 0.04 2.50 6.15 -2.39 -0.01 2.49 16 51 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 52 H 0.24 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -75.56 403.98 0.16 -75.39 By element: Atomic # 1 Polarization: 30.87 SS G_CDS: -0.57 Total: 30.30 kcal Atomic # 6 Polarization: 13.93 SS G_CDS: 5.37 Total: 19.29 kcal Atomic # 7 Polarization: -125.52 SS G_CDS: -6.57 Total: -132.09 kcal Atomic # 8 Polarization: -41.58 SS G_CDS: -0.09 Total: -41.67 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.77 kcal Total: -75.56 0.16 -75.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132061699.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.095 kcal (2) G-P(sol) polarization free energy of solvation -75.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.12 seconds