Wall clock time and date at job start Tue Mar 31 2020 21:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00268 * 2 1 4 4 C 1.50703 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47206 * 94.99920 * 4 2 1 6 6 C 1.50703 * 109.47206 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00045 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00250 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.52771 * 34.89986 * 9 8 6 11 11 C 1.53119 * 109.50396 * 274.80881 * 9 8 6 12 12 C 1.53117 * 109.15841 * 297.70782 * 11 9 8 13 13 C 1.53043 * 109.27824 * 302.34955 * 12 11 9 14 14 H 1.08998 * 109.46099 * 299.15877 * 13 12 11 15 15 C 1.53002 * 109.45999 * 179.19442 * 13 12 11 16 16 N 1.46844 * 109.52589 * 59.17914 * 13 12 11 17 17 C 1.46891 * 111.00149 * 174.15999 * 16 13 12 18 18 C 1.50700 * 109.47215 * 199.78291 * 17 16 13 19 19 O 1.21289 * 120.00020 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00163 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00249 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99583 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00566 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99756 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47249 * 270.00823 * 25 23 21 27 27 H 1.48501 * 109.46938 * 30.00716 * 25 23 21 28 28 H 1.48500 * 109.46872 * 150.00089 * 25 23 21 29 29 C 1.46844 * 111.19561 * 298.25926 * 16 13 12 30 30 H 1.08003 * 120.00152 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99840 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46746 * 270.00052 * 3 2 1 33 33 H 1.09002 * 109.46877 * 29.99648 * 3 2 1 34 34 H 1.08995 * 109.47521 * 149.99936 * 3 2 1 35 35 H 1.09008 * 109.47042 * 334.99803 * 4 2 1 36 36 H 1.09006 * 109.47212 * 215.00290 * 4 2 1 37 37 H 1.09012 * 109.46828 * 60.00285 * 5 4 2 38 38 H 1.08997 * 109.47197 * 300.00454 * 5 4 2 39 39 H 0.97006 * 119.99975 * 0.02562 * 8 6 5 40 40 H 1.08992 * 109.52656 * 57.61643 * 11 9 8 41 41 H 1.08998 * 109.52049 * 177.74191 * 11 9 8 42 42 H 1.09001 * 109.50251 * 62.28967 * 12 11 9 43 43 H 1.09000 * 109.50536 * 182.36988 * 12 11 9 44 44 H 1.08994 * 109.47468 * 292.19039 * 15 13 12 45 45 H 1.08998 * 109.47055 * 52.19128 * 15 13 12 46 46 H 1.09003 * 109.47133 * 172.18744 * 15 13 12 47 47 H 1.08998 * 109.47191 * 79.78128 * 17 16 13 48 48 H 1.09001 * 109.47084 * 319.78320 * 17 16 13 49 49 H 0.97007 * 120.00383 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99985 * 359.97438 * 24 23 21 51 51 H 1.09000 * 109.46283 * 181.75505 * 29 16 13 52 52 H 1.09003 * 109.46496 * 301.72244 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 6 3.1815 -2.9894 -1.4356 7 8 3.4053 -3.5599 -0.3891 8 7 3.6070 -3.5224 -2.5981 9 6 4.3405 -4.7905 -2.5975 10 1 3.9525 -5.4355 -1.8091 11 6 5.8276 -4.5208 -2.3516 12 6 6.3786 -3.6641 -3.4948 13 6 6.1484 -4.3867 -4.8241 14 1 6.6737 -5.3416 -4.8140 15 6 6.6795 -3.5250 -5.9714 16 7 4.7111 -4.6208 -5.0129 17 6 4.4400 -5.1880 -6.3405 18 6 2.9916 -4.9687 -6.6943 19 8 2.2573 -4.3966 -5.9168 20 7 2.5120 -5.4092 -7.8743 21 6 1.1945 -5.2092 -8.1964 22 1 0.5409 -4.6990 -7.5044 23 6 0.7002 -5.6629 -9.4132 24 7 1.4954 -6.2841 -10.2550 25 14 -1.0951 -5.3910 -9.8518 26 1 -1.9009 -6.5444 -9.3768 27 1 -1.5805 -4.1471 -9.2020 28 1 -1.2311 -5.2652 -11.3252 29 6 4.1694 -5.4804 -3.9527 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2452 1.6196 -1.0276 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1748 0.5138 35 1 1.4386 -2.0853 0.4353 36 1 2.9743 -1.1986 0.5900 37 1 3.0524 -0.9044 -1.8709 38 1 1.5167 -1.7910 -2.0256 39 1 3.4283 -3.0659 -3.4351 40 1 5.9504 -3.9907 -1.4072 41 1 6.3675 -5.4668 -2.3112 42 1 5.8650 -2.7028 -3.5094 43 1 7.4467 -3.5038 -3.3473 44 1 6.0643 -2.6306 -6.0691 45 1 7.7096 -3.2363 -5.7622 46 1 6.6433 -4.0942 -6.9003 47 1 4.6535 -6.2568 -6.3294 48 1 5.0730 -4.6987 -7.0808 49 1 3.0992 -5.8671 -8.4960 50 1 2.4276 -6.4256 -10.0271 51 1 3.1104 -5.6609 -4.1371 52 1 4.7039 -6.4303 -3.9467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132065824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:59 Heat of formation + Delta-G solvation = -67.403736 kcal Electronic energy + Delta-G solvation = -30250.680438 eV Core-core repulsion = 26249.825474 eV Total energy + Delta-G solvation = -4000.854963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.28571 -39.03945 -37.81723 -36.50380 -34.76835 -34.26524 -32.65301 -31.84052 -31.08004 -30.60716 -27.74296 -27.44750 -26.63624 -24.57610 -24.38063 -23.03075 -21.38398 -20.43952 -19.59743 -19.13388 -18.52475 -17.90286 -17.04534 -16.42643 -16.05112 -15.84091 -15.54227 -14.94565 -14.73295 -14.53514 -14.45449 -14.19193 -13.92085 -13.81684 -13.73582 -13.44448 -13.30882 -12.96370 -12.88400 -12.54081 -12.32231 -12.12455 -11.99035 -11.89599 -11.87336 -11.64267 -11.42410 -11.21591 -11.14253 -10.98929 -10.96148 -10.82899 -10.58432 -10.23967 -10.16024 -9.87440 -9.73205 -9.53279 -9.15196 -8.87707 -8.54171 -8.04845 -7.97666 -6.76162 -3.89449 2.05974 2.80805 3.29559 3.33719 3.38684 3.52571 3.81275 3.86192 4.28507 4.63135 4.70195 4.73238 4.76225 4.88070 4.92345 4.98301 5.10517 5.13638 5.20461 5.23754 5.33113 5.35229 5.39143 5.45615 5.48332 5.50476 5.55706 5.61505 5.69609 5.74951 5.76051 5.77907 5.85731 5.87912 5.90291 5.94575 5.99530 6.02157 6.06325 6.14201 6.22516 6.32348 6.48898 6.70867 6.73055 7.12061 7.27406 7.80160 7.81087 8.07096 8.43910 8.59736 8.79884 9.47205 9.88054 10.67370 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008713 B = 0.003152 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.687344 B = 8881.902217 C =11223.561443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.127 4.127 3 C -0.120 4.120 4 C -0.068 4.068 5 C -0.135 4.135 6 C 0.512 3.488 7 O -0.558 6.558 8 N -0.705 5.705 9 C 0.154 3.846 10 H 0.087 0.913 11 C -0.132 4.132 12 C -0.107 4.107 13 C 0.079 3.921 14 H 0.038 0.962 15 C -0.150 4.150 16 N -0.509 5.509 17 C 0.038 3.962 18 C 0.448 3.552 19 O -0.570 6.570 20 N -0.578 5.578 21 C -0.380 4.380 22 H 0.099 0.901 23 C -0.010 4.010 24 N -0.903 5.903 25 Si 1.092 2.908 26 H -0.285 1.285 27 H -0.284 1.284 28 H -0.281 1.281 29 C 0.049 3.951 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.068 0.932 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.091 0.909 38 H 0.095 0.905 39 H 0.416 0.584 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.064 0.936 44 H 0.067 0.933 45 H 0.058 0.942 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.094 0.906 49 H 0.374 0.626 50 H 0.261 0.739 51 H 0.097 0.903 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.072 8.213 14.367 18.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.127 4.127 3 C -0.177 4.177 4 C -0.105 4.105 5 C -0.175 4.175 6 C 0.298 3.702 7 O -0.437 6.437 8 N -0.357 5.357 9 C 0.049 3.951 10 H 0.105 0.895 11 C -0.171 4.171 12 C -0.145 4.145 13 C -0.029 4.029 14 H 0.056 0.944 15 C -0.207 4.207 16 N -0.234 5.234 17 C -0.093 4.093 18 C 0.234 3.766 19 O -0.453 6.453 20 N -0.217 5.217 21 C -0.509 4.509 22 H 0.117 0.883 23 C -0.212 4.212 24 N -0.542 5.542 25 Si 0.918 3.082 26 H -0.212 1.212 27 H -0.209 1.209 28 H -0.207 1.207 29 C -0.079 4.079 30 H 0.116 0.884 31 H 0.114 0.886 32 H 0.086 0.914 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.114 0.886 39 H 0.253 0.747 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.090 0.910 43 H 0.082 0.918 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.112 0.888 49 H 0.207 0.793 50 H 0.072 0.928 51 H 0.115 0.885 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 7.331 8.388 14.461 18.255 hybrid contribution 1.885 -0.705 0.189 2.021 sum 9.216 7.683 14.650 18.937 Atomic orbital electron populations 1.23723 0.95271 1.01903 1.02350 1.21791 0.95466 0.95733 0.99707 1.20876 1.00110 0.94524 1.02173 1.20408 1.00585 0.94113 0.95427 1.21618 1.01578 0.95253 0.99063 1.20678 0.78879 0.86903 0.83703 1.90653 1.58213 1.63144 1.31659 1.45996 1.56145 1.23855 1.09698 1.20878 0.91276 0.85914 0.97047 0.89539 1.21982 0.95734 1.00418 0.98935 1.21571 1.00246 0.99593 0.93041 1.21671 0.87975 0.97598 0.95671 0.94431 1.21946 1.00560 1.00692 0.97497 1.61430 1.12919 1.47927 1.01137 1.21984 0.97423 0.98122 0.91742 1.19681 0.88642 0.84858 0.83465 1.90490 1.59093 1.45579 1.50173 1.41956 1.11148 1.52263 1.16325 1.20536 0.85986 1.39031 1.05362 0.88325 1.26471 1.07748 0.95077 0.91931 1.70875 1.06526 1.39776 1.37068 0.83110 0.72143 0.76585 0.76322 1.21170 1.20935 1.20675 1.22421 1.02388 0.93134 0.89956 0.88382 0.88574 0.91368 0.91999 0.91878 0.90663 0.90725 0.89027 0.88627 0.74653 0.91335 0.91542 0.91016 0.91758 0.91373 0.92285 0.92435 0.93449 0.88773 0.79311 0.92770 0.88512 0.94221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 13.89 29.01 0.40 -1.45 16 2 C -0.13 -1.23 5.31 -101.07 -0.54 -1.77 16 3 C -0.12 -0.96 10.03 36.01 0.36 -0.60 16 4 C -0.07 -0.74 4.67 -27.88 -0.13 -0.87 16 5 C -0.14 -1.53 5.68 -27.88 -0.16 -1.68 16 6 C 0.51 7.18 7.80 -10.98 -0.09 7.10 16 7 O -0.56 -9.37 15.64 5.56 0.09 -9.28 16 8 N -0.70 -9.77 4.41 -53.73 -0.24 -10.01 16 9 C 0.15 2.08 2.81 -67.85 -0.19 1.89 16 10 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 11 C -0.13 -1.52 5.67 -26.61 -0.15 -1.67 16 12 C -0.11 -1.15 5.20 -26.65 -0.14 -1.29 16 13 C 0.08 0.93 2.44 -67.72 -0.17 0.76 16 14 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 15 C -0.15 -1.61 8.59 37.16 0.32 -1.29 16 16 N -0.51 -7.42 3.53 -228.13 -0.81 -8.22 16 17 C 0.04 0.63 5.31 -4.98 -0.03 0.60 16 18 C 0.45 9.90 7.49 -10.99 -0.08 9.82 16 19 O -0.57 -14.26 14.74 5.55 0.08 -14.18 16 20 N -0.58 -13.99 5.28 -10.96 -0.06 -14.05 16 21 C -0.38 -10.38 9.68 -14.93 -0.14 -10.53 16 22 H 0.10 2.86 7.16 -52.49 -0.38 2.49 16 23 C -0.01 -0.27 5.50 -17.47 -0.10 -0.36 16 24 N -0.90 -24.97 13.68 55.50 0.76 -24.21 16 25 Si 1.09 24.03 29.92 -169.99 -5.09 18.95 16 26 H -0.29 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 28 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 29 C 0.05 0.72 4.70 -3.84 -0.02 0.70 16 30 H 0.10 0.94 7.99 -52.48 -0.42 0.52 16 31 H 0.10 0.80 8.04 -52.49 -0.42 0.37 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.44 8.06 -51.93 -0.42 0.02 16 34 H 0.06 0.47 8.08 -51.93 -0.42 0.05 16 35 H 0.07 0.90 7.95 -51.92 -0.41 0.49 16 36 H 0.07 0.83 8.05 -51.93 -0.42 0.42 16 37 H 0.09 0.89 8.14 -51.92 -0.42 0.47 16 38 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.42 6.10 8.17 -40.82 -0.33 5.76 16 40 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.07 0.83 7.73 -51.93 -0.40 0.43 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 46 H 0.06 0.62 6.38 -51.93 -0.33 0.29 16 47 H 0.05 0.72 8.00 -51.93 -0.42 0.31 16 48 H 0.09 1.40 5.42 -51.93 -0.28 1.11 16 49 H 0.37 8.43 6.73 -40.82 -0.27 8.16 16 50 H 0.26 6.92 6.78 -40.82 -0.28 6.64 16 51 H 0.10 1.74 6.69 -51.93 -0.35 1.39 16 52 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 413.51 15.07 6.23 6.23 Total: -1.00 -31.60 413.51 -8.83 -40.43 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: -8.96 Total: 14.99 kcal Atomic # 6 Polarization: 0.19 SS G_CDS: -0.84 Total: -0.65 kcal Atomic # 7 Polarization: -56.15 SS G_CDS: -0.34 Total: -56.49 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: 0.17 Total: -23.46 kcal Atomic # 14 Polarization: 24.03 SS G_CDS: -5.09 Total: 18.95 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -31.60 -8.83 -40.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132065824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.971 kcal (2) G-P(sol) polarization free energy of solvation -31.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds