Wall clock time and date at job start Tue Mar 31 2020 21:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.59044 * 2 1 4 4 C 1.53191 * 109.58497 * 120.42834 * 2 1 3 5 5 C 1.53039 * 109.31235 * 174.41766 * 4 2 1 6 6 C 1.53043 * 109.54084 * 298.63544 * 5 4 2 7 7 H 1.09003 * 109.49635 * 181.34485 * 6 5 4 8 8 N 1.46490 * 109.49673 * 301.41454 * 6 5 4 9 9 C 1.34785 * 119.99896 * 204.99846 * 8 6 5 10 10 O 1.21276 * 119.99794 * 0.02562 * 9 8 6 11 11 C 1.50695 * 119.99809 * 179.97438 * 9 8 6 12 12 C 1.53001 * 109.46964 * 179.97438 * 11 9 8 13 13 C 1.53001 * 109.47178 * 179.97438 * 12 11 9 14 14 N 1.46499 * 109.47021 * 179.97438 * 13 12 11 15 15 C 1.34776 * 120.00162 * 180.02562 * 14 13 12 16 16 O 1.21289 * 119.99983 * 0.02562 * 15 14 13 17 17 C 1.50697 * 120.00288 * 180.02562 * 15 14 13 18 18 C 1.53002 * 117.49588 * 248.74399 * 17 15 14 19 19 C 1.53007 * 117.49764 * 180.08947 * 17 15 14 20 20 C 1.52761 * 109.38087 * 61.23985 * 6 5 4 21 21 N 1.46925 * 109.00624 * 305.58796 * 20 6 5 22 22 C 1.36938 * 120.63270 * 233.58143 * 21 20 6 23 23 H 1.07999 * 120.00507 * 150.34149 * 22 21 20 24 24 C 1.38811 * 119.99872 * 330.35814 * 22 21 20 25 25 N 1.31623 * 120.00118 * 336.37493 * 24 22 21 26 26 Si 1.86808 * 120.00116 * 156.10806 * 24 22 21 27 27 H 1.48497 * 109.47033 * 59.99395 * 26 24 22 28 28 H 1.48504 * 109.46904 * 179.97438 * 26 24 22 29 29 H 1.48494 * 109.47002 * 299.99415 * 26 24 22 30 30 H 1.08997 * 109.47558 * 180.28552 * 1 2 3 31 31 H 1.09003 * 109.46889 * 300.28187 * 1 2 3 32 32 H 1.09004 * 109.47443 * 60.27968 * 1 2 3 33 33 H 1.09000 * 109.50000 * 294.37128 * 4 2 1 34 34 H 1.09004 * 109.49794 * 54.46916 * 4 2 1 35 35 H 1.09003 * 109.46006 * 58.65917 * 5 4 2 36 36 H 1.09003 * 109.46444 * 178.62451 * 5 4 2 37 37 H 0.97004 * 120.00127 * 24.99449 * 8 6 5 38 38 H 1.08999 * 109.47526 * 300.00037 * 11 9 8 39 39 H 1.08997 * 109.47184 * 60.00282 * 11 9 8 40 40 H 1.08999 * 109.47147 * 300.00413 * 12 11 9 41 41 H 1.08997 * 109.46822 * 60.00204 * 12 11 9 42 42 H 1.08999 * 109.47474 * 300.00280 * 13 12 11 43 43 H 1.08997 * 109.47021 * 60.00395 * 13 12 11 44 44 H 0.97003 * 120.00113 * 0.02562 * 14 13 12 45 45 H 1.08994 * 115.54892 * 34.41424 * 17 15 14 46 46 H 1.08996 * 117.50287 * 0.02562 * 18 17 15 47 47 H 1.09007 * 117.49463 * 145.01792 * 18 17 15 48 48 H 1.08999 * 117.49396 * 214.97781 * 19 17 15 49 49 H 1.08997 * 117.50141 * 359.97384 * 19 17 15 50 50 H 1.08998 * 109.50904 * 185.70904 * 20 6 5 51 51 H 1.08999 * 109.43256 * 65.41941 * 20 6 5 52 52 H 0.97004 * 119.99620 * 353.98949 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0435 -0.7310 1.2445 5 6 3.5674 -0.8496 1.1690 6 6 3.9568 -1.6658 -0.0656 7 1 5.0411 -1.7701 -0.1056 8 7 3.3404 -2.9925 0.0110 9 6 3.8969 -4.0328 -0.6407 10 8 4.9082 -3.8706 -1.2901 11 6 3.2631 -5.3977 -0.5615 12 6 4.0862 -6.3908 -1.3843 13 6 3.4431 -7.7767 -1.3033 14 7 4.2309 -8.7274 -2.0918 15 6 3.8508 -10.0183 -2.1673 16 8 2.8561 -10.3927 -1.5829 17 6 4.6615 -10.9964 -2.9778 18 6 4.0292 -11.5490 -4.2567 19 6 4.1768 -12.4468 -3.0258 20 6 3.4644 -0.9504 -1.3223 21 7 2.0225 -0.6981 -1.1953 22 6 1.1535 -1.1107 -2.1699 23 1 0.1376 -1.3714 -1.9125 24 6 1.5785 -1.1942 -3.4887 25 7 2.6015 -0.4738 -3.8974 26 14 0.7034 -2.3347 -4.6817 27 1 -0.7236 -1.9381 -4.7890 28 1 1.3449 -2.2401 -6.0177 29 1 0.7930 -3.7318 -4.1868 30 1 -0.3634 -1.0276 0.0051 31 1 -0.3633 0.5182 0.8875 32 1 -0.3634 0.5095 -0.8925 33 1 1.7660 -0.1696 2.1366 34 1 1.6028 -1.7270 1.2891 35 1 4.0061 0.1458 1.0995 36 1 3.9378 -1.3477 2.0651 37 1 2.5317 -3.1223 0.5308 38 1 3.2322 -5.7242 0.4780 39 1 2.2488 -5.3508 -0.9578 40 1 4.1167 -6.0641 -2.4237 41 1 5.1006 -6.4377 -0.9884 42 1 3.4130 -8.1032 -0.2638 43 1 2.4285 -7.7301 -1.6990 44 1 5.0262 -8.4279 -2.5595 45 1 5.7379 -10.8250 -2.9819 46 1 3.0270 -11.2049 -4.5121 47 1 4.6898 -11.7416 -5.1022 48 1 4.9344 -13.2297 -3.0618 49 1 3.2717 -12.6937 -2.4708 50 1 3.6502 -1.5771 -2.1944 51 1 3.9928 -0.0032 -1.4310 52 1 3.0032 0.1791 -3.3029 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001132079253.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:17 Heat of formation + Delta-G solvation = -45.830780 kcal Electronic energy + Delta-G solvation = -29954.059309 eV Core-core repulsion = 25954.139819 eV Total energy + Delta-G solvation = -3999.919490 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 337.215 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.12065 -39.61690 -37.84908 -36.67366 -35.48163 -34.23818 -32.95864 -32.70762 -30.76642 -29.72812 -27.56877 -26.15586 -24.91489 -24.15881 -22.74502 -22.11913 -21.99439 -20.85346 -20.42762 -19.87046 -18.77841 -17.65222 -17.16617 -16.76553 -16.07513 -15.91647 -15.51455 -15.35748 -14.86412 -14.67577 -14.23906 -14.15381 -13.89942 -13.55657 -13.45278 -13.30862 -13.14685 -12.79417 -12.68601 -12.20723 -12.13161 -11.86883 -11.74434 -11.49961 -11.39231 -11.27643 -11.21821 -10.95232 -10.90401 -10.83211 -10.80176 -10.67347 -10.37836 -10.06409 -10.04951 -9.97773 -9.75919 -9.35996 -9.23391 -9.19538 -8.48041 -8.31663 -6.81651 -5.99982 -3.20686 2.30259 2.90743 3.14815 3.48270 3.51639 3.56133 3.69599 3.72716 4.40082 4.49536 4.56613 4.59249 4.77161 4.86696 4.96461 5.02183 5.14986 5.25940 5.27969 5.31827 5.38383 5.41118 5.45402 5.46951 5.56963 5.61433 5.63798 5.70512 5.80539 5.88667 6.00402 6.05410 6.09299 6.16738 6.21345 6.26353 6.30083 6.34859 6.39342 6.50913 6.53850 6.67400 6.97749 7.03192 7.17198 7.24400 7.32004 8.04285 8.05029 8.05967 8.61357 8.75822 9.14957 9.88628 10.33426 11.26321 Molecular weight = 337.22amu Principal moments of inertia in cm(-1) A = 0.012749 B = 0.002645 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.664553 B =10584.291923 C =11746.417484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.167 3.833 3 H 0.022 0.978 4 C -0.130 4.130 5 C -0.119 4.119 6 C 0.125 3.875 7 H 0.076 0.924 8 N -0.702 5.702 9 C 0.514 3.486 10 O -0.550 6.550 11 C -0.137 4.137 12 C -0.114 4.114 13 C 0.118 3.882 14 N -0.724 5.724 15 C 0.541 3.459 16 O -0.544 6.544 17 C -0.196 4.196 18 C -0.153 4.153 19 C -0.149 4.149 20 C 0.141 3.859 21 N -0.589 5.589 22 C -0.345 4.345 23 H 0.058 0.942 24 C -0.021 4.021 25 N -0.914 5.914 26 Si 1.058 2.942 27 H -0.294 1.294 28 H -0.286 1.286 29 H -0.295 1.295 30 H 0.052 0.948 31 H 0.036 0.964 32 H 0.060 0.940 33 H 0.053 0.947 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.396 0.604 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.070 0.930 44 H 0.404 0.596 45 H 0.124 0.876 46 H 0.100 0.900 47 H 0.105 0.895 48 H 0.102 0.898 49 H 0.107 0.893 50 H 0.087 0.913 51 H 0.021 0.979 52 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.970 -14.701 7.474 16.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.060 3.940 3 H 0.040 0.960 4 C -0.169 4.169 5 C -0.157 4.157 6 C 0.019 3.981 7 H 0.094 0.906 8 N -0.353 5.353 9 C 0.300 3.700 10 O -0.428 6.428 11 C -0.178 4.178 12 C -0.153 4.153 13 C -0.005 4.005 14 N -0.375 5.375 15 C 0.327 3.673 16 O -0.421 6.421 17 C -0.217 4.217 18 C -0.190 4.190 19 C -0.186 4.186 20 C 0.014 3.986 21 N -0.313 5.313 22 C -0.474 4.474 23 H 0.076 0.924 24 C -0.224 4.224 25 N -0.554 5.554 26 Si 0.889 3.111 27 H -0.221 1.221 28 H -0.212 1.212 29 H -0.222 1.222 30 H 0.071 0.929 31 H 0.055 0.945 32 H 0.079 0.921 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.230 0.770 38 H 0.108 0.892 39 H 0.115 0.885 40 H 0.099 0.901 41 H 0.094 0.906 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.238 0.762 45 H 0.142 0.858 46 H 0.118 0.882 47 H 0.123 0.877 48 H 0.121 0.879 49 H 0.126 0.874 50 H 0.105 0.895 51 H 0.039 0.961 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.967 -15.408 5.865 16.957 hybrid contribution -0.053 0.921 1.632 1.875 sum 3.915 -14.486 7.497 16.775 Atomic orbital electron populations 1.21764 0.95880 1.01273 1.00088 1.20450 0.93142 0.93331 0.87062 0.96041 1.22054 0.95058 1.00777 0.99037 1.21688 0.97075 1.00078 0.96835 1.21492 0.96933 0.82213 0.97477 0.90620 1.45843 1.29415 1.08520 1.51473 1.20370 0.84495 0.86169 0.78961 1.90671 1.25606 1.85382 1.41130 1.21510 1.01401 0.92792 1.02055 1.21491 0.99604 0.91905 1.02257 1.21426 0.95389 0.87916 0.95817 1.45936 1.30626 1.08671 1.52275 1.19672 0.84681 0.82343 0.80598 1.90699 1.26840 1.78393 1.46207 1.22208 1.00237 0.96515 1.02770 1.22964 1.02499 1.02523 0.91022 1.22960 1.03853 0.90961 1.00831 1.21252 0.84831 0.96647 0.95825 1.44102 1.02242 1.65211 1.19773 1.19846 0.95853 1.43654 0.88055 0.92397 1.25752 1.00039 1.00831 0.95773 1.70770 1.25523 1.21076 1.38013 0.83614 0.74979 0.75996 0.76527 1.22089 1.21159 1.22226 0.92905 0.94495 0.92084 0.92794 0.92529 0.91235 0.92810 0.76953 0.89222 0.88458 0.90128 0.90611 0.91408 0.91190 0.76190 0.85812 0.88153 0.87699 0.87942 0.87414 0.89477 0.96120 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.40 7.95 37.16 0.30 -2.11 16 2 C 0.17 3.22 3.50 -67.60 -0.24 2.99 16 3 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 4 C -0.13 -2.01 5.21 -26.61 -0.14 -2.15 16 5 C -0.12 -1.80 5.59 -26.69 -0.15 -1.95 16 6 C 0.12 2.29 2.81 -68.04 -0.19 2.10 16 7 H 0.08 1.43 7.58 -51.93 -0.39 1.04 16 8 N -0.70 -11.86 4.91 -53.91 -0.26 -12.12 16 9 C 0.51 8.94 7.79 -10.98 -0.09 8.85 16 10 O -0.55 -11.58 15.64 5.56 0.09 -11.49 16 11 C -0.14 -1.76 5.70 -27.88 -0.16 -1.92 16 12 C -0.11 -1.38 4.62 -26.73 -0.12 -1.50 16 13 C 0.12 1.32 5.67 -4.04 -0.02 1.30 16 14 N -0.72 -7.50 5.56 -60.30 -0.33 -7.84 16 15 C 0.54 6.36 7.61 -10.99 -0.08 6.28 16 16 O -0.54 -8.47 16.26 5.55 0.09 -8.38 16 17 C -0.20 -1.65 6.19 -91.77 -0.57 -2.22 16 18 C -0.15 -1.14 10.24 -26.69 -0.27 -1.41 16 19 C -0.15 -1.16 10.05 -26.69 -0.27 -1.43 16 20 C 0.14 3.24 4.25 -3.93 -0.02 3.23 16 21 N -0.59 -13.64 2.75 -165.04 -0.45 -14.10 16 22 C -0.34 -9.03 8.48 -15.06 -0.13 -9.16 16 23 H 0.06 1.51 6.28 -52.49 -0.33 1.18 16 24 C -0.02 -0.59 4.71 -17.43 -0.08 -0.68 16 25 N -0.91 -27.37 12.46 55.49 0.69 -26.68 16 26 Si 1.06 25.34 29.98 -169.99 -5.10 20.25 16 27 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 H -0.29 -6.82 7.11 56.52 0.40 -6.41 16 30 H 0.05 0.97 7.44 -51.93 -0.39 0.58 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 1.23 7.62 -51.93 -0.40 0.84 16 33 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.86 6.40 -51.93 -0.33 0.53 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.40 5.97 6.77 -40.82 -0.28 5.69 16 38 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.10 1.25 8.14 -51.93 -0.42 0.83 16 40 H 0.08 1.12 8.10 -51.93 -0.42 0.70 16 41 H 0.08 0.90 8.10 -51.93 -0.42 0.48 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.40 3.28 8.47 -40.82 -0.35 2.93 16 45 H 0.12 0.76 8.14 -51.93 -0.42 0.34 16 46 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 47 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 48 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 49 H 0.11 1.01 7.67 -51.93 -0.40 0.61 16 50 H 0.09 2.38 6.40 -51.93 -0.33 2.05 16 51 H 0.02 0.50 7.84 -51.93 -0.41 0.09 16 52 H 0.27 8.10 6.69 -40.82 -0.27 7.83 16 LS Contribution 410.45 15.07 6.19 6.19 Total: -1.00 -33.98 410.45 -10.33 -44.31 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -9.00 Total: 9.65 kcal Atomic # 6 Polarization: 2.45 SS G_CDS: -2.23 Total: 0.22 kcal Atomic # 7 Polarization: -60.37 SS G_CDS: -0.36 Total: -60.73 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: 0.18 Total: -19.87 kcal Atomic # 14 Polarization: 25.34 SS G_CDS: -5.10 Total: 20.25 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.98 -10.33 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001132079253.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.524 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds