Wall clock time and date at job start Tue Mar 31 2020 21:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50699 * 120.00268 * 2 1 4 4 C 1.50703 * 119.99974 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47206 * 94.99920 * 4 2 1 6 6 C 1.50703 * 109.47206 * 179.97438 * 5 4 2 7 7 O 1.21275 * 120.00045 * 0.02562 * 6 5 4 8 8 N 1.34777 * 119.99949 * 180.02562 * 6 5 4 9 9 C 1.46497 * 120.00250 * 179.97438 * 8 6 5 10 10 H 1.09004 * 109.52771 * 34.89986 * 9 8 6 11 11 C 1.53119 * 109.50396 * 274.80881 * 9 8 6 12 12 C 1.53117 * 109.15841 * 297.70782 * 11 9 8 13 13 C 1.53043 * 109.27824 * 302.34955 * 12 11 9 14 14 H 1.08998 * 109.46099 * 299.15877 * 13 12 11 15 15 C 1.53002 * 109.45999 * 179.19442 * 13 12 11 16 16 N 1.46844 * 109.52589 * 59.17914 * 13 12 11 17 17 C 1.46891 * 111.00149 * 174.15999 * 16 13 12 18 18 C 1.50700 * 109.47215 * 199.78291 * 17 16 13 19 19 O 1.21289 * 120.00020 * 359.97438 * 18 17 16 20 20 N 1.34773 * 120.00163 * 180.02562 * 18 17 16 21 21 C 1.37102 * 120.00249 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99583 * 359.97438 * 21 20 18 23 23 C 1.38949 * 119.99845 * 179.97438 * 21 20 18 24 24 N 1.31410 * 120.00566 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99756 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.47249 * 270.00823 * 25 23 21 27 27 H 1.48501 * 109.46938 * 30.00716 * 25 23 21 28 28 H 1.48500 * 109.46872 * 150.00089 * 25 23 21 29 29 C 1.46844 * 111.19561 * 298.25926 * 16 13 12 30 30 H 1.08003 * 120.00152 * 180.02562 * 1 2 3 31 31 H 1.07997 * 119.99840 * 0.02562 * 1 2 3 32 32 H 1.08995 * 109.46746 * 270.00052 * 3 2 1 33 33 H 1.09002 * 109.46877 * 29.99648 * 3 2 1 34 34 H 1.08995 * 109.47521 * 149.99936 * 3 2 1 35 35 H 1.09008 * 109.47042 * 334.99803 * 4 2 1 36 36 H 1.09006 * 109.47212 * 215.00290 * 4 2 1 37 37 H 1.09012 * 109.46828 * 60.00285 * 5 4 2 38 38 H 1.08997 * 109.47197 * 300.00454 * 5 4 2 39 39 H 0.97006 * 119.99975 * 0.02562 * 8 6 5 40 40 H 1.08992 * 109.52656 * 57.61643 * 11 9 8 41 41 H 1.08998 * 109.52049 * 177.74191 * 11 9 8 42 42 H 1.09001 * 109.50251 * 62.28967 * 12 11 9 43 43 H 1.09000 * 109.50536 * 182.36988 * 12 11 9 44 44 H 1.08994 * 109.47468 * 292.19039 * 15 13 12 45 45 H 1.08998 * 109.47055 * 52.19128 * 15 13 12 46 46 H 1.09003 * 109.47133 * 172.18744 * 15 13 12 47 47 H 1.08998 * 109.47191 * 79.78128 * 17 16 13 48 48 H 1.09001 * 109.47084 * 319.78320 * 17 16 13 49 49 H 0.97007 * 120.00383 * 359.97438 * 20 18 17 50 50 H 0.97003 * 119.99985 * 359.97438 * 24 23 21 51 51 H 1.09000 * 109.46283 * 181.75505 * 29 16 13 52 52 H 1.09003 * 109.46496 * 301.72244 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.0635 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 6 3.1815 -2.9894 -1.4356 7 8 3.4053 -3.5599 -0.3891 8 7 3.6070 -3.5224 -2.5981 9 6 4.3405 -4.7905 -2.5975 10 1 3.9525 -5.4355 -1.8091 11 6 5.8276 -4.5208 -2.3516 12 6 6.3786 -3.6641 -3.4948 13 6 6.1484 -4.3867 -4.8241 14 1 6.6737 -5.3416 -4.8140 15 6 6.6795 -3.5250 -5.9714 16 7 4.7111 -4.6208 -5.0129 17 6 4.4400 -5.1880 -6.3405 18 6 2.9916 -4.9687 -6.6943 19 8 2.2573 -4.3966 -5.9168 20 7 2.5120 -5.4092 -7.8743 21 6 1.1945 -5.2092 -8.1964 22 1 0.5409 -4.6990 -7.5044 23 6 0.7002 -5.6629 -9.4132 24 7 1.4954 -6.2841 -10.2550 25 14 -1.0951 -5.3910 -9.8518 26 1 -1.9009 -6.5444 -9.3768 27 1 -1.5805 -4.1471 -9.2020 28 1 -1.2311 -5.2652 -11.3252 29 6 4.1694 -5.4804 -3.9527 30 1 -0.5400 -0.9353 0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2452 1.6196 -1.0276 33 1 1.4745 2.0647 0.5138 34 1 3.0160 1.1748 0.5138 35 1 1.4386 -2.0853 0.4353 36 1 2.9743 -1.1986 0.5900 37 1 3.0524 -0.9044 -1.8709 38 1 1.5167 -1.7910 -2.0256 39 1 3.4283 -3.0659 -3.4351 40 1 5.9504 -3.9907 -1.4072 41 1 6.3675 -5.4668 -2.3112 42 1 5.8650 -2.7028 -3.5094 43 1 7.4467 -3.5038 -3.3473 44 1 6.0643 -2.6306 -6.0691 45 1 7.7096 -3.2363 -5.7622 46 1 6.6433 -4.0942 -6.9003 47 1 4.6535 -6.2568 -6.3294 48 1 5.0730 -4.6987 -7.0808 49 1 3.0992 -5.8671 -8.4960 50 1 2.4276 -6.4256 -10.0271 51 1 3.1104 -5.6609 -4.1371 52 1 4.7039 -6.4303 -3.9467 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001132065824.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:57 Heat of formation + Delta-G solvation = -87.692791 kcal Electronic energy + Delta-G solvation = -30251.560237 eV Core-core repulsion = 26249.825474 eV Total energy + Delta-G solvation = -4001.734763 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44019 -40.40849 -39.34783 -37.34559 -36.33374 -35.80077 -33.78978 -33.04228 -32.83794 -31.55679 -29.07725 -28.12909 -27.71943 -26.24053 -25.47302 -24.25524 -22.45118 -21.56067 -21.25551 -20.21856 -19.87758 -19.32822 -18.13339 -18.05511 -17.20521 -17.05429 -16.70301 -16.24043 -16.13922 -15.65345 -15.55093 -15.46114 -15.32225 -15.19120 -14.81376 -14.57837 -14.16686 -14.10970 -13.96605 -13.79184 -13.46709 -13.28823 -13.08590 -13.00261 -12.86746 -12.82178 -12.65018 -12.53932 -12.40255 -11.98187 -11.93887 -11.85675 -11.84562 -11.77861 -11.70229 -11.43101 -11.17200 -10.87604 -10.33666 -10.04557 -9.96002 -9.92744 -9.23407 -8.87969 -6.01241 1.29136 1.53626 1.55736 1.67254 1.81591 2.08277 2.29704 2.41144 2.67760 3.20389 3.29214 3.63627 3.75037 3.81802 3.94222 3.95955 4.01750 4.07615 4.21224 4.26015 4.31209 4.33694 4.37346 4.41610 4.42441 4.51746 4.60665 4.65146 4.69835 4.79254 4.85167 4.87588 4.94867 4.96502 4.99180 5.03755 5.06876 5.13076 5.17020 5.19787 5.27068 5.40269 5.59440 5.64617 5.73758 5.94469 5.97687 6.01790 6.20238 6.63736 6.64869 6.82030 7.29254 7.51444 8.01264 8.60083 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.008713 B = 0.003152 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3212.687344 B = 8881.902217 C =11223.561443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.133 4.133 3 C -0.119 4.119 4 C -0.063 4.063 5 C -0.129 4.129 6 C 0.509 3.491 7 O -0.588 6.588 8 N -0.704 5.704 9 C 0.154 3.846 10 H 0.072 0.928 11 C -0.123 4.123 12 C -0.100 4.100 13 C 0.080 3.920 14 H 0.052 0.948 15 C -0.147 4.147 16 N -0.520 5.520 17 C 0.051 3.949 18 C 0.449 3.551 19 O -0.601 6.601 20 N -0.593 5.593 21 C -0.402 4.402 22 H 0.073 0.927 23 C -0.044 4.044 24 N -0.922 5.922 25 Si 1.132 2.868 26 H -0.274 1.274 27 H -0.277 1.277 28 H -0.274 1.274 29 C 0.056 3.944 30 H 0.091 0.909 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.413 0.587 40 H 0.061 0.939 41 H 0.082 0.918 42 H 0.061 0.939 43 H 0.090 0.910 44 H 0.053 0.947 45 H 0.083 0.917 46 H 0.057 0.943 47 H 0.065 0.935 48 H 0.116 0.884 49 H 0.382 0.618 50 H 0.259 0.741 51 H 0.056 0.944 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.712 9.017 14.370 20.064 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.133 4.133 3 C -0.175 4.175 4 C -0.101 4.101 5 C -0.168 4.168 6 C 0.297 3.703 7 O -0.469 6.469 8 N -0.354 5.354 9 C 0.048 3.952 10 H 0.090 0.910 11 C -0.162 4.162 12 C -0.138 4.138 13 C -0.028 4.028 14 H 0.070 0.930 15 C -0.204 4.204 16 N -0.245 5.245 17 C -0.080 4.080 18 C 0.237 3.763 19 O -0.485 6.485 20 N -0.233 5.233 21 C -0.531 4.531 22 H 0.091 0.909 23 C -0.242 4.242 24 N -0.562 5.562 25 Si 0.953 3.047 26 H -0.199 1.199 27 H -0.202 1.202 28 H -0.199 1.199 29 C -0.072 4.072 30 H 0.110 0.890 31 H 0.129 0.871 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.112 0.888 39 H 0.250 0.750 40 H 0.079 0.921 41 H 0.101 0.899 42 H 0.080 0.920 43 H 0.108 0.892 44 H 0.072 0.928 45 H 0.102 0.898 46 H 0.076 0.924 47 H 0.083 0.917 48 H 0.134 0.866 49 H 0.216 0.784 50 H 0.070 0.930 51 H 0.075 0.925 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 9.009 9.188 14.469 19.363 hybrid contribution 1.417 -0.957 0.281 1.733 sum 10.426 8.231 14.750 19.850 Atomic orbital electron populations 1.23857 0.95387 1.02357 1.02066 1.21866 0.95609 0.95844 0.99986 1.20897 1.00235 0.93639 1.02775 1.20332 1.00301 0.94499 0.94930 1.21616 1.01382 0.94309 0.99514 1.21126 0.78515 0.87501 0.83152 1.90634 1.59513 1.64185 1.32596 1.46046 1.56042 1.23869 1.09476 1.20891 0.92868 0.85513 0.95885 0.90974 1.21907 0.93963 1.01358 0.98945 1.21552 1.01624 0.98649 0.91968 1.21794 0.85794 0.98586 0.96603 0.93005 1.21936 1.01679 0.99794 0.97031 1.61366 1.15337 1.47769 1.00064 1.21840 0.93147 0.99615 0.93361 1.20785 0.90882 0.82616 0.82048 1.90472 1.60811 1.46388 1.50875 1.42015 1.10448 1.53382 1.17447 1.20485 0.87411 1.39792 1.05450 0.90906 1.27690 1.10741 0.94223 0.91571 1.70941 1.06811 1.40900 1.37559 0.82622 0.68458 0.77141 0.76469 1.19939 1.20214 1.19942 1.22262 1.00211 0.94187 0.90538 0.89046 0.87109 0.90775 0.90945 0.91447 0.92347 0.91006 0.87001 0.88798 0.75044 0.92065 0.89913 0.91982 0.89177 0.92813 0.89818 0.92390 0.91698 0.86584 0.78447 0.92996 0.92514 0.92580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.67 13.89 67.78 0.94 -2.73 16 2 C -0.13 -2.48 5.31 -16.49 -0.09 -2.57 16 3 C -0.12 -1.70 10.03 71.24 0.71 -0.99 16 4 C -0.06 -1.38 4.67 29.85 0.14 -1.24 16 5 C -0.13 -2.89 5.68 29.85 0.17 -2.72 16 6 C 0.51 14.48 7.80 87.66 0.68 15.17 16 7 O -0.59 -20.17 15.64 -3.01 -0.05 -20.22 16 8 N -0.70 -19.66 4.41 -442.29 -1.95 -21.61 16 9 C 0.15 4.11 2.81 45.04 0.13 4.23 16 10 H 0.07 2.13 7.58 -2.39 -0.02 2.11 16 11 C -0.12 -2.60 5.67 30.67 0.17 -2.43 16 12 C -0.10 -1.87 5.20 30.65 0.16 -1.71 16 13 C 0.08 1.63 2.44 44.94 0.11 1.74 16 14 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 15 C -0.15 -2.71 8.59 71.98 0.62 -2.09 16 16 N -0.52 -14.42 3.53 -875.68 -3.09 -17.51 16 17 C 0.05 1.60 5.31 85.56 0.45 2.06 16 18 C 0.45 19.98 7.49 87.66 0.66 20.63 16 19 O -0.60 -30.78 14.74 -3.06 -0.05 -30.82 16 20 N -0.59 -29.04 5.28 -306.99 -1.62 -30.67 16 21 C -0.40 -22.43 9.68 84.04 0.81 -21.62 16 22 H 0.07 4.37 7.16 -2.91 -0.02 4.35 16 23 C -0.04 -2.39 5.50 84.93 0.47 -1.92 16 24 N -0.92 -51.02 13.68 21.66 0.30 -50.73 16 25 Si 1.13 48.36 29.92 68.60 2.05 50.41 16 26 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 27 H -0.28 -11.38 7.11 99.48 0.71 -10.67 16 28 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 29 C 0.06 1.62 4.70 86.33 0.41 2.03 16 30 H 0.09 1.76 7.99 -2.91 -0.02 1.74 16 31 H 0.11 1.69 8.04 -2.91 -0.02 1.66 16 32 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 34 H 0.07 0.90 8.08 -2.39 -0.02 0.88 16 35 H 0.06 1.46 7.95 -2.38 -0.02 1.44 16 36 H 0.07 1.60 8.05 -2.38 -0.02 1.58 16 37 H 0.11 2.05 8.14 -2.38 -0.02 2.03 16 38 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 39 H 0.41 12.21 8.17 -92.70 -0.76 11.45 16 40 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 41 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 42 H 0.06 1.30 7.73 -2.39 -0.02 1.29 16 43 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 44 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.08 1.15 8.13 -2.39 -0.02 1.13 16 46 H 0.06 1.06 6.38 -2.39 -0.02 1.05 16 47 H 0.07 1.84 8.00 -2.39 -0.02 1.82 16 48 H 0.12 3.17 5.42 -2.39 -0.01 3.16 16 49 H 0.38 17.31 6.73 -92.70 -0.62 16.69 16 50 H 0.26 13.82 6.78 -92.71 -0.63 13.19 16 51 H 0.06 2.10 6.69 -2.39 -0.02 2.08 16 52 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -69.56 413.51 1.81 -67.75 By element: Atomic # 1 Polarization: 47.86 SS G_CDS: -0.33 Total: 47.53 kcal Atomic # 6 Polarization: -0.69 SS G_CDS: 6.55 Total: 5.85 kcal Atomic # 7 Polarization: -114.14 SS G_CDS: -6.36 Total: -120.51 kcal Atomic # 8 Polarization: -50.95 SS G_CDS: -0.09 Total: -51.04 kcal Atomic # 14 Polarization: 48.36 SS G_CDS: 2.05 Total: 50.41 kcal Total: -69.56 1.81 -67.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132065824.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.945 kcal (2) G-P(sol) polarization free energy of solvation -69.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds