Wall clock time and date at job start Tue Mar 31 2020 21:26:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31009 * 1 3 3 C 1.50697 * 120.00088 * 2 1 4 4 C 1.50697 * 119.99680 * 179.97438 * 2 1 3 5 5 C 1.53005 * 109.46958 * 95.00250 * 4 2 1 6 6 C 1.50697 * 109.47003 * 179.97438 * 5 4 2 7 7 O 1.21287 * 120.00320 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00108 * 180.02562 * 6 5 4 9 9 C 1.46503 * 120.00022 * 179.97438 * 8 6 5 10 10 H 1.08994 * 109.53427 * 325.10202 * 9 8 6 11 11 C 1.53098 * 109.50304 * 85.18450 * 9 8 6 12 12 C 1.53122 * 109.15798 * 62.28430 * 11 9 8 13 13 C 1.53040 * 109.27606 * 57.65600 * 12 11 9 14 14 H 1.08994 * 109.45908 * 60.83566 * 13 12 11 15 15 C 1.52997 * 109.46169 * 180.80858 * 13 12 11 16 16 N 1.46854 * 109.52064 * 300.81902 * 13 12 11 17 17 C 1.46904 * 110.99755 * 185.83950 * 16 13 12 18 18 C 1.50691 * 109.46785 * 160.22613 * 17 16 13 19 19 O 1.21298 * 120.00440 * 359.97438 * 18 17 16 20 20 N 1.34775 * 119.99715 * 180.02562 * 18 17 16 21 21 C 1.37101 * 120.00282 * 179.97438 * 20 18 17 22 22 H 1.08004 * 119.99693 * 0.02562 * 21 20 18 23 23 C 1.38949 * 120.00516 * 179.97438 * 21 20 18 24 24 N 1.31415 * 120.00143 * 180.02562 * 23 21 20 25 25 Si 1.86801 * 119.99835 * 0.02562 * 23 21 20 26 26 H 1.48503 * 109.47428 * 89.99644 * 25 23 21 27 27 H 1.48502 * 109.47058 * 210.00102 * 25 23 21 28 28 H 1.48504 * 109.47086 * 329.99983 * 25 23 21 29 29 C 1.46845 * 111.19652 * 61.74683 * 16 13 12 30 30 H 1.07999 * 120.00132 * 179.97438 * 1 2 3 31 31 H 1.07998 * 119.99862 * 0.02562 * 1 2 3 32 32 H 1.09002 * 109.46942 * 269.99886 * 3 2 1 33 33 H 1.08999 * 109.46933 * 29.99555 * 3 2 1 34 34 H 1.08998 * 109.47078 * 149.99894 * 3 2 1 35 35 H 1.08999 * 109.47570 * 335.00245 * 4 2 1 36 36 H 1.09004 * 109.46695 * 215.00036 * 4 2 1 37 37 H 1.09007 * 109.46894 * 59.99909 * 5 4 2 38 38 H 1.08990 * 109.47030 * 299.99616 * 5 4 2 39 39 H 0.96993 * 119.99790 * 0.02562 * 8 6 5 40 40 H 1.09007 * 109.52182 * 302.38460 * 11 9 8 41 41 H 1.08992 * 109.52812 * 182.18940 * 11 9 8 42 42 H 1.08998 * 109.50401 * 297.71475 * 12 11 9 43 43 H 1.08995 * 109.50403 * 177.59565 * 12 11 9 44 44 H 1.09002 * 109.47237 * 187.76516 * 15 13 12 45 45 H 1.09003 * 109.47105 * 307.76154 * 15 13 12 46 46 H 1.08998 * 109.47462 * 67.76135 * 15 13 12 47 47 H 1.09001 * 109.46778 * 280.22284 * 17 16 13 48 48 H 1.09003 * 109.46780 * 40.22502 * 17 16 13 49 49 H 0.97003 * 120.00409 * 359.97438 * 20 18 17 50 50 H 0.97004 * 119.99448 * 179.97438 * 24 23 21 51 51 H 1.08997 * 109.46712 * 58.26848 * 29 16 13 52 52 H 1.09001 * 109.46319 * 178.25433 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6845 -1.4363 6 6 3.1814 -2.9893 -1.4357 7 8 3.4060 -3.5595 -0.3890 8 7 3.6070 -3.5223 -2.5982 9 6 4.3405 -4.7905 -2.5975 10 1 4.9660 -4.8492 -1.7069 11 6 3.3471 -5.9555 -2.6017 12 6 2.5129 -5.8999 -3.8846 13 6 3.4461 -5.9496 -5.0966 14 1 4.0101 -6.8821 -5.0825 15 6 2.6181 -5.8740 -6.3809 16 7 4.3763 -4.8143 -5.0466 17 6 5.1955 -4.7510 -6.2644 18 6 5.7658 -3.3642 -6.4145 19 8 5.5142 -2.5122 -5.5886 20 7 6.5546 -3.0704 -7.4670 21 6 7.0731 -1.8086 -7.6040 22 1 6.8497 -1.0502 -6.8681 23 6 7.8867 -1.5057 -8.6888 24 7 8.3841 -0.2963 -8.8197 25 14 8.2737 -2.8175 -9.9611 26 1 7.2498 -2.7819 -11.0361 27 1 9.6143 -2.5601 -10.5456 28 1 8.2646 -4.1537 -9.3130 29 6 5.2208 -4.8722 -3.8467 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2453 1.6197 -1.0277 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1747 0.5138 35 1 1.4386 -2.0853 0.4352 36 1 2.9742 -1.1986 0.5900 37 1 3.0524 -0.9043 -1.8709 38 1 1.5168 -1.7910 -2.0257 39 1 3.4283 -3.0658 -3.4351 40 1 2.6895 -5.8766 -1.7360 41 1 3.8917 -6.8988 -2.5620 42 1 1.9385 -4.9738 -3.9053 43 1 1.8330 -6.7512 -3.9137 44 1 3.2649 -6.0474 -7.2409 45 1 1.8369 -6.6337 -6.3548 46 1 2.1625 -4.8871 -6.4620 47 1 6.0092 -5.4727 -6.1927 48 1 4.5770 -4.9854 -7.1308 49 1 6.7555 -3.7516 -8.1277 50 1 8.9524 -0.0851 -9.5769 51 1 5.7765 -5.8098 -3.8385 52 1 5.9197 -4.0358 -3.8537 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132065823.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:49 Heat of formation + Delta-G solvation = -82.736872 kcal Electronic energy + Delta-G solvation = -30252.303860 eV Core-core repulsion = 26250.784002 eV Total energy + Delta-G solvation = -4001.519858 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.40265 -40.38042 -39.30197 -37.33161 -36.02048 -35.72145 -33.78449 -33.61792 -32.81320 -31.53325 -29.22837 -28.13762 -27.72862 -26.25060 -25.44548 -24.12619 -22.34372 -21.48330 -21.15390 -20.24949 -20.06203 -19.31723 -18.08872 -17.70257 -17.15589 -16.89535 -16.75625 -16.38454 -16.09508 -15.65131 -15.53418 -15.38763 -15.10760 -14.90205 -14.78233 -14.59372 -14.36812 -14.14694 -14.00093 -13.86220 -13.64118 -13.46133 -13.11396 -12.99776 -12.87016 -12.80560 -12.63227 -12.54069 -12.38768 -12.34550 -11.98235 -11.96982 -11.82667 -11.73190 -11.65159 -11.41851 -11.11833 -10.85609 -10.34368 -10.17942 -9.93330 -9.91434 -9.16732 -8.37345 -5.96745 1.30799 1.31181 1.36837 1.45083 1.69197 2.04677 2.25221 2.33525 2.63238 3.18708 3.27307 3.67694 3.77898 3.86183 3.96266 4.00102 4.05969 4.09111 4.24243 4.29074 4.33932 4.39001 4.44282 4.46455 4.48934 4.57283 4.65455 4.67392 4.69862 4.82810 4.85108 4.91149 4.96622 5.01113 5.03919 5.08071 5.09275 5.12718 5.17578 5.24265 5.32792 5.46102 5.57369 5.63590 5.74962 5.94807 5.98486 6.05996 6.26403 6.65061 6.67527 6.94943 7.31591 7.47182 8.05066 8.80401 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009998 B = 0.003039 C = 0.002500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2799.814240 B = 9210.554597 C =11197.439926 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.137 4.137 3 C -0.123 4.123 4 C -0.062 4.062 5 C -0.129 4.129 6 C 0.509 3.491 7 O -0.588 6.588 8 N -0.704 5.704 9 C 0.152 3.848 10 H 0.071 0.929 11 C -0.123 4.123 12 C -0.101 4.101 13 C 0.081 3.919 14 H 0.056 0.944 15 C -0.148 4.148 16 N -0.524 5.524 17 C 0.048 3.952 18 C 0.455 3.545 19 O -0.597 6.597 20 N -0.598 5.598 21 C -0.320 4.320 22 H 0.057 0.943 23 C -0.017 4.017 24 N -0.938 5.938 25 Si 0.962 3.038 26 H -0.257 1.257 27 H -0.279 1.279 28 H -0.232 1.232 29 C 0.056 3.944 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.061 0.939 37 H 0.095 0.905 38 H 0.109 0.891 39 H 0.413 0.587 40 H 0.057 0.943 41 H 0.084 0.916 42 H 0.059 0.941 43 H 0.089 0.911 44 H 0.063 0.937 45 H 0.081 0.919 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.125 0.875 49 H 0.387 0.613 50 H 0.277 0.723 51 H 0.061 0.939 52 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.776 -13.190 8.575 21.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.137 4.137 3 C -0.180 4.180 4 C -0.100 4.100 5 C -0.169 4.169 6 C 0.297 3.703 7 O -0.470 6.470 8 N -0.354 5.354 9 C 0.047 3.953 10 H 0.089 0.911 11 C -0.161 4.161 12 C -0.139 4.139 13 C -0.026 4.026 14 H 0.074 0.926 15 C -0.205 4.205 16 N -0.250 5.250 17 C -0.083 4.083 18 C 0.242 3.758 19 O -0.480 6.480 20 N -0.240 5.240 21 C -0.449 4.449 22 H 0.075 0.925 23 C -0.215 4.215 24 N -0.579 5.579 25 Si 0.782 3.218 26 H -0.182 1.182 27 H -0.205 1.205 28 H -0.155 1.155 29 C -0.072 4.072 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.127 0.873 39 H 0.250 0.750 40 H 0.076 0.924 41 H 0.102 0.898 42 H 0.078 0.922 43 H 0.107 0.893 44 H 0.082 0.918 45 H 0.100 0.900 46 H 0.071 0.929 47 H 0.093 0.907 48 H 0.142 0.858 49 H 0.222 0.778 50 H 0.086 0.914 51 H 0.079 0.921 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -14.944 -12.462 9.776 21.776 hybrid contribution 1.297 -0.308 -1.176 1.778 sum -13.647 -12.769 8.600 20.573 Atomic orbital electron populations 1.23854 0.94903 1.02640 1.01413 1.21814 0.95839 0.95460 1.00555 1.20913 1.00201 0.94359 1.02483 1.20323 1.00088 0.94712 0.94866 1.21619 1.01605 0.94049 0.99633 1.21105 0.78902 0.87140 0.83172 1.90634 1.59306 1.64448 1.32581 1.46049 1.56110 1.23802 1.09459 1.20914 0.93187 0.84273 0.96936 0.91092 1.21901 0.98161 0.97569 0.98508 1.21558 0.97343 1.02780 0.92234 1.21780 0.93265 0.90942 0.96652 0.92638 1.21950 1.00143 1.02668 0.95787 1.61343 1.19006 1.44242 1.00412 1.21926 0.98003 0.92559 0.95807 1.20910 0.81306 0.91433 0.82121 1.90520 1.62360 1.51242 1.43918 1.42066 1.46328 1.11176 1.24439 1.18972 1.27952 0.88411 1.09578 0.92531 1.26063 0.96080 0.99369 1.00031 1.69812 1.34297 1.21860 1.31969 0.85407 0.78690 0.79120 0.78556 1.18199 1.20485 1.15520 1.22269 0.94651 1.01001 0.89314 0.88090 0.87237 0.91301 0.90701 0.92136 0.91295 0.92039 0.88651 0.87318 0.75030 0.92391 0.89778 0.92209 0.89299 0.91800 0.90036 0.92887 0.90658 0.85779 0.77795 0.91379 0.92142 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.24 13.89 67.77 0.94 -2.30 16 2 C -0.14 -2.66 5.31 -16.50 -0.09 -2.74 16 3 C -0.12 -2.19 10.03 71.23 0.71 -1.47 16 4 C -0.06 -1.40 4.67 29.85 0.14 -1.26 16 5 C -0.13 -3.00 5.68 29.85 0.17 -2.83 16 6 C 0.51 14.68 7.80 87.66 0.68 15.36 16 7 O -0.59 -20.37 15.65 -3.05 -0.05 -20.42 16 8 N -0.70 -19.66 4.40 -442.31 -1.95 -21.61 16 9 C 0.15 3.98 2.81 45.04 0.13 4.10 16 10 H 0.07 2.07 7.58 -2.39 -0.02 2.05 16 11 C -0.12 -2.51 5.67 30.67 0.17 -2.34 16 12 C -0.10 -1.80 5.20 30.65 0.16 -1.64 16 13 C 0.08 1.50 2.44 44.94 0.11 1.61 16 14 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 15 C -0.15 -2.39 8.59 71.98 0.62 -1.77 16 16 N -0.52 -13.53 3.53 -875.64 -3.09 -16.62 16 17 C 0.05 1.33 5.31 85.55 0.45 1.78 16 18 C 0.45 19.08 7.49 87.65 0.66 19.73 16 19 O -0.60 -30.31 14.74 -3.08 -0.05 -30.36 16 20 N -0.60 -26.92 5.09 -306.99 -1.56 -28.48 16 21 C -0.32 -18.20 10.16 84.04 0.85 -17.34 16 22 H 0.06 3.84 7.39 -2.91 -0.02 3.82 16 23 C -0.02 -0.95 5.50 84.93 0.47 -0.48 16 24 N -0.94 -56.10 13.96 21.66 0.30 -55.80 16 25 Si 0.96 38.16 27.74 68.60 1.90 40.06 16 26 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 27 H -0.28 -11.17 7.11 99.48 0.71 -10.46 16 28 H -0.23 -7.68 6.52 99.48 0.65 -7.04 16 29 C 0.06 1.53 4.70 86.33 0.41 1.93 16 30 H 0.10 1.60 7.99 -2.91 -0.02 1.57 16 31 H 0.11 1.55 8.04 -2.91 -0.02 1.53 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.07 1.11 8.06 -2.39 -0.02 1.09 16 34 H 0.06 1.10 8.08 -2.39 -0.02 1.08 16 35 H 0.07 1.60 7.95 -2.39 -0.02 1.59 16 36 H 0.06 1.55 8.05 -2.39 -0.02 1.53 16 37 H 0.10 2.25 8.14 -2.38 -0.02 2.23 16 38 H 0.11 2.13 8.14 -2.39 -0.02 2.12 16 39 H 0.41 12.22 8.17 -92.71 -0.76 11.46 16 40 H 0.06 1.33 8.14 -2.38 -0.02 1.31 16 41 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 42 H 0.06 1.23 7.72 -2.39 -0.02 1.21 16 43 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.06 0.95 6.38 -2.39 -0.02 0.94 16 45 H 0.08 0.97 8.13 -2.39 -0.02 0.96 16 46 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 47 H 0.08 1.78 8.00 -2.39 -0.02 1.76 16 48 H 0.12 2.82 5.42 -2.39 -0.01 2.80 16 49 H 0.39 14.49 5.76 -92.71 -0.53 13.95 16 50 H 0.28 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 52 H 0.06 2.04 6.70 -2.39 -0.02 2.02 16 Total: -1.00 -74.47 412.09 1.66 -72.81 By element: Atomic # 1 Polarization: 50.52 SS G_CDS: -0.44 Total: 50.08 kcal Atomic # 6 Polarization: 3.74 SS G_CDS: 6.59 Total: 10.33 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -6.30 Total: -122.52 kcal Atomic # 8 Polarization: -50.68 SS G_CDS: -0.09 Total: -50.77 kcal Atomic # 14 Polarization: 38.16 SS G_CDS: 1.90 Total: 40.06 kcal Total: -74.47 1.66 -72.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132065823.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.925 kcal (2) G-P(sol) polarization free energy of solvation -74.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds