Wall clock time and date at job start Tue Mar 31 2020 21:26:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50697 * 120.00088 * 2 1 4 4 C 1.50697 * 119.99680 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46958 * 95.00250 * 4 2 1 6 6 C 1.50697 * 109.47003 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00320 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00022 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.53427 * 325.10202 * 9 8 6 11 11 C 1.53098 * 109.50304 * 85.18450 * 9 8 6 12 12 C 1.53122 * 109.15798 * 62.28430 * 11 9 8 13 13 C 1.53040 * 109.27606 * 57.65600 * 12 11 9 14 14 H 1.08994 * 109.45908 * 60.83566 * 13 12 11 15 15 C 1.52997 * 109.46169 * 180.80858 * 13 12 11 16 16 N 1.46854 * 109.52064 * 300.81902 * 13 12 11 17 17 C 1.46904 * 110.99755 * 185.83950 * 16 13 12 18 18 C 1.50691 * 109.46785 * 160.22613 * 17 16 13 19 19 O 1.21298 * 120.00440 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99715 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00282 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99693 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00516 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00143 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99835 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47428 * 89.99644 * 25 23 21 27 27 H 1.48502 * 109.47058 * 210.00102 * 25 23 21 28 28 H 1.48504 * 109.47086 * 329.99983 * 25 23 21 29 29 C 1.46845 * 111.19652 * 61.74683 * 16 13 12 30 30 H 1.07999 * 120.00132 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.99862 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46942 * 269.99886 * 3 2 1 33 33 H 1.08999 * 109.46933 * 29.99555 * 3 2 1 34 34 H 1.08998 * 109.47078 * 149.99894 * 3 2 1 35 35 H 1.08999 * 109.47570 * 335.00245 * 4 2 1 36 36 H 1.09004 * 109.46695 * 215.00036 * 4 2 1 37 37 H 1.09007 * 109.46894 * 59.99909 * 5 4 2 38 38 H 1.08990 * 109.47030 * 299.99616 * 5 4 2 39 39 H 0.96993 * 119.99790 * 0.02562 * 8 6 5 40 40 H 1.09007 * 109.52182 * 302.38460 * 11 9 8 41 41 H 1.08992 * 109.52812 * 182.18940 * 11 9 8 42 42 H 1.08998 * 109.50401 * 297.71475 * 12 11 9 43 43 H 1.08995 * 109.50403 * 177.59565 * 12 11 9 44 44 H 1.09002 * 109.47237 * 187.76516 * 15 13 12 45 45 H 1.09003 * 109.47105 * 307.76154 * 15 13 12 46 46 H 1.08998 * 109.47462 * 67.76135 * 15 13 12 47 47 H 1.09001 * 109.46778 * 280.22284 * 17 16 13 48 48 H 1.09003 * 109.46780 * 40.22502 * 17 16 13 49 49 H 0.97003 * 120.00409 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99448 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.46712 * 58.26848 * 29 16 13 52 52 H 1.09001 * 109.46319 * 178.25433 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1814 -2.9893 -1.4357 7 8 3.4060 -3.5595 -0.3890 8 7 3.6070 -3.5223 -2.5982 9 6 4.3405 -4.7905 -2.5975 10 1 4.9660 -4.8492 -1.7069 11 6 3.3471 -5.9555 -2.6017 12 6 2.5129 -5.8999 -3.8846 13 6 3.4461 -5.9496 -5.0966 14 1 4.0101 -6.8821 -5.0825 15 6 2.6181 -5.8740 -6.3809 16 7 4.3763 -4.8143 -5.0466 17 6 5.1955 -4.7510 -6.2644 18 6 5.7658 -3.3642 -6.4145 19 8 5.5142 -2.5122 -5.5886 20 7 6.5546 -3.0704 -7.4670 21 6 7.0731 -1.8086 -7.6040 22 1 6.8497 -1.0502 -6.8681 23 6 7.8867 -1.5057 -8.6888 24 7 8.3841 -0.2963 -8.8197 25 14 8.2737 -2.8175 -9.9611 26 1 7.2498 -2.7819 -11.0361 27 1 9.6143 -2.5601 -10.5456 28 1 8.2646 -4.1537 -9.3130 29 6 5.2208 -4.8722 -3.8467 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2453 1.6197 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1747 0.5138 35 1 1.4386 -2.0853 0.4352 36 1 2.9742 -1.1986 0.5900 37 1 3.0524 -0.9043 -1.8709 38 1 1.5168 -1.7910 -2.0257 39 1 3.4283 -3.0658 -3.4351 40 1 2.6895 -5.8766 -1.7360 41 1 3.8917 -6.8988 -2.5620 42 1 1.9385 -4.9738 -3.9053 43 1 1.8330 -6.7512 -3.9137 44 1 3.2649 -6.0474 -7.2409 45 1 1.8369 -6.6337 -6.3548 46 1 2.1625 -4.8871 -6.4620 47 1 6.0092 -5.4727 -6.1927 48 1 4.5770 -4.9854 -7.1308 49 1 6.7555 -3.7516 -8.1277 50 1 8.9524 -0.0851 -9.5769 51 1 5.7765 -5.8098 -3.8385 52 1 5.9197 -4.0358 -3.8537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132065823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:53 Heat of formation + Delta-G solvation = -61.201130 kcal Electronic energy + Delta-G solvation = -30251.370000 eV Core-core repulsion = 26250.784002 eV Total energy + Delta-G solvation = -4000.585998 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.28284 -39.04542 -37.83867 -36.47897 -34.72829 -33.99466 -32.66090 -31.82881 -31.65763 -30.59886 -27.90280 -27.39973 -26.70622 -24.62825 -24.44074 -22.95556 -21.34148 -20.41378 -19.36437 -19.15009 -18.50377 -18.29384 -17.02543 -16.23267 -15.99055 -15.76414 -15.37420 -14.96414 -14.90026 -14.73241 -14.41762 -14.14748 -13.96251 -13.82420 -13.47848 -13.30501 -13.16794 -12.96602 -12.89438 -12.52641 -12.42739 -12.12029 -12.04598 -11.98722 -11.86020 -11.81420 -11.66098 -11.47532 -11.18417 -11.12030 -10.94382 -10.84016 -10.63592 -10.57892 -10.16757 -9.99718 -9.71122 -9.56538 -9.13296 -8.87322 -8.59492 -8.19398 -8.01997 -6.32916 -3.84168 2.07324 2.82959 2.99940 3.04334 3.13023 3.40137 3.72333 3.82846 4.08209 4.64239 4.68134 4.72107 4.78230 4.81421 4.91952 5.00960 5.08299 5.16298 5.19688 5.23711 5.32339 5.37228 5.41919 5.47773 5.49685 5.53418 5.54821 5.63710 5.67602 5.75694 5.76778 5.84154 5.86711 5.88667 5.90181 5.91668 5.94014 6.00352 6.08629 6.13477 6.22523 6.32376 6.50225 6.72331 6.75232 7.09519 7.25535 7.56893 7.82956 8.12765 8.45981 8.58708 8.93840 9.41140 9.82233 10.80264 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.003039 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.814240 B = 9210.554597 C =11197.439926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.121 4.121 3 C -0.123 4.123 4 C -0.068 4.068 5 C -0.135 4.135 6 C 0.512 3.488 7 O -0.558 6.558 8 N -0.705 5.705 9 C 0.154 3.846 10 H 0.087 0.913 11 C -0.132 4.132 12 C -0.107 4.107 13 C 0.079 3.921 14 H 0.038 0.962 15 C -0.150 4.150 16 N -0.510 5.510 17 C 0.036 3.964 18 C 0.454 3.546 19 O -0.559 6.559 20 N -0.593 5.593 21 C -0.303 4.303 22 H 0.119 0.881 23 C 0.041 3.959 24 N -0.882 5.882 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.277 1.277 28 H -0.270 1.270 29 C 0.049 3.951 30 H 0.096 0.904 31 H 0.096 0.904 32 H 0.070 0.930 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.073 0.927 36 H 0.076 0.924 37 H 0.096 0.904 38 H 0.091 0.909 39 H 0.417 0.583 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.096 0.904 49 H 0.369 0.631 50 H 0.273 0.727 51 H 0.040 0.960 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.311 -9.655 10.064 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.121 4.121 3 C -0.180 4.180 4 C -0.106 4.106 5 C -0.175 4.175 6 C 0.299 3.701 7 O -0.437 6.437 8 N -0.357 5.357 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.171 4.171 12 C -0.145 4.145 13 C -0.029 4.029 14 H 0.056 0.944 15 C -0.207 4.207 16 N -0.235 5.235 17 C -0.096 4.096 18 C 0.240 3.760 19 O -0.440 6.440 20 N -0.233 5.233 21 C -0.432 4.432 22 H 0.137 0.863 23 C -0.162 4.162 24 N -0.522 5.522 25 Si 0.705 3.295 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.196 1.196 29 C -0.080 4.080 30 H 0.114 0.886 31 H 0.114 0.886 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.092 0.908 36 H 0.094 0.906 37 H 0.115 0.885 38 H 0.110 0.890 39 H 0.254 0.746 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.075 0.925 45 H 0.077 0.923 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.114 0.886 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.058 0.942 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -13.454 -8.894 11.256 19.667 hybrid contribution 0.912 -1.483 -1.781 2.490 sum -12.542 -10.378 9.475 18.836 Atomic orbital electron populations 1.23675 0.95230 1.01714 1.03164 1.21825 0.95442 0.95854 0.99007 1.20904 1.00202 0.94388 1.02459 1.20417 1.00669 0.94003 0.95520 1.21617 1.01329 0.95633 0.98953 1.20679 0.79177 0.86605 0.83662 1.90656 1.57953 1.63413 1.31666 1.45990 1.56454 1.23522 1.09744 1.20872 0.92758 0.83542 0.97956 0.89514 1.21982 0.98761 0.98041 0.98289 1.21573 0.97444 1.02298 0.93157 1.21671 0.93760 0.91652 0.95807 0.94406 1.21953 0.99657 1.02783 0.96350 1.61437 1.18908 1.41933 1.01199 1.22021 0.96719 0.96800 0.94022 1.19665 0.83185 0.89343 0.83849 1.90528 1.61619 1.49074 1.42772 1.42225 1.45524 1.12471 1.23077 1.19404 1.26363 0.87281 1.10115 0.86294 1.25030 0.97037 0.96446 0.97661 1.69623 1.33137 1.18819 1.30645 0.86691 0.79118 0.81392 0.82272 1.19651 1.20246 1.19587 1.22437 0.94993 1.01797 0.88742 0.88577 0.88610 0.91108 0.91997 0.91705 0.90798 0.90557 0.88522 0.89030 0.74625 0.91340 0.91562 0.90968 0.91784 0.92453 0.92299 0.91280 0.93240 0.88616 0.79840 0.91648 0.94158 0.88379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.82 13.89 29.01 0.40 -1.42 16 2 C -0.12 -1.20 5.31 -101.07 -0.54 -1.73 16 3 C -0.12 -1.10 10.03 36.00 0.36 -0.74 16 4 C -0.07 -0.75 4.67 -27.88 -0.13 -0.88 16 5 C -0.14 -1.53 5.68 -27.88 -0.16 -1.69 16 6 C 0.51 7.14 7.80 -10.99 -0.09 7.05 16 7 O -0.56 -9.33 15.65 5.55 0.09 -9.24 16 8 N -0.71 -9.60 4.40 -53.74 -0.24 -9.84 16 9 C 0.15 2.02 2.81 -67.86 -0.19 1.83 16 10 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 11 C -0.13 -1.48 5.67 -26.62 -0.15 -1.63 16 12 C -0.11 -1.11 5.20 -26.65 -0.14 -1.25 16 13 C 0.08 0.88 2.44 -67.72 -0.17 0.71 16 14 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 15 C -0.15 -1.51 8.59 37.16 0.32 -1.19 16 16 N -0.51 -7.08 3.53 -228.12 -0.81 -7.88 16 17 C 0.04 0.54 5.31 -4.98 -0.03 0.52 16 18 C 0.45 9.57 7.49 -10.99 -0.08 9.48 16 19 O -0.56 -13.61 14.74 5.54 0.08 -13.53 16 20 N -0.59 -13.48 5.09 -10.96 -0.06 -13.54 16 21 C -0.30 -8.29 10.16 -14.93 -0.15 -8.44 16 22 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 23 C 0.04 1.10 5.50 -17.47 -0.10 1.01 16 24 N -0.88 -25.36 13.96 55.50 0.77 -24.59 16 25 Si 0.88 18.98 27.74 -169.99 -4.71 14.26 16 26 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 28 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 29 C 0.05 0.68 4.70 -3.83 -0.02 0.66 16 30 H 0.10 0.82 7.99 -52.49 -0.42 0.40 16 31 H 0.10 0.77 8.04 -52.49 -0.42 0.35 16 32 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.48 8.06 -51.93 -0.42 0.07 16 34 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 35 H 0.07 0.84 7.95 -51.93 -0.41 0.43 16 36 H 0.08 0.91 8.05 -51.93 -0.42 0.49 16 37 H 0.10 1.09 8.14 -51.92 -0.42 0.66 16 38 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.42 5.98 8.17 -40.82 -0.33 5.64 16 40 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.82 7.72 -51.93 -0.40 0.42 16 43 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.06 0.57 6.38 -51.93 -0.33 0.23 16 45 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 46 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 47 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 48 H 0.10 1.29 5.42 -51.93 -0.28 1.01 16 49 H 0.37 7.42 5.76 -40.82 -0.24 7.19 16 50 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 51 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 52 H 0.10 1.69 6.70 -51.93 -0.35 1.35 16 LS Contribution 412.09 15.07 6.21 6.21 Total: -1.00 -31.48 412.09 -8.54 -40.02 By element: Atomic # 1 Polarization: 24.86 SS G_CDS: -9.03 Total: 15.83 kcal Atomic # 6 Polarization: 3.15 SS G_CDS: -0.85 Total: 2.30 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.32 Total: -55.85 kcal Atomic # 8 Polarization: -22.94 SS G_CDS: 0.17 Total: -22.77 kcal Atomic # 14 Polarization: 18.98 SS G_CDS: -4.71 Total: 14.26 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -31.48 -8.54 -40.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132065823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.184 kcal (2) G-P(sol) polarization free energy of solvation -31.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds