Wall clock time and date at job start Tue Mar 31 2020 21:27:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31004 * 1 3 3 C 1.50701 * 119.99855 * 2 1 4 4 C 1.50699 * 120.00216 * 179.97438 * 2 1 3 5 5 C 1.52995 * 109.47479 * 94.99602 * 4 2 1 6 6 C 1.50699 * 109.47479 * 179.97438 * 5 4 2 7 7 O 1.21276 * 119.99796 * 0.02562 * 6 5 4 8 8 N 1.34775 * 120.00098 * 180.02562 * 6 5 4 9 9 C 1.46495 * 120.00185 * 180.02562 * 8 6 5 10 10 H 1.08999 * 109.50520 * 35.07631 * 9 8 6 11 11 C 1.53124 * 109.50361 * 275.00500 * 9 8 6 12 12 C 1.53124 * 109.16086 * 182.36283 * 11 9 8 13 13 C 1.53036 * 109.27753 * 57.65319 * 12 11 9 14 14 H 1.09002 * 109.46647 * 60.83695 * 13 12 11 15 15 C 1.52995 * 109.45437 * 180.80797 * 13 12 11 16 16 N 1.46846 * 109.52511 * 300.82107 * 13 12 11 17 17 C 1.46901 * 111.00341 * 185.83844 * 16 13 12 18 18 C 1.50702 * 109.47227 * 163.93039 * 17 16 13 19 19 O 1.21296 * 119.99778 * 0.02562 * 18 17 16 20 20 N 1.34771 * 119.99921 * 180.02562 * 18 17 16 21 21 C 1.37097 * 120.00033 * 180.02562 * 20 18 17 22 22 H 1.08000 * 120.00244 * 359.97438 * 21 20 18 23 23 C 1.38955 * 120.00341 * 179.72191 * 21 20 18 24 24 N 1.31419 * 119.99814 * 0.27530 * 23 21 20 25 25 Si 1.86801 * 120.00316 * 180.27508 * 23 21 20 26 26 H 1.48494 * 109.46922 * 90.00020 * 25 23 21 27 27 H 1.48497 * 109.46909 * 210.00116 * 25 23 21 28 28 H 1.48495 * 109.46888 * 329.99843 * 25 23 21 29 29 C 1.46846 * 111.19773 * 61.74138 * 16 13 12 30 30 H 1.08005 * 119.99557 * 179.97438 * 1 2 3 31 31 H 1.08001 * 119.99893 * 0.02562 * 1 2 3 32 32 H 1.09001 * 109.46864 * 269.99511 * 3 2 1 33 33 H 1.08999 * 109.47065 * 30.00055 * 3 2 1 34 34 H 1.09005 * 109.46808 * 149.99981 * 3 2 1 35 35 H 1.09005 * 109.47000 * 334.99787 * 4 2 1 36 36 H 1.09000 * 109.47459 * 215.00181 * 4 2 1 37 37 H 1.09005 * 109.46854 * 60.00095 * 5 4 2 38 38 H 1.09000 * 109.47248 * 300.00709 * 5 4 2 39 39 H 0.97005 * 120.00244 * 0.02562 * 8 6 5 40 40 H 1.08994 * 109.52282 * 62.45724 * 11 9 8 41 41 H 1.09002 * 109.52010 * 302.26329 * 11 9 8 42 42 H 1.08997 * 109.50592 * 297.71273 * 12 11 9 43 43 H 1.09001 * 109.50496 * 177.58931 * 12 11 9 44 44 H 1.09007 * 109.47553 * 187.49537 * 15 13 12 45 45 H 1.08996 * 109.47254 * 307.49730 * 15 13 12 46 46 H 1.09001 * 109.46960 * 67.50157 * 15 13 12 47 47 H 1.09001 * 109.46971 * 43.93128 * 17 16 13 48 48 H 1.09000 * 109.47206 * 283.93401 * 17 16 13 49 49 H 0.97006 * 120.00460 * 359.97438 * 20 18 17 50 50 H 0.96997 * 119.99811 * 179.97438 * 24 23 21 51 51 H 1.09003 * 109.46379 * 58.27788 * 29 16 13 52 52 H 1.09005 * 109.46452 * 178.24403 * 29 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.0636 -1.3051 0.0006 5 6 2.4274 -1.6846 -1.4362 6 6 3.1815 -2.9894 -1.4355 7 8 3.4054 -3.5598 -0.3890 8 7 3.6071 -3.5223 -2.5980 9 6 4.3396 -4.7910 -2.5974 10 1 3.9485 -5.4367 -1.8113 11 6 5.8261 -4.5228 -2.3462 12 6 6.5928 -5.8470 -2.4058 13 6 6.3604 -6.5044 -3.7681 14 1 6.7290 -5.8475 -4.5561 15 6 7.1085 -7.8377 -3.8247 16 7 4.9239 -6.7408 -3.9604 17 6 4.6752 -7.4954 -5.1959 18 6 3.2769 -8.0569 -5.1688 19 8 2.5581 -7.8485 -4.2143 20 7 2.8252 -8.7906 -6.2051 21 6 1.5530 -9.3010 -6.1807 22 1 0.9129 -9.1154 -5.3309 23 6 1.0852 -10.0526 -7.2517 24 7 1.8642 -10.2788 -8.2857 25 14 -0.6509 -10.7415 -7.2218 26 1 -1.5844 -9.7573 -7.8259 27 1 -0.6948 -12.0066 -7.9982 28 1 -1.0533 -11.0084 -5.8176 29 6 4.1727 -5.4790 -3.9542 30 1 -0.5400 -0.9354 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 2.2452 1.6197 -1.0277 33 1 1.4744 2.0647 0.5138 34 1 3.0160 1.1748 0.5139 35 1 1.4387 -2.0852 0.4353 36 1 2.9743 -1.1986 0.5900 37 1 3.0524 -0.9044 -1.8709 38 1 1.5167 -1.7911 -2.0256 39 1 3.4283 -3.0659 -3.4351 40 1 5.9536 -4.0721 -1.3620 41 1 6.2083 -3.8459 -3.1102 42 1 6.2370 -6.5094 -1.6167 43 1 7.6576 -5.6575 -2.2702 44 1 7.0542 -8.2423 -4.8355 45 1 8.1520 -7.6808 -3.5518 46 1 6.6522 -8.5402 -3.1273 47 1 5.3931 -8.3119 -5.2737 48 1 4.7841 -6.8328 -6.0545 49 1 3.3999 -8.9570 -6.9687 50 1 1.5377 -10.8038 -9.0332 51 1 4.5514 -4.8269 -4.7412 52 1 3.1166 -5.6842 -4.1297 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132065825.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:27:06 Heat of formation + Delta-G solvation = -67.531773 kcal Electronic energy + Delta-G solvation = -29543.257527 eV Core-core repulsion = 25542.397011 eV Total energy + Delta-G solvation = -4000.860515 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.21072 -39.12129 -37.65778 -36.64531 -34.96811 -33.94147 -32.67084 -31.88589 -31.20124 -30.71731 -27.71611 -27.56421 -26.53890 -24.71000 -24.35839 -22.97403 -21.34347 -20.39964 -19.69070 -19.08706 -18.66668 -17.83681 -17.12645 -16.36870 -16.01178 -15.87555 -15.20687 -14.96819 -14.70314 -14.58021 -14.49942 -14.21349 -14.00899 -13.91685 -13.68546 -13.44864 -13.38383 -13.02025 -12.77246 -12.46325 -12.29846 -12.21754 -11.98504 -11.96430 -11.83190 -11.49784 -11.42909 -11.27787 -11.12257 -11.07540 -10.92134 -10.84962 -10.61929 -10.38506 -10.29983 -10.19380 -9.83242 -9.47131 -9.28105 -9.02084 -8.45060 -7.95530 -7.85513 -6.40427 -3.80930 1.93065 2.63908 3.09363 3.18280 3.26925 3.33245 3.92745 3.98896 4.24896 4.46676 4.62231 4.75879 4.80532 4.86908 4.93310 4.98117 5.00164 5.06653 5.21150 5.24407 5.26264 5.30346 5.37335 5.40502 5.48551 5.54648 5.60509 5.63278 5.63975 5.65915 5.73654 5.77582 5.87471 5.92900 5.94233 6.03415 6.07744 6.17529 6.26096 6.26570 6.31414 6.37040 6.45344 6.51393 6.60496 7.26110 7.39762 7.49597 7.56530 8.08190 8.23028 8.63864 9.20109 9.56586 10.08871 10.77399 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.002571 C = 0.002104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.493814 B =10889.055226 C =13305.410273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.128 4.128 3 C -0.120 4.120 4 C -0.070 4.070 5 C -0.134 4.134 6 C 0.513 3.487 7 O -0.539 6.539 8 N -0.725 5.725 9 C 0.150 3.850 10 H 0.099 0.901 11 C -0.128 4.128 12 C -0.107 4.107 13 C 0.079 3.921 14 H 0.037 0.963 15 C -0.150 4.150 16 N -0.505 5.505 17 C 0.041 3.959 18 C 0.444 3.556 19 O -0.575 6.575 20 N -0.567 5.567 21 C -0.296 4.296 22 H 0.102 0.898 23 C 0.021 3.979 24 N -0.903 5.903 25 Si 0.929 3.071 26 H -0.279 1.279 27 H -0.284 1.284 28 H -0.270 1.270 29 C 0.055 3.945 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.398 0.602 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.075 0.925 43 H 0.067 0.933 44 H 0.058 0.942 45 H 0.058 0.942 46 H 0.069 0.931 47 H 0.096 0.904 48 H 0.047 0.953 49 H 0.391 0.609 50 H 0.271 0.729 51 H 0.026 0.974 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.081 18.950 8.607 22.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.128 4.128 3 C -0.177 4.177 4 C -0.108 4.108 5 C -0.174 4.174 6 C 0.300 3.700 7 O -0.416 6.416 8 N -0.376 5.376 9 C 0.045 3.955 10 H 0.117 0.883 11 C -0.167 4.167 12 C -0.145 4.145 13 C -0.030 4.030 14 H 0.055 0.945 15 C -0.208 4.208 16 N -0.230 5.230 17 C -0.090 4.090 18 C 0.229 3.771 19 O -0.458 6.458 20 N -0.204 5.204 21 C -0.426 4.426 22 H 0.120 0.880 23 C -0.180 4.180 24 N -0.545 5.545 25 Si 0.756 3.244 26 H -0.205 1.205 27 H -0.209 1.209 28 H -0.194 1.194 29 C -0.074 4.074 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.082 0.918 35 H 0.096 0.904 36 H 0.095 0.905 37 H 0.110 0.890 38 H 0.113 0.887 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.094 0.906 43 H 0.086 0.914 44 H 0.077 0.923 45 H 0.077 0.923 46 H 0.088 0.912 47 H 0.114 0.886 48 H 0.065 0.935 49 H 0.224 0.776 50 H 0.081 0.919 51 H 0.044 0.956 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 7.551 18.268 10.236 22.260 hybrid contribution -0.340 0.203 -1.872 1.913 sum 7.212 18.470 8.364 21.520 Atomic orbital electron populations 1.23749 0.95274 1.01968 1.02195 1.21785 0.95452 0.95685 0.99837 1.20880 1.00218 0.94535 1.02062 1.20428 1.00844 0.94262 0.95270 1.21636 1.01294 0.95051 0.99454 1.20659 0.78879 0.86827 0.83651 1.90708 1.56920 1.62627 1.31347 1.46025 1.57944 1.24502 1.09097 1.20934 0.90959 0.84241 0.99330 0.88256 1.21965 0.95144 0.97693 1.01866 1.21564 0.99405 0.96141 0.97407 1.21680 0.88028 0.96520 0.96732 0.94528 1.21946 0.99319 0.97005 1.02494 1.61356 1.06381 1.18922 1.36378 1.21965 0.98174 0.98435 0.90383 1.19785 0.88414 0.84178 0.84723 1.90520 1.58221 1.62530 1.34575 1.41869 1.14625 1.46032 1.17840 1.19683 0.89875 1.28560 1.04492 0.87981 1.25249 0.99921 0.97618 0.95227 1.69613 1.36791 1.40374 1.07684 0.85874 0.81881 0.78154 0.78498 1.20488 1.20949 1.19417 1.22286 1.01381 0.89381 0.94317 0.88308 0.88548 0.91483 0.91943 0.91801 0.90417 0.90530 0.88989 0.88743 0.76856 0.91486 0.92415 0.90603 0.91405 0.92321 0.92288 0.91244 0.88573 0.93502 0.77574 0.91943 0.95588 0.88220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.55 13.89 29.01 0.40 -1.15 16 2 C -0.13 -1.03 5.31 -101.07 -0.54 -1.57 16 3 C -0.12 -0.77 10.03 36.01 0.36 -0.41 16 4 C -0.07 -0.67 4.67 -27.89 -0.13 -0.80 16 5 C -0.13 -1.18 5.68 -27.89 -0.16 -1.34 16 6 C 0.51 6.44 7.79 -10.99 -0.09 6.35 16 7 O -0.54 -8.94 15.65 5.56 0.09 -8.85 16 8 N -0.72 -8.47 5.08 -53.73 -0.27 -8.74 16 9 C 0.15 2.11 2.61 -67.85 -0.18 1.93 16 10 H 0.10 1.76 7.58 -51.93 -0.39 1.37 16 11 C -0.13 -1.54 5.58 -26.60 -0.15 -1.69 16 12 C -0.11 -1.26 5.37 -26.65 -0.14 -1.40 16 13 C 0.08 1.01 2.44 -67.73 -0.17 0.84 16 14 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 15 C -0.15 -1.76 8.57 37.15 0.32 -1.44 16 16 N -0.51 -8.23 4.12 -228.12 -0.94 -9.17 16 17 C 0.04 0.73 5.26 -4.97 -0.03 0.70 16 18 C 0.44 10.35 7.47 -10.99 -0.08 10.27 16 19 O -0.57 -15.42 14.42 5.54 0.08 -15.34 16 20 N -0.57 -14.23 5.29 -10.96 -0.06 -14.29 16 21 C -0.30 -8.23 9.68 -14.93 -0.14 -8.38 16 22 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 23 C 0.02 0.57 5.50 -17.46 -0.10 0.47 16 24 N -0.90 -24.48 13.05 55.50 0.72 -23.76 16 25 Si 0.93 21.11 29.55 -169.99 -5.02 16.08 16 26 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 27 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 28 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 29 C 0.05 0.84 4.58 -3.83 -0.02 0.83 16 30 H 0.10 0.80 7.99 -52.48 -0.42 0.38 16 31 H 0.10 0.65 8.04 -52.49 -0.42 0.23 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.06 0.36 8.06 -51.93 -0.42 -0.06 16 34 H 0.06 0.39 8.08 -51.93 -0.42 -0.03 16 35 H 0.08 0.85 7.94 -51.93 -0.41 0.44 16 36 H 0.08 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.40 3.56 8.60 -40.82 -0.35 3.21 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.06 0.68 6.44 -51.92 -0.33 0.34 16 45 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 46 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 47 H 0.10 1.54 5.55 -51.93 -0.29 1.25 16 48 H 0.05 0.75 8.05 -51.93 -0.42 0.33 16 49 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 50 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 51 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 52 H 0.10 1.88 6.35 -51.93 -0.33 1.55 16 LS Contribution 416.58 15.07 6.28 6.28 Total: -1.00 -32.85 416.58 -9.06 -41.91 By element: Atomic # 1 Polarization: 21.76 SS G_CDS: -9.11 Total: 12.65 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: -0.83 Total: 3.21 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.55 Total: -55.95 kcal Atomic # 8 Polarization: -24.35 SS G_CDS: 0.17 Total: -24.19 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -32.85 -9.06 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132065825.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.620 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds